RchiOBHm_Chr6g0278611

Zeaxanthin epoxidase, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000348
Physical Location & Seq
Reverse (-)
41719771 .. 41722734
2964 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24993

Sequence Viewer

Length: 1173 bp
ATGCAAGTAGTAGAGGACGTCGTGATTGTAGGAGCTGGAATTTCTGGCCTCACAACCGCCCTGGGACTTCACAGGCTGGGCATTAGGAGCTTAGTGCTGGAATCGTTTCATAGCTTGAGGATAACAGGGTTTGCACTCACAACATGGACTAATGCGTGGAAGGCTTTAGATGCCATTGGTGTTGGTGATTATTTACGGCAGCAACACCTGACTCTTCTTGGTGGAGACCATGAAAATCGTTGTGTGAAAAGGAAGTTGCTGTTGGAAGCCCTTGCAAGTGAACTTCCTAGTGGCACCATTAGGTTCTCTTCAAAGGTTGTTTCCATTGAGGAATCAGGCTACTTTAAGCTGGTGCATCTTGCTGACGGAACCATCCTCAAAGCCAAGATTTTGGTTGGATGTGATGGAGTAAACTCAGTGGTTGCAAAATGGCTGGGCTTCAAGCCGCCGGTCTTTACAGGAAGATCTGCCATTCGAGGTTGTGCTGAGTTCAAGAGCAGCCATGATTTTGATCCCATGTTCATGCAGTACTTTGGGAACGGTGTTAGATCTGGTGTAGTTCCTTGTGATGATAAAAATGTTTACTGGGCCATCACTTGGACTCCCTCGAGCCAAGAGAAAGAGCTAGAGGAAAACCCAGCTCAGTTGAAGCGATATATGTTAAGCAAGCTCGGAAAGGTATCAGATGAAGTCCGGGCCGTTGTGGAAAACACCGATTTGGATGCTTTTATATCCTCTCCATTGAGATGTAGGCATCCTTGGGAACTTATTTGGGGAAATATTAGTAAAGGTAATGTATGTGTGGCGGGAGACGCGCTCCACCCCATGACCCCAGATATTGGACAAGGTGGCTGTGCTGCATTAGAGGACGGTGTTGTATTAGCAAGGTGTCTTGGTGAGGCTTTGTTGAAGAATCGGAGCCAAGAAATTAGAGATGAAGGTGAACAAGGAAAAGTGGAATATAAAATGATTGAAAGAGGGTTGAATAAGTATGCCAGTGAGAGGAAATGGAGAAGTTTTGATCTTATTAGTACAGCTTATGTGGTTGGTTTTATACAGGAGGCTGATGGAAAAATAATGACTTTCTTGAGGGACAAGTTTTTCTCTCCAATCCTGGCCGGGTTGCTGTTGAAGAAGGCTGATTATGATTGTGGTAAGCTCAGAAGCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

390

Amino Acids

43.11

Weight (kDa)

8.0

Isoelectric Point (pI)

33.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 6 - 89 2.1e-07 FAD binding domain
Lycopene_cycl PF05834 6 - 149 2.9e-06 Lycopene cyclase protein
FAD_binding_3 PF01494 88 - 310 1e-15 FAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000348)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38540 AT5G05320
fragaria_vesca FvH4_1g12561 FvH4_1g12581 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_3g33121 FvH4_3g33122 FvH4_4g08974 FvH4_4g09610 FvH4_7g17841
malus_domestica MD05G1123600.v1.1 MD05G1123700.v1.1
prunus_persica Prupe.8G167400_v2.0.a1 Prupe.8G167500_v2.0.a1 Prupe.8G167700_v2.0.a1 Prupe.8G167700_v2.0.a1
pyrus_communis pycom05g11780 pycom05g11790
rosa_chinensis RchiOBHm_Chr6g0278521 RchiOBHm_Chr6g0278531 RchiOBHm_Chr6g0278551 RchiOBHm_Chr6g0278591 RchiOBHm_Chr6g0278611 RchiOBHm_Chr6g0278671 RchiOBHm_Chr6g0278691 RchiOBHm_Chr6g0278701
rosa_laevigata RLG00000013200 RLG00000013201 RLG00000013203 RLG00000013205 RLG00000013206 RLG00000013210 RLG00000013211 RLG00000013213 RLG00000013216 RLG00000013217
rosa_multiflora Rmu_sc0000258.1_g000072 Rmu_sc0000258.1_g000073 Rmu_sc0000258.1_g000082 Rmu_sc0000258.1_g000083 Rmu_sc0000258.1_g000090 Rmu_sc0000258.1_g000094 Rmu_sc0000258.1_g000096 Rmu_sc0002777.1_g000006 Rmu_sc0002777.1_g000011 Rmu_sc0002777.1_g000019 Rmu_sc0006193.1_g000001 Rmu_sc0034228.1_g000001 Rmu_ssc0000042.1_g000052 Rmu_ssc0000144.1_g000014
rosa_roxburghii Rroxscaffold_7G00189700 Rroxscaffold_7G00189710 Rroxscaffold_7G00189720 Rroxscaffold_7G00189730 Rroxscaffold_7G00189770 Rroxscaffold_7G00189800 Rroxscaffold_7G00189820 Rroxscaffold_7G00189960 Rroxscaffold_7G00190070 Rroxscaffold_7G00190090 Rroxscaffold_7G00190140 Rroxscaffold_7G00190160 Rroxscaffold_7G00190170 Rroxscaffold_7G00190270 Rroxscaffold_7G00190280 Rroxscaffold_7G00190300 Rroxscaffold_7G00190310
rosa_rugosa Rorug02G0222700 Rorug06G0117300 Rorug06G0117400 Rorug06G0117700 Rorug06G0117900 Rorug06G0118000 Rorug06G0118100 Rorug06G0118200
rosa_samantha Rh1BG066900 Rh2BG292300 Rh6BG231700 Rh6BG231800 Rh6BG232000 Rh6BG232300 Rh6BG232500 Rh6CG234100 Rh6CG234200 Rh6CG234300 Rh6CG234700 Rh6DG225400 Rh6DG225500 Rh6DG225800 Rh6DG226000 Rh6DG226300
rosa_wichuraiana Rw0G003090 Rw0G003690 Rw0G021770 Rw4G037090 Rw6G019870 Rw6G019890 Rw6G019900 Rw6G019910 Rw6G019920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 21
AccB1I GGYRCC 1 cut(s) 293
AccB7I CCANNNNNTGG 2 cut(s) 597, 839
AccII CGCG 1 cut(s) 815
AciI CCGC 3 cut(s) 57, 446, 806
AclWI GGATC 1 cut(s) 506
AcoI YGGCCR 1 cut(s) 1116
AcsI RAATTY 1 cut(s) 39
AcyI GRCGYC 1 cut(s) 18
AfaI GTAC 2 cut(s) 530, 1033
AfiI CCNNNNNNNGG 3 cut(s) 597, 839, 1002
AgsI TTSAA 8 cut(s) 312, 442, 493, 649, 910, 974, 985, 1132
AjnI CCWGG 2 cut(s) 60, 1113
AjuI GAANNNNNNNTTGG 2 cut(s) 245, 277
Alw26I GTCTC 2 cut(s) 219, 804
AlwI GGATC 1 cut(s) 506
Ama87I CYCGRG 1 cut(s) 607
AoxI GGCC 4 cut(s) 46, 588, 696, 1116
ApeKI GCWGC 3 cut(s) 199, 498, 857
ApoI RAATTY 1 cut(s) 39
Asp700I GAANNNNTTC 1 cut(s) 105
AspLEI GCGC 1 cut(s) 817
AspS9I GGNCC 2 cut(s) 588, 696
AsuC2I CCSGG 2 cut(s) 695, 1120
AsuHPI GGTGA 3 cut(s) 197, 908, 953
AvaI CYCGRG 1 cut(s) 607
BanI GGYRCC 1 cut(s) 293
BbvI GCAGC 3 cut(s) 211, 510, 844
BccI CCATC 4 cut(s) 380, 398, 599, 1061
BceAI ACGGC 2 cut(s) 212, 683
BcgI CGANNNNNNTGC 2 cut(s) 704, 738
BciT130I CCWGG 2 cut(s) 62, 1115
BcnI CCSGG 2 cut(s) 695, 1120
BcoDI GTCTC 2 cut(s) 219, 804
BfaI CTAG 2 cut(s) 288, 626
BglII AGATCT 2 cut(s) 464, 548
BisI GCNGC 4 cut(s) 200, 446, 499, 858
BlsI GCNGC 4 cut(s) 201, 447, 500, 859
BmcAI AGTACT 1 cut(s) 530
Bme1390I CCNGG 4 cut(s) 62, 695, 1115, 1120
BmeT110I CYCGRG 1 cut(s) 607
BmgT120I GGNCC 2 cut(s) 588, 696
BmiI GGNNCC 3 cut(s) 295, 370, 920
BmrFI CCNGG 4 cut(s) 62, 695, 1115, 1120
BmrI ACTGGG 1 cut(s) 595
BmsI GCATC 4 cut(s) 160, 364, 712, 763
BmuI ACTGGG 1 cut(s) 595
BplI GAGNNNNNCTC 2 cut(s) 801, 833
BpuEI CTTGAG 2 cut(s) 136, 1108
BpuMI CCSGG 2 cut(s) 695, 1120
BsaBI GATNNNNATC 1 cut(s) 510
BsaHI GRCGYC 1 cut(s) 18
BsaI GGTCTC 1 cut(s) 219
BsaJI CCNNGG 3 cut(s) 60, 61, 758
BsaXI ACNNNNNCTCC 2 cut(s) 586, 616
Bsc4I CCNNNNNNNGG 3 cut(s) 597, 839, 1002
Bse118I RCCGGY 1 cut(s) 448
Bse1I ACTGG 2 cut(s) 590, 996
Bse8I GATNNNNATC 1 cut(s) 510
BseBI CCWGG 2 cut(s) 62, 1115
BseDI CCNNGG 3 cut(s) 60, 61, 758
BseGI GGATG 4 cut(s) 372, 404, 727, 754
BseJI GATNNNNATC 1 cut(s) 510
BseLI CCNNNNNNNGG 3 cut(s) 597, 839, 1002
BseMII CTCAG 3 cut(s) 429, 477, 656
BseNI ACTGG 2 cut(s) 590, 996
BseXI GCAGC 3 cut(s) 211, 510, 844
BseYI CCCAGC 3 cut(s) 76, 433, 637
Bsh1236I CGCG 1 cut(s) 815
BshFI GGCC 4 cut(s) 48, 590, 698, 1118
BshNI GGYRCC 1 cut(s) 293
BsiHKCI CYCGRG 1 cut(s) 607
BsiSI CCGG 3 cut(s) 449, 694, 1119
BslFI GGGAC 2 cut(s) 78, 1106
BslI CCNNNNNNNGG 3 cut(s) 597, 839, 1002
BsmAI GTCTC 2 cut(s) 219, 804
BsmBI CGTCTC 1 cut(s) 804
BsmFI GGGAC 2 cut(s) 78, 1106
BsnI GGCC 4 cut(s) 48, 590, 698, 1118
Bso31I GGTCTC 1 cut(s) 219
BsoBI CYCGRG 1 cut(s) 607
Bsp143I GATC 4 cut(s) 464, 511, 548, 1021
BspACI CCGC 3 cut(s) 57, 446, 806
BspANI GGCC 4 cut(s) 48, 590, 698, 1118
BspCNI CTCAG 4 cut(s) 428, 478, 655, 1173
BspFNI CGCG 1 cut(s) 815
BspLI GGNNCC 3 cut(s) 295, 370, 920
BspPI GGATC 1 cut(s) 506
BspT107I GGYRCC 1 cut(s) 293
BspTNI GGTCTC 1 cut(s) 219
BsrFI RCCGGY 1 cut(s) 448
BsrI ACTGG 2 cut(s) 590, 996
BssAI RCCGGY 1 cut(s) 448
BssECI CCNNGG 3 cut(s) 60, 61, 758
BssMI GATC 4 cut(s) 464, 511, 548, 1021
BssNI GRCGYC 1 cut(s) 18
BssT1I CCWWGG 1 cut(s) 758
Bst2UI CCWGG 2 cut(s) 62, 1115
Bst4CI ACNGT 2 cut(s) 542, 872
Bst6I CTCTTC 2 cut(s) 219, 313
BstACI GRCGYC 1 cut(s) 18
BstC8I GCNNGC 1 cut(s) 668
BstDEI CTNAG 5 cut(s) 91, 415, 486, 642, 1160
BstF5I GGATG 4 cut(s) 372, 404, 727, 754
BstFNI CGCG 1 cut(s) 815
BstHHI GCGC 1 cut(s) 817
BstKTI GATC 4 cut(s) 467, 514, 551, 1024
BstMAI GTCTC 2 cut(s) 219, 804
BstMBI GATC 4 cut(s) 464, 511, 548, 1021
BstMWI GCNNNNNNNGC 4 cut(s) 87, 161, 170, 812
BstNI CCWGG 2 cut(s) 62, 1115
BstSCI CCNGG 4 cut(s) 60, 693, 1113, 1118
BstUI CGCG 1 cut(s) 815
BstV1I GCAGC 3 cut(s) 211, 510, 844
BstX2I RGATCY 2 cut(s) 464, 548
BstXI CCANNNNNNTGG 1 cut(s) 391
BstYI RGATCY 2 cut(s) 464, 548
BsuRI GGCC 4 cut(s) 48, 590, 698, 1118
BtsCI GGATG 4 cut(s) 372, 404, 727, 754
BtsIMutI CAGTG 2 cut(s) 423, 1003
Cac8I GCNNGC 1 cut(s) 668
CfoI GCGC 1 cut(s) 817
Cfr10I RCCGGY 1 cut(s) 448
Cfr13I GGNCC 2 cut(s) 588, 696
CseI GACGC 1 cut(s) 821
Csp6I GTAC 2 cut(s) 529, 1032
CviAII CATG 6 cut(s) 144, 230, 503, 517, 523, 826
CviQI GTAC 2 cut(s) 529, 1032
DdeI CTNAG 5 cut(s) 91, 415, 486, 642, 1160
DpnI GATC 4 cut(s) 466, 513, 550, 1023
DpnII GATC 4 cut(s) 464, 511, 548, 1021
EaeI YGGCCR 1 cut(s) 1116
Eam1104I CTCTTC 2 cut(s) 219, 313
EarI CTCTTC 2 cut(s) 219, 313
Eco130I CCWWGG 1 cut(s) 758
Eco31I GGTCTC 1 cut(s) 219
Eco88I CYCGRG 1 cut(s) 607
EcoRII CCWGG 2 cut(s) 60, 1113
EcoT14I CCWWGG 1 cut(s) 758
ErhI CCWWGG 1 cut(s) 758
Esp3I CGTCTC 1 cut(s) 804
FaeI CATG 6 cut(s) 147, 233, 506, 520, 526, 829
FaqI GGGAC 2 cut(s) 78, 1106
FatI CATG 6 cut(s) 143, 229, 502, 516, 522, 825
FauI CCCGC 1 cut(s) 799
Fnu4HI GCNGC 4 cut(s) 200, 446, 499, 858
FokI GGATG 4 cut(s) 359, 411, 734, 741
Fsp4HI GCNGC 4 cut(s) 200, 446, 499, 858
FspBI CTAG 2 cut(s) 288, 626
GlaI GCGC 1 cut(s) 816
GluI GCNGC 4 cut(s) 200, 446, 499, 858
GsaI CCCAGC 3 cut(s) 80, 437, 641
HaeIII GGCC 4 cut(s) 48, 590, 698, 1118
HapII CCGG 3 cut(s) 449, 694, 1119
HgaI GACGC 1 cut(s) 821
HhaI GCGC 1 cut(s) 817
Hin1I GRCGYC 1 cut(s) 18
Hin1II CATG 6 cut(s) 147, 233, 506, 520, 526, 829
Hin6I GCGC 1 cut(s) 815
HinP1I GCGC 1 cut(s) 815
HindIII AAGCTT 1 cut(s) 1165
HinfI GANTC 5 cut(s) 101, 211, 332, 601, 913
HpaII CCGG 3 cut(s) 449, 694, 1119
HphI GGTGA 3 cut(s) 197, 908, 953
Hpy166II GTNNAC 4 cut(s) 281, 412, 583, 944
Hpy188I TCNGA 4 cut(s) 674, 685, 918, 1163
Hpy188III TCNNGA 3 cut(s) 22, 493, 1087
Hpy8I GTNNAC 4 cut(s) 281, 412, 583, 944
Hpy99I CGWCG 1 cut(s) 23
HpyAV CCTTC 3 cut(s) 154, 932, 1129
HpyCH4III ACNGT 2 cut(s) 542, 872
HpyCH4IV ACGT 1 cut(s) 18
HpyCH4V TGCA 7 cut(s) 4, 134, 275, 355, 425, 526, 860
HpyF10VI GCNNNNNNNGC 4 cut(s) 87, 161, 170, 812
HpyF3I CTNAG 5 cut(s) 91, 415, 486, 642, 1160
HpySE526I ACGT 1 cut(s) 18
Hsp92I GRCGYC 1 cut(s) 18
Hsp92II CATG 6 cut(s) 147, 233, 506, 520, 526, 829
HspAI GCGC 1 cut(s) 815
Kzo9I GATC 4 cut(s) 464, 511, 548, 1021
LmnI GCTCC 4 cut(s) 32, 87, 822, 918
Lsp1109I GCAGC 3 cut(s) 211, 510, 844
LweI GCATC 4 cut(s) 160, 364, 712, 763
MaeI CTAG 2 cut(s) 288, 626
MaeII ACGT 1 cut(s) 18
MalI GATC 4 cut(s) 466, 513, 550, 1023
MboI GATC 4 cut(s) 464, 511, 548, 1021
MboII GAAGA 5 cut(s) 206, 300, 474, 922, 1144
MflI RGATCY 2 cut(s) 464, 548
MluCI AATT 2 cut(s) 39, 927
MlyI GAGTC 2 cut(s) 205, 595
MmeI TCCRAC 2 cut(s) 243, 376
MroXI GAANNNNTTC 1 cut(s) 105
MseI TTAA 3 cut(s) 345, 662, 1171
MslI CAYNNNNRTG 2 cut(s) 521, 745
MspI CCGG 3 cut(s) 449, 694, 1119
MspR9I CCNGG 4 cut(s) 62, 695, 1115, 1120
MvaI CCWGG 2 cut(s) 62, 1115
MvnI CGCG 1 cut(s) 815
MwoI GCNNNNNNNGC 4 cut(s) 87, 161, 170, 812
NciI CCSGG 2 cut(s) 695, 1120
NdeII GATC 4 cut(s) 464, 511, 548, 1021
NlaIII CATG 6 cut(s) 147, 233, 506, 520, 526, 829
NlaIV GGNNCC 3 cut(s) 295, 370, 920
PaeR7I CTCGAG 1 cut(s) 607
PasI CCCWGGG 1 cut(s) 61
PdmI GAANNNNTTC 1 cut(s) 105
PfeI GAWTC 3 cut(s) 101, 332, 913
PflMI CCANNNNNTGG 2 cut(s) 597, 839
PkrI GCNGC 4 cut(s) 201, 447, 500, 859
PleI GAGTC 2 cut(s) 205, 595
PpsI GAGTC 2 cut(s) 205, 595
Psp6I CCWGG 2 cut(s) 60, 1113
PspFI CCCAGC 3 cut(s) 76, 433, 637
PspGI CCWGG 2 cut(s) 60, 1113
PspN4I GGNNCC 3 cut(s) 295, 370, 920
PspPI GGNCC 2 cut(s) 588, 696
PspXI VCTCGAGB 1 cut(s) 607
PsuI RGATCY 2 cut(s) 464, 548
RsaI GTAC 2 cut(s) 530, 1033
RsaNI GTAC 2 cut(s) 529, 1032
RseI CAYNNNNRTG 2 cut(s) 521, 745
SaqAI TTAA 3 cut(s) 345, 662, 1171
SatI GCNGC 4 cut(s) 200, 446, 499, 858
Sau3AI GATC 4 cut(s) 464, 511, 548, 1021
Sau96I GGNCC 2 cut(s) 588, 696
ScaI AGTACT 1 cut(s) 530
SchI GAGTC 2 cut(s) 205, 595
ScrFI CCNGG 4 cut(s) 62, 695, 1115, 1120
SfaNI GCATC 4 cut(s) 160, 364, 712, 763
Sfr274I CTCGAG 1 cut(s) 607
SlaI CTCGAG 1 cut(s) 607
SmiMI CAYNNNNRTG 2 cut(s) 521, 745
SmlI CTYRAG 3 cut(s) 115, 607, 1087
SmoI CTYRAG 3 cut(s) 115, 607, 1087
Sse9I AATT 2 cut(s) 39, 927
SsiI CCGC 3 cut(s) 57, 446, 806
SspI AATATT 1 cut(s) 781
SspMI CTAG 2 cut(s) 288, 626
StyD4I CCNGG 4 cut(s) 60, 693, 1113, 1118
StyI CCWWGG 1 cut(s) 758
TaaI ACNGT 2 cut(s) 542, 872
TaiI ACGT 1 cut(s) 21
TaqI TCGA 2 cut(s) 475, 608
TasI AATT 2 cut(s) 39, 927
TatI WGTACW 2 cut(s) 528, 1031
TauI GCSGC 1 cut(s) 448
TfiI GAWTC 3 cut(s) 101, 332, 913
Tru1I TTAA 3 cut(s) 345, 662, 1171
Tru9I TTAA 3 cut(s) 345, 662, 1171
TscAI CASTG 2 cut(s) 423, 1003
TseI GCWGC 3 cut(s) 199, 498, 857
TspDTI ATGAA 5 cut(s) 98, 246, 511, 702, 951
TspGWI ACGGA 1 cut(s) 381
TspRI CASTG 2 cut(s) 423, 1003
Van91I CCANNNNNTGG 2 cut(s) 597, 839
XapI RAATTY 1 cut(s) 39
XhoI CTCGAG 1 cut(s) 607
XmnI GAANNNNTTC 1 cut(s) 105
XspI CTAG 2 cut(s) 288, 626
ZraI GACGTC 1 cut(s) 19
ZrmI AGTACT 1 cut(s) 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.