Rroxscaffold_7G00190170

Lycopene cyclase protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000348
Physical Location & Seq
Forward (+)
30217463 .. 30222769
5307 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00190170.1

Sequence Viewer

Length: 1389 bp
ATGTTGTTTTACTTGTCGAAATGCCAATCTGAGTCATTCAGAAGTTTTGAACACAGGAGTGTTGCTTACTCAACCATTTCTGGGCTTCCAGTTTTTGGAATTTCATTTAAGGCCAAAGGAAAAGAAGGGGACCATGAAGTTCGTTGTGTGCAAAGGAAGCTGTTGTTGGAATCCCTTGCAAATGAACTTCCTAGTGGCACAACCAGGTTCTCATCAAAAGTTGTTTCAATCGAAGAATCAGGCTACTTTAAGCTTCTACATCTTGCTGATGGAACCATCCTTAAAGTTAAGAGAGTCTTGGTTGGGTGTGATGGAGTCAACTCTGTGGTTGCAAAATGGCTAAACTTCAAGCAGCTATCTTTTACAGGAAAATCCGCTATTAGAGGTCAGGCAAACTTCAAGAGCAATCATGGGTTTGATCCCAAATCCATGCGGTTCTTCAGGCATGGTGTTAGATCTGGTGTCATCCCTTGTGATAAAAAAAAGCTGCTTATCGGTACTTCACATGAACAGAAAGGTTTGGAAGAGAATCCAGCTCAATTGAGGCAATTTGTGTTGAGCAAGCTAGGAAAGATTCCTGATGCAGTAAGGGCTACTATAGAAAACACTGAACTGGATGCTTTTATATCGTCTCCCTTGAGATATAAACCTCCTTGGGACTTGGGAGGTTCTTTGGGGACAGCTAATGTGAAAAGTGAAAACCGAAACAAGCCTCAGCTTATTCAAGTTTCAATGGAAGTAGTAGAAGAAATTGTGATTGTTGGAGCTGGAATTGCTGGCCTCACAACTTCCTTAGGACTTCACAGGCTGGGAATTCGGAGCTTGGTGTTGGAAACATCTGAGAGTTTGAGGACGACTGGATTTGCATTCTCAACATGGACAAATGCCTGGAAGGCCTTGGATGCCATTGGAATTGGGGAATCTCTTCGGAGACAACACGAGACACTTCATAGAGGAGACCATGAAGTTCGTTGCGTGCAGAGGAAGTTGTTGTTGGAAGCCCTTGCAAATGAACTTCCTAGTGGCACAATCAGGTTCTCCTCCAAGGTGGTTTCCATTGAGGAATCAGGCTACTTTAAGCTGCTGCATCTTGCTGATGGAACCATCCTCAAGGCCAAGGTCTTGGTTGGGTGTGATGGAGTGAACTCTGTGGTGGCGAAATGGCTGGGCTTCAAGCCACCGGCCTTTACAGGGAGACATGGTATAAGAGGTAGTGCGAACTACAAGAACAGTCATGGGTTTGATCCCAACTTCATGCAGTTCTTTGGCAATGGTGTTAGATCTGGTGCCATCCCTTGTGATGATAAAACAGTTTATTGGTTCTTCACTTGGACTCCAACCGACCAAGGTGAGCTTTTCACACCAATTTTGGGGCATTTTGAAGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002239 GO:0003674 GO:0003824 GO:0004497 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0016491 GO:0019748 GO:0043207 GO:0044550 GO:0050896 GO:0051704 GO:0051707 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

462

Amino Acids

51.06

Weight (kDa)

9.45

Isoelectric Point (pI)

25.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 250 - 333 2.4e-06 FAD binding domain
Lycopene_cycl PF05834 251 - 421 6.8e-08 Lycopene cyclase protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000348)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38540 AT5G05320
fragaria_vesca FvH4_1g12561 FvH4_1g12581 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_3g33121 FvH4_3g33122 FvH4_4g08974 FvH4_4g09610 FvH4_7g17841
malus_domestica MD05G1123600.v1.1 MD05G1123700.v1.1
prunus_persica Prupe.8G167400_v2.0.a1 Prupe.8G167500_v2.0.a1 Prupe.8G167700_v2.0.a1 Prupe.8G167700_v2.0.a1
pyrus_communis pycom05g11780 pycom05g11790
rosa_chinensis RchiOBHm_Chr6g0278521 RchiOBHm_Chr6g0278531 RchiOBHm_Chr6g0278551 RchiOBHm_Chr6g0278591 RchiOBHm_Chr6g0278611 RchiOBHm_Chr6g0278671 RchiOBHm_Chr6g0278691 RchiOBHm_Chr6g0278701
rosa_laevigata RLG00000013200 RLG00000013201 RLG00000013203 RLG00000013205 RLG00000013206 RLG00000013210 RLG00000013211 RLG00000013213 RLG00000013216 RLG00000013217
rosa_multiflora Rmu_sc0000258.1_g000072 Rmu_sc0000258.1_g000073 Rmu_sc0000258.1_g000082 Rmu_sc0000258.1_g000083 Rmu_sc0000258.1_g000090 Rmu_sc0000258.1_g000094 Rmu_sc0000258.1_g000096 Rmu_sc0002777.1_g000006 Rmu_sc0002777.1_g000011 Rmu_sc0002777.1_g000019 Rmu_sc0006193.1_g000001 Rmu_sc0034228.1_g000001 Rmu_ssc0000042.1_g000052 Rmu_ssc0000144.1_g000014
rosa_roxburghii Rroxscaffold_7G00189700 Rroxscaffold_7G00189710 Rroxscaffold_7G00189720 Rroxscaffold_7G00189730 Rroxscaffold_7G00189770 Rroxscaffold_7G00189800 Rroxscaffold_7G00189820 Rroxscaffold_7G00189960 Rroxscaffold_7G00190070 Rroxscaffold_7G00190090 Rroxscaffold_7G00190140 Rroxscaffold_7G00190160 Rroxscaffold_7G00190170 Rroxscaffold_7G00190270 Rroxscaffold_7G00190280 Rroxscaffold_7G00190300 Rroxscaffold_7G00190310
rosa_rugosa Rorug02G0222700 Rorug06G0117300 Rorug06G0117400 Rorug06G0117700 Rorug06G0117900 Rorug06G0118000 Rorug06G0118100 Rorug06G0118200
rosa_samantha Rh1BG066900 Rh2BG292300 Rh6BG231700 Rh6BG231800 Rh6BG232000 Rh6BG232300 Rh6BG232500 Rh6CG234100 Rh6CG234200 Rh6CG234300 Rh6CG234700 Rh6DG225400 Rh6DG225500 Rh6DG225800 Rh6DG226000 Rh6DG226300
rosa_wichuraiana Rw0G003090 Rw0G003690 Rw0G021770 Rw4G037090 Rw6G019870 Rw6G019890 Rw6G019900 Rw6G019910 Rw6G019920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1286
AccB7I CCANNNNNTGG 1 cut(s) 95
AciI CCGC 2 cut(s) 375, 433
AclWI GGATC 2 cut(s) 413, 1238
AcsI RAATTY 2 cut(s) 99, 813
AcuI CTGAAG 1 cut(s) 424
AfaI GTAC 1 cut(s) 499
AfiI CCNNNNNNNGG 4 cut(s) 81, 95, 1191, 1370
AgsI TTSAA 8 cut(s) 50, 228, 349, 400, 725, 732, 1174, 1382
AjnI CCWGG 2 cut(s) 203, 887
AjuI GAANNNNNNNTTGG 4 cut(s) 149, 181, 977, 1009
AleI CACNNNNGTG 1 cut(s) 57
Alw26I GTCTC 5 cut(s) 636, 925, 935, 951, 1189
AlwI GGATC 2 cut(s) 413, 1238
AoxI GGCC 5 cut(s) 111, 778, 894, 1113, 1182
ApeKI GCWGC 4 cut(s) 352, 487, 1081, 1084
ApoI RAATTY 2 cut(s) 99, 813
Asp700I GAANNNNTTC 1 cut(s) 924
AspS9I GGNCC 1 cut(s) 130
AsuHPI GGTGA 1 cut(s) 1361
AvaII GGWCC 1 cut(s) 130
AxyI CCTNAGG 1 cut(s) 793
BanI GGYRCC 1 cut(s) 1286
BauI CACGAG 1 cut(s) 938
BbvCI CCTCAGC 1 cut(s) 714
BbvI GCAGC 4 cut(s) 364, 474, 1068, 1071
BccI CCATC 7 cut(s) 263, 284, 305, 1091, 1112, 1130, 1298
BciT130I CCWGG 2 cut(s) 205, 889
BcoDI GTCTC 5 cut(s) 636, 925, 935, 951, 1189
BfaI CTAG 4 cut(s) 192, 566, 1020, 1387
BfmI CTRYAG 1 cut(s) 597
BglI GCCNNNNNGGC 1 cut(s) 893
BglII AGATCT 2 cut(s) 455, 1280
BisI GCNGC 4 cut(s) 353, 488, 1082, 1085
BlsI GCNGC 4 cut(s) 354, 489, 1083, 1086
Bme1390I CCNGG 2 cut(s) 205, 889
Bme18I GGWCC 1 cut(s) 130
BmgT120I GGNCC 1 cut(s) 130
BmiI GGNNCC 4 cut(s) 131, 274, 1102, 1288
BmrFI CCNGG 2 cut(s) 205, 889
BmsI GCATC 4 cut(s) 571, 607, 892, 1096
Bpu10I CCTNAGC 1 cut(s) 714
BpuEI CTTGAG 2 cut(s) 658, 1094
BsaI GGTCTC 1 cut(s) 951
BsaJI CCNNGG 5 cut(s) 653, 897, 1044, 1116, 1345
BsaXI ACNNNNNCTCC 4 cut(s) 1186, 1216, 1318, 1348
Bsc4I CCNNNNNNNGG 4 cut(s) 81, 95, 1191, 1370
Bse118I RCCGGY 1 cut(s) 1180
Bse1I ACTGG 3 cut(s) 89, 618, 862
Bse21I CCTNAGG 1 cut(s) 793
Bse3DI GCAATG 1 cut(s) 1276
BseBI CCWGG 2 cut(s) 205, 889
BseDI CCNNGG 5 cut(s) 653, 897, 1044, 1116, 1345
BseGI GGATG 6 cut(s) 276, 465, 622, 907, 1104, 1290
BseLI CCNNNNNNNGG 4 cut(s) 81, 95, 1191, 1370
BseMI GCAATG 1 cut(s) 1276
BseMII CTCAG 3 cut(s) 21, 728, 831
BseNI ACTGG 3 cut(s) 89, 618, 862
BseRI GAGGAG 2 cut(s) 969, 1030
BseXI GCAGC 4 cut(s) 364, 474, 1068, 1071
BseYI CCCAGC 2 cut(s) 808, 1165
BsgI GTGCAG 1 cut(s) 998
BshFI GGCC 5 cut(s) 113, 780, 896, 1115, 1184
BshNI GGYRCC 1 cut(s) 1286
BsiSI CCGG 1 cut(s) 1181
BslFI GGGAC 3 cut(s) 143, 671, 691
BslI CCNNNNNNNGG 4 cut(s) 81, 95, 1191, 1370
BsmAI GTCTC 5 cut(s) 636, 925, 935, 951, 1189
BsmBI CGTCTC 1 cut(s) 636
BsmFI GGGAC 3 cut(s) 143, 671, 691
BsmI GAATGC 1 cut(s) 866
BsnI GGCC 5 cut(s) 113, 780, 896, 1115, 1184
Bso31I GGTCTC 1 cut(s) 951
Bsp143I GATC 4 cut(s) 418, 455, 1243, 1280
BspACI CCGC 2 cut(s) 375, 433
BspANI GGCC 5 cut(s) 113, 780, 896, 1115, 1184
BspCNI CTCAG 3 cut(s) 22, 727, 832
BspLI GGNNCC 4 cut(s) 131, 274, 1102, 1288
BspPI GGATC 2 cut(s) 413, 1238
BspT107I GGYRCC 1 cut(s) 1286
BspTNI GGTCTC 1 cut(s) 951
BsrDI GCAATG 1 cut(s) 1276
BsrFI RCCGGY 1 cut(s) 1180
BsrI ACTGG 3 cut(s) 89, 618, 862
BssAI RCCGGY 1 cut(s) 1180
BssECI CCNNGG 5 cut(s) 653, 897, 1044, 1116, 1345
BssMI GATC 4 cut(s) 418, 455, 1243, 1280
BssSI CACGAG 1 cut(s) 938
BssT1I CCWWGG 5 cut(s) 653, 897, 1044, 1116, 1345
Bst2BI CACGAG 1 cut(s) 938
Bst2UI CCWGG 2 cut(s) 205, 889
Bst4CI ACNGT 2 cut(s) 1232, 1312
Bst6I CTCTTC 2 cut(s) 519, 930
BstC8I GCNNGC 3 cut(s) 563, 778, 977
BstDEI CTNAG 4 cut(s) 30, 714, 793, 840
BstF5I GGATG 6 cut(s) 276, 465, 622, 907, 1104, 1290
BstKTI GATC 4 cut(s) 421, 458, 1246, 1283
BstMAI GTCTC 5 cut(s) 636, 925, 935, 951, 1189
BstMBI GATC 4 cut(s) 418, 455, 1243, 1280
BstMWI GCNNNNNNNGC 5 cut(s) 157, 590, 773, 893, 902
BstNI CCWGG 2 cut(s) 205, 889
BstSCI CCNGG 2 cut(s) 203, 887
BstSFI CTRYAG 1 cut(s) 597
BstV1I GCAGC 4 cut(s) 364, 474, 1068, 1071
BstX2I RGATCY 2 cut(s) 455, 1280
BstXI CCANNNNNNTGG 1 cut(s) 1123
BstYI RGATCY 2 cut(s) 455, 1280
Bsu36I CCTNAGG 1 cut(s) 793
BsuRI GGCC 5 cut(s) 113, 780, 896, 1115, 1184
BtsCI GGATG 6 cut(s) 276, 465, 622, 907, 1104, 1290
BtsIMutI CAGTG 1 cut(s) 606
Cac8I GCNNGC 3 cut(s) 563, 778, 977
Cfr10I RCCGGY 1 cut(s) 1180
Cfr13I GGNCC 1 cut(s) 130
CsiI ACCWGGT 1 cut(s) 203
Csp6I GTAC 1 cut(s) 498
CviQI GTAC 1 cut(s) 498
DdeI CTNAG 4 cut(s) 30, 714, 793, 840
DpnI GATC 4 cut(s) 420, 457, 1245, 1282
DpnII GATC 4 cut(s) 418, 455, 1243, 1280
Eam1104I CTCTTC 2 cut(s) 519, 930
EarI CTCTTC 2 cut(s) 519, 930
Eco130I CCWWGG 5 cut(s) 653, 897, 1044, 1116, 1345
Eco147I AGGCCT 1 cut(s) 896
Eco31I GGTCTC 1 cut(s) 951
Eco47I GGWCC 1 cut(s) 130
Eco57I CTGAAG 1 cut(s) 424
Eco81I CCTNAGG 1 cut(s) 793
EcoRI GAATTC 1 cut(s) 813
EcoRII CCWGG 2 cut(s) 203, 887
EcoT14I CCWWGG 5 cut(s) 653, 897, 1044, 1116, 1345
ErhI CCWWGG 5 cut(s) 653, 897, 1044, 1116, 1345
Esp3I CGTCTC 1 cut(s) 636
FalI AAGNNNNNCTT 4 cut(s) 281, 313, 1338, 1370
FaqI GGGAC 3 cut(s) 143, 671, 691
Fnu4HI GCNGC 4 cut(s) 353, 488, 1082, 1085
FokI GGATG 6 cut(s) 263, 452, 629, 914, 1091, 1277
Fsp4HI GCNGC 4 cut(s) 353, 488, 1082, 1085
FspBI CTAG 4 cut(s) 192, 566, 1020, 1387
GluI GCNGC 4 cut(s) 353, 488, 1082, 1085
GsaI CCCAGC 2 cut(s) 812, 1169
HaeIII GGCC 5 cut(s) 113, 780, 896, 1115, 1184
HapII CCGG 1 cut(s) 1181
HincII GTYRAC 1 cut(s) 319
HindII GTYRAC 1 cut(s) 319
HindIII AAGCTT 1 cut(s) 251
HpaII CCGG 1 cut(s) 1181
HphI GGTGA 1 cut(s) 1361
Hpy166II GTNNAC 2 cut(s) 319, 1144
Hpy188I TCNGA 5 cut(s) 31, 41, 819, 841, 930
Hpy188III TCNNGA 2 cut(s) 400, 578
Hpy8I GTNNAC 2 cut(s) 319, 1144
HpyAV CCTTC 2 cut(s) 119, 886
HpyCH4III ACNGT 2 cut(s) 1232, 1312
HpyCH4V TGCA 9 cut(s) 151, 179, 332, 584, 866, 979, 1007, 1087, 1258
HpyF10VI GCNNNNNNNGC 5 cut(s) 157, 590, 773, 893, 902
HpyF3I CTNAG 4 cut(s) 30, 714, 793, 840
Kzo9I GATC 4 cut(s) 418, 455, 1243, 1280
LmnI GCTCC 2 cut(s) 764, 819
Lsp1109I GCAGC 4 cut(s) 364, 474, 1068, 1071
LweI GCATC 4 cut(s) 571, 607, 892, 1096
MabI ACCWGGT 1 cut(s) 203
MaeI CTAG 4 cut(s) 192, 566, 1020, 1387
MalI GATC 4 cut(s) 420, 457, 1245, 1282
MboI GATC 4 cut(s) 418, 455, 1243, 1280
MboII GAAGA 6 cut(s) 245, 430, 536, 758, 917, 1315
MfeI CAATTG 1 cut(s) 539
MflI RGATCY 2 cut(s) 455, 1280
MluCI AATT 8 cut(s) 99, 539, 548, 750, 771, 813, 912, 1365
MlyI GAGTC 4 cut(s) 41, 303, 324, 1327
MmeI TCCRAC 5 cut(s) 147, 742, 810, 975, 1361
MroXI GAANNNNTTC 1 cut(s) 924
MseI TTAA 5 cut(s) 108, 249, 282, 288, 1077
MslI CAYNNNNRTG 1 cut(s) 57
MspI CCGG 1 cut(s) 1181
MspR9I CCNGG 2 cut(s) 205, 889
MunI CAATTG 1 cut(s) 539
Mva1269I GAATGC 1 cut(s) 866
MvaI CCWGG 2 cut(s) 205, 889
MwoI GCNNNNNNNGC 5 cut(s) 157, 590, 773, 893, 902
NdeII GATC 4 cut(s) 418, 455, 1243, 1280
NlaIV GGNNCC 4 cut(s) 131, 274, 1102, 1288
OliI CACNNNNGTG 1 cut(s) 57
PceI AGGCCT 1 cut(s) 896
PctI GAATGC 1 cut(s) 866
PdmI GAANNNNTTC 1 cut(s) 924
PfeI GAWTC 6 cut(s) 170, 236, 529, 574, 920, 1064
PflMI CCANNNNNTGG 1 cut(s) 95
PkrI GCNGC 4 cut(s) 354, 489, 1083, 1086
PleI GAGTC 4 cut(s) 40, 302, 323, 1327
PpsI GAGTC 4 cut(s) 40, 302, 323, 1327
Psp6I CCWGG 2 cut(s) 203, 887
PspFI CCCAGC 2 cut(s) 808, 1165
PspGI CCWGG 2 cut(s) 203, 887
PspN4I GGNNCC 4 cut(s) 131, 274, 1102, 1288
PspPI GGNCC 1 cut(s) 130
PsuI RGATCY 2 cut(s) 455, 1280
RsaI GTAC 1 cut(s) 499
RsaNI GTAC 1 cut(s) 498
RseI CAYNNNNRTG 1 cut(s) 57
SaqAI TTAA 5 cut(s) 108, 249, 282, 288, 1077
SatI GCNGC 4 cut(s) 353, 488, 1082, 1085
Sau3AI GATC 4 cut(s) 418, 455, 1243, 1280
Sau96I GGNCC 1 cut(s) 130
SchI GAGTC 4 cut(s) 41, 303, 324, 1327
ScrFI CCNGG 2 cut(s) 205, 889
SexAI ACCWGGT 1 cut(s) 203
SfaNI GCATC 4 cut(s) 571, 607, 892, 1096
SfcI CTRYAG 1 cut(s) 597
SinI GGWCC 1 cut(s) 130
SmiMI CAYNNNNRTG 1 cut(s) 57
SmlI CTYRAG 2 cut(s) 637, 1109
SmoI CTYRAG 2 cut(s) 637, 1109
Sse9I AATT 8 cut(s) 99, 539, 548, 750, 771, 813, 912, 1365
SseBI AGGCCT 1 cut(s) 896
SsiI CCGC 2 cut(s) 375, 433
SspMI CTAG 4 cut(s) 192, 566, 1020, 1387
StuI AGGCCT 1 cut(s) 896
StyD4I CCNGG 2 cut(s) 203, 887
StyI CCWWGG 5 cut(s) 653, 897, 1044, 1116, 1345
TaaI ACNGT 2 cut(s) 1232, 1312
TaqI TCGA 2 cut(s) 17, 231
TasI AATT 8 cut(s) 99, 539, 548, 750, 771, 813, 912, 1365
TfiI GAWTC 6 cut(s) 170, 236, 529, 574, 920, 1064
Tru1I TTAA 5 cut(s) 108, 249, 282, 288, 1077
Tru9I TTAA 5 cut(s) 108, 249, 282, 288, 1077
TscAI CASTG 1 cut(s) 613
TseI GCWGC 4 cut(s) 352, 487, 1081, 1084
TspDTI ATGAA 8 cut(s) 93, 150, 198, 522, 938, 978, 1026, 1243
TspRI CASTG 1 cut(s) 613
Van91I CCANNNNNTGG 1 cut(s) 95
VpaK11BI GGWCC 1 cut(s) 130
XapI RAATTY 2 cut(s) 99, 813
XmnI GAANNNNTTC 1 cut(s) 924
XspI CTAG 4 cut(s) 192, 566, 1020, 1387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.