Rroxscaffold_7G00190270

Zeaxanthin epoxidase, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000348
Physical Location & Seq
Forward (+)
30341435 .. 30347252
5818 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00190270.1

Sequence Viewer

Length: 1071 bp
ATGCAAGTAGTAGAGGACGTTGTGATTGTGGGAGCTGGAATTTCTGGCCTCACAACCGCCCTGGGACTTCACAGGCTGGGCATTAGGAGCTTAGTGCTGGAATCGTTTGATAGCTTGAGGATAACAGGGTTTGCACTCACAACATGGACTAATGCGTGGAAGGCTTTAGATGCCATTGGTGTTGGTGATTATTTACGGCAGCAACACCTGACTCTTCTTGGTGGAGACCATGAAATTCGTTGTGTGAAAAGGAAGTCGCTGTTAGAAGCCCTTGCGAGTGAACTTCCTAGTGGCACCATTAGGTTCTCTTCAAAGGTTGTTTCCATTGAGGAATCAGGTTACTTTAAGCTGGTGCATCTTGCCGACGGAACCATCCTCAAAGCCAAGGTTTTGGTTGGATGTGATGGAGTAAACTCAGTGGTTGCAAAATGGCTGGGCTTCAAGCCGCCGGTCTTTACAGGAAGATCTGCCGTTCGAGGTAGTGCTGAGTTCAAGAGCAGCCATGAGTTTGATCCCATGTTCATGCAGTACTTTGGGAATGGTGTTAGATCTGGTGTAGTTCCTTGTGATGATAAAAATGTTTACTGGTACTTCACTTGGTCTCCCTCCAGCCAAGAGAAAGAGCTAGAAGAAAACCCAGCTCAGTTGAAGCAATATGTGTTAAGCAAGCTCGGAAAAGTATCAGATGAAGTAAGGGATGTTGTGGAAAACACTGATTTGGATGCTTTTATATTCTCTCCATTGAGATATAGGCATCCTTGGGAACTTCTTTGTGGAAATATTAGCAAAGGTACTGTATGTGTAGCTGGAGACGCGCTCCACCCTATGACCCCAGACATTAGACAAGGCGGCTGTGCTGCATTAGAGGATGATGTTATATTAGCAAGGTGTCTCGGTGAGGCCTTGTTGAAGAATCGGAGACAAGAAATTAGAGATGAAGGTGAAGAAGGAAAAGTGGAGGCTGATGGAAAAATAATGACTTTCTTGAGGGACAAGTTTTTCTCTCCAATCCTGGCCGGGTTGCGGTTGAAGAAGGCTGATTATGATTGTGGTAAGCTCAGAAGCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

356

Amino Acids

39.29

Weight (kDa)

6.41

Isoelectric Point (pI)

33.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 6 - 81 3.9e-07 FAD binding domain
Lycopene_cycl PF05834 6 - 141 6.6e-07 Lycopene cyclase protein
FAD_binding_3 PF01494 87 - 310 1.9e-14 FAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000348)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38540 AT5G05320
fragaria_vesca FvH4_1g12561 FvH4_1g12581 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_3g33121 FvH4_3g33122 FvH4_4g08974 FvH4_4g09610 FvH4_7g17841
malus_domestica MD05G1123600.v1.1 MD05G1123700.v1.1
prunus_persica Prupe.8G167400_v2.0.a1 Prupe.8G167500_v2.0.a1 Prupe.8G167700_v2.0.a1 Prupe.8G167700_v2.0.a1
pyrus_communis pycom05g11780 pycom05g11790
rosa_chinensis RchiOBHm_Chr6g0278521 RchiOBHm_Chr6g0278531 RchiOBHm_Chr6g0278551 RchiOBHm_Chr6g0278591 RchiOBHm_Chr6g0278611 RchiOBHm_Chr6g0278671 RchiOBHm_Chr6g0278691 RchiOBHm_Chr6g0278701
rosa_laevigata RLG00000013200 RLG00000013201 RLG00000013203 RLG00000013205 RLG00000013206 RLG00000013210 RLG00000013211 RLG00000013213 RLG00000013216 RLG00000013217
rosa_multiflora Rmu_sc0000258.1_g000072 Rmu_sc0000258.1_g000073 Rmu_sc0000258.1_g000082 Rmu_sc0000258.1_g000083 Rmu_sc0000258.1_g000090 Rmu_sc0000258.1_g000094 Rmu_sc0000258.1_g000096 Rmu_sc0002777.1_g000006 Rmu_sc0002777.1_g000011 Rmu_sc0002777.1_g000019 Rmu_sc0006193.1_g000001 Rmu_sc0034228.1_g000001 Rmu_ssc0000042.1_g000052 Rmu_ssc0000144.1_g000014
rosa_roxburghii Rroxscaffold_7G00189700 Rroxscaffold_7G00189710 Rroxscaffold_7G00189720 Rroxscaffold_7G00189730 Rroxscaffold_7G00189770 Rroxscaffold_7G00189800 Rroxscaffold_7G00189820 Rroxscaffold_7G00189960 Rroxscaffold_7G00190070 Rroxscaffold_7G00190090 Rroxscaffold_7G00190140 Rroxscaffold_7G00190160 Rroxscaffold_7G00190170 Rroxscaffold_7G00190270 Rroxscaffold_7G00190280 Rroxscaffold_7G00190300 Rroxscaffold_7G00190310
rosa_rugosa Rorug02G0222700 Rorug06G0117300 Rorug06G0117400 Rorug06G0117700 Rorug06G0117900 Rorug06G0118000 Rorug06G0118100 Rorug06G0118200
rosa_samantha Rh1BG066900 Rh2BG292300 Rh6BG231700 Rh6BG231800 Rh6BG232000 Rh6BG232300 Rh6BG232500 Rh6CG234100 Rh6CG234200 Rh6CG234300 Rh6CG234700 Rh6DG225400 Rh6DG225500 Rh6DG225800 Rh6DG226000 Rh6DG226300
rosa_wichuraiana Rw0G003090 Rw0G003690 Rw0G021770 Rw4G037090 Rw6G019870 Rw6G019890 Rw6G019900 Rw6G019910 Rw6G019920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 293
AccII CGCG 1 cut(s) 815
AciI CCGC 4 cut(s) 57, 446, 849, 1024
AclWI GGATC 1 cut(s) 506
AcoI YGGCCR 1 cut(s) 1014
AcsI RAATTY 2 cut(s) 39, 234
AfaI GTAC 3 cut(s) 530, 590, 793
AfiI CCNNNNNNNGG 1 cut(s) 1023
AgsI TTSAA 6 cut(s) 312, 442, 493, 649, 910, 1030
AjnI CCWGG 2 cut(s) 60, 1011
Alw26I GTCTC 5 cut(s) 219, 606, 804, 896, 913
AlwI GGATC 1 cut(s) 506
AoxI GGCC 3 cut(s) 46, 900, 1014
ApeKI GCWGC 3 cut(s) 199, 498, 857
ApoI RAATTY 2 cut(s) 39, 234
AspLEI GCGC 1 cut(s) 817
AsuC2I CCSGG 1 cut(s) 1018
AsuHPI GGTGA 3 cut(s) 197, 908, 953
BanI GGYRCC 1 cut(s) 293
BbvI GCAGC 3 cut(s) 211, 510, 844
BccI CCATC 3 cut(s) 380, 398, 959
BceAI ACGGC 2 cut(s) 212, 455
BciT130I CCWGG 2 cut(s) 62, 1013
BcnI CCSGG 1 cut(s) 1018
BcoDI GTCTC 5 cut(s) 219, 606, 804, 896, 913
BfaI CTAG 2 cut(s) 288, 626
BglII AGATCT 2 cut(s) 464, 548
BisI GCNGC 5 cut(s) 200, 446, 499, 850, 858
BlsI GCNGC 5 cut(s) 201, 447, 500, 851, 859
BmcAI AGTACT 1 cut(s) 530
Bme1390I CCNGG 3 cut(s) 62, 1013, 1018
BmiI GGNNCC 2 cut(s) 295, 370
BmrFI CCNGG 3 cut(s) 62, 1013, 1018
BmsI GCATC 4 cut(s) 160, 364, 712, 763
BplI GAGNNNNNCTC 2 cut(s) 801, 833
BpmI CTGGAG 2 cut(s) 592, 828
BpuEI CTTGAG 2 cut(s) 136, 1006
BpuMI CCSGG 1 cut(s) 1018
BsaI GGTCTC 2 cut(s) 219, 606
BsaJI CCNNGG 4 cut(s) 60, 61, 384, 758
BsaXI ACNNNNNCTCC 2 cut(s) 586, 616
Bsc4I CCNNNNNNNGG 1 cut(s) 1023
Bse118I RCCGGY 1 cut(s) 448
Bse1I ACTGG 1 cut(s) 590
BseBI CCWGG 2 cut(s) 62, 1013
BseDI CCNNGG 4 cut(s) 60, 61, 384, 758
BseGI GGATG 6 cut(s) 372, 404, 703, 727, 754, 874
BseLI CCNNNNNNNGG 1 cut(s) 1023
BseMII CTCAG 3 cut(s) 429, 477, 656
BseNI ACTGG 1 cut(s) 590
BseXI GCAGC 3 cut(s) 211, 510, 844
BseYI CCCAGC 3 cut(s) 76, 433, 637
Bsh1236I CGCG 1 cut(s) 815
BshFI GGCC 3 cut(s) 48, 902, 1016
BshNI GGYRCC 1 cut(s) 293
BsiSI CCGG 2 cut(s) 449, 1017
BslFI GGGAC 2 cut(s) 78, 1004
BslI CCNNNNNNNGG 1 cut(s) 1023
BsmAI GTCTC 5 cut(s) 219, 606, 804, 896, 913
BsmBI CGTCTC 1 cut(s) 804
BsmFI GGGAC 2 cut(s) 78, 1004
BsnI GGCC 3 cut(s) 48, 902, 1016
Bso31I GGTCTC 2 cut(s) 219, 606
Bsp143I GATC 3 cut(s) 464, 511, 548
BspACI CCGC 4 cut(s) 57, 446, 849, 1024
BspANI GGCC 3 cut(s) 48, 902, 1016
BspCNI CTCAG 4 cut(s) 428, 478, 655, 1071
BspFNI CGCG 1 cut(s) 815
BspLI GGNNCC 2 cut(s) 295, 370
BspPI GGATC 1 cut(s) 506
BspT107I GGYRCC 1 cut(s) 293
BspTNI GGTCTC 2 cut(s) 219, 606
BsrFI RCCGGY 1 cut(s) 448
BsrI ACTGG 1 cut(s) 590
BssAI RCCGGY 1 cut(s) 448
BssECI CCNNGG 4 cut(s) 60, 61, 384, 758
BssMI GATC 3 cut(s) 464, 511, 548
BssT1I CCWWGG 2 cut(s) 384, 758
Bst2UI CCWGG 2 cut(s) 62, 1013
Bst4CI ACNGT 1 cut(s) 796
Bst6I CTCTTC 2 cut(s) 219, 313
BstC8I GCNNGC 1 cut(s) 668
BstDEI CTNAG 5 cut(s) 91, 415, 486, 642, 1058
BstF5I GGATG 6 cut(s) 372, 404, 703, 727, 754, 874
BstFNI CGCG 1 cut(s) 815
BstHHI GCGC 1 cut(s) 817
BstKTI GATC 3 cut(s) 467, 514, 551
BstMAI GTCTC 5 cut(s) 219, 606, 804, 896, 913
BstMBI GATC 3 cut(s) 464, 511, 548
BstMWI GCNNNNNNNGC 4 cut(s) 87, 161, 170, 812
BstNI CCWGG 2 cut(s) 62, 1013
BstSCI CCNGG 3 cut(s) 60, 1011, 1016
BstUI CGCG 1 cut(s) 815
BstV1I GCAGC 3 cut(s) 211, 510, 844
BstX2I RGATCY 2 cut(s) 464, 548
BstXI CCANNNNNNTGG 1 cut(s) 391
BstYI RGATCY 2 cut(s) 464, 548
BsuRI GGCC 3 cut(s) 48, 902, 1016
BtsCI GGATG 6 cut(s) 372, 404, 703, 727, 754, 874
BtsIMutI CAGTG 2 cut(s) 423, 711
Cac8I GCNNGC 1 cut(s) 668
CfoI GCGC 1 cut(s) 817
Cfr10I RCCGGY 1 cut(s) 448
CseI GACGC 1 cut(s) 821
Csp6I GTAC 3 cut(s) 529, 589, 792
CviAII CATG 5 cut(s) 144, 230, 503, 517, 523
CviQI GTAC 3 cut(s) 529, 589, 792
DdeI CTNAG 5 cut(s) 91, 415, 486, 642, 1058
DpnI GATC 3 cut(s) 466, 513, 550
DpnII GATC 3 cut(s) 464, 511, 548
EaeI YGGCCR 1 cut(s) 1014
Eam1104I CTCTTC 2 cut(s) 219, 313
EarI CTCTTC 2 cut(s) 219, 313
Eco130I CCWWGG 2 cut(s) 384, 758
Eco147I AGGCCT 1 cut(s) 902
Eco31I GGTCTC 2 cut(s) 219, 606
EcoRII CCWGG 2 cut(s) 60, 1011
EcoT14I CCWWGG 2 cut(s) 384, 758
ErhI CCWWGG 2 cut(s) 384, 758
Esp3I CGTCTC 1 cut(s) 804
FaeI CATG 5 cut(s) 147, 233, 506, 520, 526
FaqI GGGAC 2 cut(s) 78, 1004
FatI CATG 5 cut(s) 143, 229, 502, 516, 522
Fnu4HI GCNGC 5 cut(s) 200, 446, 499, 850, 858
FokI GGATG 6 cut(s) 359, 411, 710, 734, 741, 881
Fsp4HI GCNGC 5 cut(s) 200, 446, 499, 850, 858
FspBI CTAG 2 cut(s) 288, 626
GlaI GCGC 1 cut(s) 816
GluI GCNGC 5 cut(s) 200, 446, 499, 850, 858
GsaI CCCAGC 3 cut(s) 80, 437, 641
GsuI CTGGAG 2 cut(s) 592, 828
HaeIII GGCC 3 cut(s) 48, 902, 1016
HapII CCGG 2 cut(s) 449, 1017
HgaI GACGC 1 cut(s) 821
HhaI GCGC 1 cut(s) 817
Hin1II CATG 5 cut(s) 147, 233, 506, 520, 526
Hin6I GCGC 1 cut(s) 815
HinP1I GCGC 1 cut(s) 815
HinfI GANTC 4 cut(s) 101, 211, 332, 913
HpaII CCGG 2 cut(s) 449, 1017
HphI GGTGA 3 cut(s) 197, 908, 953
Hpy166II GTNNAC 3 cut(s) 281, 412, 583
Hpy188I TCNGA 4 cut(s) 674, 685, 918, 1061
Hpy188III TCNNGA 2 cut(s) 493, 985
Hpy8I GTNNAC 3 cut(s) 281, 412, 583
Hpy99I CGWCG 1 cut(s) 368
HpyAV CCTTC 4 cut(s) 154, 932, 941, 1027
HpyCH4III ACNGT 1 cut(s) 796
HpyCH4IV ACGT 1 cut(s) 18
HpyCH4V TGCA 6 cut(s) 4, 134, 355, 425, 526, 860
HpyF10VI GCNNNNNNNGC 4 cut(s) 87, 161, 170, 812
HpyF3I CTNAG 5 cut(s) 91, 415, 486, 642, 1058
HpySE526I ACGT 1 cut(s) 18
Hsp92II CATG 5 cut(s) 147, 233, 506, 520, 526
HspAI GCGC 1 cut(s) 815
Kzo9I GATC 3 cut(s) 464, 511, 548
LmnI GCTCC 3 cut(s) 32, 87, 822
Lsp1109I GCAGC 3 cut(s) 211, 510, 844
LweI GCATC 4 cut(s) 160, 364, 712, 763
MaeI CTAG 2 cut(s) 288, 626
MaeII ACGT 1 cut(s) 18
MaeIII GTNAC 1 cut(s) 338
MalI GATC 3 cut(s) 466, 513, 550
MboI GATC 3 cut(s) 464, 511, 548
MboII GAAGA 7 cut(s) 206, 300, 474, 641, 922, 956, 1042
MflI RGATCY 2 cut(s) 464, 548
MluCI AATT 3 cut(s) 39, 234, 927
MlyI GAGTC 1 cut(s) 205
MmeI TCCRAC 1 cut(s) 376
MseI TTAA 3 cut(s) 345, 662, 1069
MslI CAYNNNNRTG 1 cut(s) 521
MspI CCGG 2 cut(s) 449, 1017
MspR9I CCNGG 3 cut(s) 62, 1013, 1018
MvaI CCWGG 2 cut(s) 62, 1013
MvnI CGCG 1 cut(s) 815
MwoI GCNNNNNNNGC 4 cut(s) 87, 161, 170, 812
NciI CCSGG 1 cut(s) 1018
NdeII GATC 3 cut(s) 464, 511, 548
NlaIII CATG 5 cut(s) 147, 233, 506, 520, 526
NlaIV GGNNCC 2 cut(s) 295, 370
PasI CCCWGGG 1 cut(s) 61
PceI AGGCCT 1 cut(s) 902
PfeI GAWTC 3 cut(s) 101, 332, 913
PkrI GCNGC 5 cut(s) 201, 447, 500, 851, 859
PleI GAGTC 1 cut(s) 205
PpsI GAGTC 1 cut(s) 205
Psp6I CCWGG 2 cut(s) 60, 1011
PspFI CCCAGC 3 cut(s) 76, 433, 637
PspGI CCWGG 2 cut(s) 60, 1011
PspN4I GGNNCC 2 cut(s) 295, 370
PsuI RGATCY 2 cut(s) 464, 548
RsaI GTAC 3 cut(s) 530, 590, 793
RsaNI GTAC 3 cut(s) 529, 589, 792
RseI CAYNNNNRTG 1 cut(s) 521
SaqAI TTAA 3 cut(s) 345, 662, 1069
SatI GCNGC 5 cut(s) 200, 446, 499, 850, 858
Sau3AI GATC 3 cut(s) 464, 511, 548
ScaI AGTACT 1 cut(s) 530
SchI GAGTC 1 cut(s) 205
ScrFI CCNGG 3 cut(s) 62, 1013, 1018
SfaNI GCATC 4 cut(s) 160, 364, 712, 763
SmiMI CAYNNNNRTG 1 cut(s) 521
SmlI CTYRAG 2 cut(s) 115, 985
SmoI CTYRAG 2 cut(s) 115, 985
Sse9I AATT 3 cut(s) 39, 234, 927
SseBI AGGCCT 1 cut(s) 902
SsiI CCGC 4 cut(s) 57, 446, 849, 1024
SspI AATATT 1 cut(s) 781
SspMI CTAG 2 cut(s) 288, 626
StuI AGGCCT 1 cut(s) 902
StyD4I CCNGG 3 cut(s) 60, 1011, 1016
StyI CCWWGG 2 cut(s) 384, 758
TaaI ACNGT 1 cut(s) 796
TaiI ACGT 1 cut(s) 21
TaqI TCGA 1 cut(s) 475
TasI AATT 3 cut(s) 39, 234, 927
TatI WGTACW 1 cut(s) 528
TauI GCSGC 2 cut(s) 448, 852
TfiI GAWTC 3 cut(s) 101, 332, 913
Tru1I TTAA 3 cut(s) 345, 662, 1069
Tru9I TTAA 3 cut(s) 345, 662, 1069
TscAI CASTG 2 cut(s) 423, 718
TseI GCWGC 3 cut(s) 199, 498, 857
TspDTI ATGAA 4 cut(s) 246, 511, 702, 951
TspGWI ACGGA 1 cut(s) 381
TspRI CASTG 2 cut(s) 423, 718
XapI RAATTY 2 cut(s) 39, 234
XspI CTAG 2 cut(s) 288, 626
ZrmI AGTACT 1 cut(s) 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.