Rmu_sc0000258.1_g000083

Zeaxanthin epoxidase, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000258.1
OG0000348
Physical Location & Seq
Reverse (-)
372244 .. 374723
2480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000258.1_g000083.1.cds

Sequence Viewer

Length: 897 bp
atgcaagtagtagaggacgttgtgattgtaggagctggaatttctggcctcacaaccgccctgggacttcacaggctgggcattaggagcttagtgctggaatcgtttgatagcttgaggataacagggtttgcactcacaacatggactaatgcgtggaaggctttagatgccattggtgttggaagatctgccattcgaggttgtgctgagttcaagagcagccatgagtttgatcccatgttcatgcagtactttgggaacggtgttagatctggtttagttccttgtgatgataaaaatgtttactgggccatcacttggactccctcgagccaagagaaagagctagaggaaaacccagctgagttgaagcgatatatgttaagcaagctaggaaaggtatcagatgaagtacgggccgttgtggaaaacaccgatttggatgcttttatatcctctccattgagatataggcatccttgggaacttatttggggaaatattagcaaaggtaatgtatgtgtggctggagacgcgctccaccccatgaccccagacattggacaaggtggctgtgctgcattagaggacggtgttgtattagcaaggtgtcttggtgaggctttgttgaagaatcggagccaagaaattagagatgaaggtgaacaaggaaaagtggaatataaaatgattgaaagagggttgaataagtatgccagtgagaggaaatggagaagttttgatcttattagtacagcttatgtggttggttttatacaggaggctgatggaaaaataatgactttcttgagggacaagtttttctctccaatcctggccgggttgctgttgaagaaggctgattatgattgtggtgagctcagaagcttttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

298

Amino Acids

33.11

Weight (kDa)

5.56

Isoelectric Point (pI)

32.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000348)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38540 AT5G05320
fragaria_vesca FvH4_1g12561 FvH4_1g12581 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_3g33121 FvH4_3g33122 FvH4_4g08974 FvH4_4g09610 FvH4_7g17841
malus_domestica MD05G1123600.v1.1 MD05G1123700.v1.1
prunus_persica Prupe.8G167400_v2.0.a1 Prupe.8G167500_v2.0.a1 Prupe.8G167700_v2.0.a1 Prupe.8G167700_v2.0.a1
pyrus_communis pycom05g11780 pycom05g11790
rosa_chinensis RchiOBHm_Chr6g0278521 RchiOBHm_Chr6g0278531 RchiOBHm_Chr6g0278551 RchiOBHm_Chr6g0278591 RchiOBHm_Chr6g0278611 RchiOBHm_Chr6g0278671 RchiOBHm_Chr6g0278691 RchiOBHm_Chr6g0278701
rosa_laevigata RLG00000013200 RLG00000013201 RLG00000013203 RLG00000013205 RLG00000013206 RLG00000013210 RLG00000013211 RLG00000013213 RLG00000013216 RLG00000013217
rosa_multiflora Rmu_sc0000258.1_g000072 Rmu_sc0000258.1_g000073 Rmu_sc0000258.1_g000082 Rmu_sc0000258.1_g000083 Rmu_sc0000258.1_g000090 Rmu_sc0000258.1_g000094 Rmu_sc0000258.1_g000096 Rmu_sc0002777.1_g000006 Rmu_sc0002777.1_g000011 Rmu_sc0002777.1_g000019 Rmu_sc0006193.1_g000001 Rmu_sc0034228.1_g000001 Rmu_ssc0000042.1_g000052 Rmu_ssc0000144.1_g000014
rosa_roxburghii Rroxscaffold_7G00189700 Rroxscaffold_7G00189710 Rroxscaffold_7G00189720 Rroxscaffold_7G00189730 Rroxscaffold_7G00189770 Rroxscaffold_7G00189800 Rroxscaffold_7G00189820 Rroxscaffold_7G00189960 Rroxscaffold_7G00190070 Rroxscaffold_7G00190090 Rroxscaffold_7G00190140 Rroxscaffold_7G00190160 Rroxscaffold_7G00190170 Rroxscaffold_7G00190270 Rroxscaffold_7G00190280 Rroxscaffold_7G00190300 Rroxscaffold_7G00190310
rosa_rugosa Rorug02G0222700 Rorug06G0117300 Rorug06G0117400 Rorug06G0117700 Rorug06G0117900 Rorug06G0118000 Rorug06G0118100 Rorug06G0118200
rosa_samantha Rh1BG066900 Rh2BG292300 Rh6BG231700 Rh6BG231800 Rh6BG232000 Rh6BG232300 Rh6BG232500 Rh6CG234100 Rh6CG234200 Rh6CG234300 Rh6CG234700 Rh6DG225400 Rh6DG225500 Rh6DG225800 Rh6DG226000 Rh6DG226300
rosa_wichuraiana Rw0G003090 Rw0G003690 Rw0G021770 Rw4G037090 Rw6G019870 Rw6G019890 Rw6G019900 Rw6G019910 Rw6G019920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 321, 563
AccII CGCG 1 cut(s) 539
AciI CCGC 1 cut(s) 57
AclWI GGATC 1 cut(s) 230
AcoI YGGCCR 1 cut(s) 840
AcsI RAATTY 1 cut(s) 39
AfaI GTAC 3 cut(s) 254, 417, 757
AfiI CCNNNNNNNGG 3 cut(s) 321, 563, 726
AgsI TTSAA 6 cut(s) 217, 373, 634, 698, 709, 856
AjnI CCWGG 2 cut(s) 60, 837
AluBI AGCT 9 cut(s) 35, 90, 114, 349, 365, 394, 761, 883, 891
AluI AGCT 9 cut(s) 35, 90, 114, 349, 365, 394, 761, 883, 891
Alw21I GWGCWC 1 cut(s) 885
Alw26I GTCTC 1 cut(s) 528
AlwI GGATC 1 cut(s) 230
Ama87I CYCGRG 1 cut(s) 331
AoxI GGCC 4 cut(s) 46, 312, 420, 840
ApeKI GCWGC 2 cut(s) 222, 581
ApoI RAATTY 1 cut(s) 39
AspLEI GCGC 1 cut(s) 541
AspS9I GGNCC 2 cut(s) 312, 420
AsuC2I CCSGG 1 cut(s) 844
AsuHPI GGTGA 3 cut(s) 632, 677, 890
AvaI CYCGRG 1 cut(s) 331
BanII GRGCYC 1 cut(s) 885
Bbv12I GWGCWC 1 cut(s) 885
BbvI GCAGC 2 cut(s) 234, 568
BccI CCATC 2 cut(s) 323, 785
BceAI ACGGC 1 cut(s) 407
BcgI CGANNNNNNTGC 2 cut(s) 428, 462
BciT130I CCWGG 2 cut(s) 62, 839
BcnI CCSGG 1 cut(s) 844
BcoDI GTCTC 1 cut(s) 528
BfaI CTAG 2 cut(s) 350, 395
BglII AGATCT 2 cut(s) 188, 272
BisI GCNGC 2 cut(s) 223, 582
BlsI GCNGC 2 cut(s) 224, 583
BmcAI AGTACT 1 cut(s) 254
Bme1390I CCNGG 3 cut(s) 62, 839, 844
BmeT110I CYCGRG 1 cut(s) 331
BmgT120I GGNCC 2 cut(s) 312, 420
BmiI GGNNCC 1 cut(s) 644
BmrFI CCNGG 3 cut(s) 62, 839, 844
BmrI ACTGGG 1 cut(s) 319
BmsI GCATC 3 cut(s) 160, 436, 487
BmuI ACTGGG 1 cut(s) 319
BplI GAGNNNNNCTC 2 cut(s) 525, 557
BpmI CTGGAG 1 cut(s) 552
BpuEI CTTGAG 2 cut(s) 136, 832
BpuMI CCSGG 1 cut(s) 844
BsaJI CCNNGG 3 cut(s) 60, 61, 482
BsaXI ACNNNNNCTCC 2 cut(s) 310, 340
Bsc4I CCNNNNNNNGG 3 cut(s) 321, 563, 726
Bse1I ACTGG 2 cut(s) 314, 720
BseBI CCWGG 2 cut(s) 62, 839
BseDI CCNNGG 3 cut(s) 60, 61, 482
BseGI GGATG 2 cut(s) 451, 478
BseLI CCNNNNNNNGG 3 cut(s) 321, 563, 726
BseMII CTCAG 2 cut(s) 201, 357
BseNI ACTGG 2 cut(s) 314, 720
BseXI GCAGC 2 cut(s) 234, 568
BseYI CCCAGC 2 cut(s) 76, 361
Bsh1236I CGCG 1 cut(s) 539
BshFI GGCC 4 cut(s) 48, 314, 422, 842
BsiHKAI GWGCWC 1 cut(s) 885
BsiHKCI CYCGRG 1 cut(s) 331
BsiSI CCGG 1 cut(s) 843
BslFI GGGAC 2 cut(s) 78, 830
BslI CCNNNNNNNGG 3 cut(s) 321, 563, 726
BsmAI GTCTC 1 cut(s) 528
BsmBI CGTCTC 1 cut(s) 528
BsmFI GGGAC 2 cut(s) 78, 830
BsnI GGCC 4 cut(s) 48, 314, 422, 842
BsoBI CYCGRG 1 cut(s) 331
Bsp1286I GDGCHC 1 cut(s) 885
Bsp143I GATC 4 cut(s) 188, 235, 272, 745
BspACI CCGC 1 cut(s) 57
BspANI GGCC 4 cut(s) 48, 314, 422, 842
BspCNI CTCAG 3 cut(s) 202, 358, 897
BspFNI CGCG 1 cut(s) 539
BspLI GGNNCC 1 cut(s) 644
BspPI GGATC 1 cut(s) 230
BsrI ACTGG 2 cut(s) 314, 720
BssECI CCNNGG 3 cut(s) 60, 61, 482
BssMI GATC 4 cut(s) 188, 235, 272, 745
BssT1I CCWWGG 1 cut(s) 482
Bst2UI CCWGG 2 cut(s) 62, 839
Bst4CI ACNGT 2 cut(s) 266, 596
BstC8I GCNNGC 1 cut(s) 392
BstDEI CTNAG 4 cut(s) 91, 210, 366, 884
BstF5I GGATG 2 cut(s) 451, 478
BstFNI CGCG 1 cut(s) 539
BstHHI GCGC 1 cut(s) 541
BstKTI GATC 4 cut(s) 191, 238, 275, 748
BstMAI GTCTC 1 cut(s) 528
BstMBI GATC 4 cut(s) 188, 235, 272, 745
BstMWI GCNNNNNNNGC 4 cut(s) 87, 161, 170, 536
BstNI CCWGG 2 cut(s) 62, 839
BstSCI CCNGG 3 cut(s) 60, 837, 842
BstUI CGCG 1 cut(s) 539
BstV1I GCAGC 2 cut(s) 234, 568
BstX2I RGATCY 2 cut(s) 188, 272
BstYI RGATCY 2 cut(s) 188, 272
BsuRI GGCC 4 cut(s) 48, 314, 422, 842
BtsCI GGATG 2 cut(s) 451, 478
BtsIMutI CAGTG 1 cut(s) 727
Cac8I GCNNGC 1 cut(s) 392
CfoI GCGC 1 cut(s) 541
Cfr13I GGNCC 2 cut(s) 312, 420
CseI GACGC 1 cut(s) 545
Csp6I GTAC 3 cut(s) 253, 416, 756
CviAII CATG 5 cut(s) 144, 227, 241, 247, 550
CviQI GTAC 3 cut(s) 253, 416, 756
DdeI CTNAG 4 cut(s) 91, 210, 366, 884
DpnI GATC 4 cut(s) 190, 237, 274, 747
DpnII GATC 4 cut(s) 188, 235, 272, 745
EaeI YGGCCR 1 cut(s) 840
Ecl136II GAGCTC 1 cut(s) 883
Eco130I CCWWGG 1 cut(s) 482
Eco24I GRGCYC 1 cut(s) 885
Eco53kI GAGCTC 1 cut(s) 883
Eco88I CYCGRG 1 cut(s) 331
EcoICRI GAGCTC 1 cut(s) 883
EcoRII CCWGG 2 cut(s) 60, 837
EcoT14I CCWWGG 1 cut(s) 482
EcoT38I GRGCYC 1 cut(s) 885
ErhI CCWWGG 1 cut(s) 482
Esp3I CGTCTC 1 cut(s) 528
FaeI CATG 5 cut(s) 147, 230, 244, 250, 553
FaqI GGGAC 2 cut(s) 78, 830
FatI CATG 5 cut(s) 143, 226, 240, 246, 549
Fnu4HI GCNGC 2 cut(s) 223, 582
FokI GGATG 2 cut(s) 458, 465
FriOI GRGCYC 1 cut(s) 885
Fsp4HI GCNGC 2 cut(s) 223, 582
FspBI CTAG 2 cut(s) 350, 395
GlaI GCGC 1 cut(s) 540
GluI GCNGC 2 cut(s) 223, 582
GsaI CCCAGC 2 cut(s) 80, 365
GsuI CTGGAG 1 cut(s) 552
HaeIII GGCC 4 cut(s) 48, 314, 422, 842
HapII CCGG 1 cut(s) 843
HgaI GACGC 1 cut(s) 545
HhaI GCGC 1 cut(s) 541
Hin1II CATG 5 cut(s) 147, 230, 244, 250, 553
Hin6I GCGC 1 cut(s) 539
HinP1I GCGC 1 cut(s) 539
HindIII AAGCTT 1 cut(s) 889
HinfI GANTC 3 cut(s) 101, 325, 637
HpaII CCGG 1 cut(s) 843
HphI GGTGA 3 cut(s) 632, 677, 890
Hpy166II GTNNAC 2 cut(s) 307, 668
Hpy188I TCNGA 3 cut(s) 409, 642, 887
Hpy188III TCNNGA 2 cut(s) 217, 811
Hpy8I GTNNAC 2 cut(s) 307, 668
HpyAV CCTTC 3 cut(s) 154, 656, 853
HpyCH4III ACNGT 2 cut(s) 266, 596
HpyCH4IV ACGT 1 cut(s) 18
HpyCH4V TGCA 4 cut(s) 4, 134, 250, 584
HpyF10VI GCNNNNNNNGC 4 cut(s) 87, 161, 170, 536
HpyF3I CTNAG 4 cut(s) 91, 210, 366, 884
HpySE526I ACGT 1 cut(s) 18
Hsp92II CATG 5 cut(s) 147, 230, 244, 250, 553
HspAI GCGC 1 cut(s) 539
Kzo9I GATC 4 cut(s) 188, 235, 272, 745
LmnI GCTCC 4 cut(s) 32, 87, 546, 642
Lsp1109I GCAGC 2 cut(s) 234, 568
LweI GCATC 3 cut(s) 160, 436, 487
MaeI CTAG 2 cut(s) 350, 395
MaeII ACGT 1 cut(s) 18
MalI GATC 4 cut(s) 190, 237, 274, 747
MboI GATC 4 cut(s) 188, 235, 272, 745
MboII GAAGA 3 cut(s) 198, 646, 868
MflI RGATCY 2 cut(s) 188, 272
MhlI GDGCHC 1 cut(s) 885
MluCI AATT 2 cut(s) 39, 651
MlyI GAGTC 1 cut(s) 319
MmeI TCCRAC 1 cut(s) 163
MseI TTAA 2 cut(s) 386, 895
MslI CAYNNNNRTG 1 cut(s) 245
MspA1I CMGCKG 1 cut(s) 365
MspI CCGG 1 cut(s) 843
MspR9I CCNGG 3 cut(s) 62, 839, 844
MvaI CCWGG 2 cut(s) 62, 839
MvnI CGCG 1 cut(s) 539
MwoI GCNNNNNNNGC 4 cut(s) 87, 161, 170, 536
NciI CCSGG 1 cut(s) 844
NdeII GATC 4 cut(s) 188, 235, 272, 745
NlaIII CATG 5 cut(s) 147, 230, 244, 250, 553
NlaIV GGNNCC 1 cut(s) 644
PaeR7I CTCGAG 1 cut(s) 331
PasI CCCWGGG 1 cut(s) 61
PfeI GAWTC 2 cut(s) 101, 637
PflMI CCANNNNNTGG 2 cut(s) 321, 563
PkrI GCNGC 2 cut(s) 224, 583
PleI GAGTC 1 cut(s) 319
PpsI GAGTC 1 cut(s) 319
Psp124BI GAGCTC 1 cut(s) 885
Psp6I CCWGG 2 cut(s) 60, 837
PspFI CCCAGC 2 cut(s) 76, 361
PspGI CCWGG 2 cut(s) 60, 837
PspN4I GGNNCC 1 cut(s) 644
PspPI GGNCC 2 cut(s) 312, 420
PspXI VCTCGAGB 1 cut(s) 331
PsuI RGATCY 2 cut(s) 188, 272
PvuII CAGCTG 1 cut(s) 365
RsaI GTAC 3 cut(s) 254, 417, 757
RsaNI GTAC 3 cut(s) 253, 416, 756
RseI CAYNNNNRTG 1 cut(s) 245
SacI GAGCTC 1 cut(s) 885
SaqAI TTAA 2 cut(s) 386, 895
SatI GCNGC 2 cut(s) 223, 582
Sau3AI GATC 4 cut(s) 188, 235, 272, 745
Sau96I GGNCC 2 cut(s) 312, 420
ScaI AGTACT 1 cut(s) 254
SchI GAGTC 1 cut(s) 319
ScrFI CCNGG 3 cut(s) 62, 839, 844
SduI GDGCHC 1 cut(s) 885
SfaNI GCATC 3 cut(s) 160, 436, 487
Sfr274I CTCGAG 1 cut(s) 331
SlaI CTCGAG 1 cut(s) 331
SmiMI CAYNNNNRTG 1 cut(s) 245
SmlI CTYRAG 3 cut(s) 115, 331, 811
SmoI CTYRAG 3 cut(s) 115, 331, 811
Sse9I AATT 2 cut(s) 39, 651
SsiI CCGC 1 cut(s) 57
SspI AATATT 1 cut(s) 505
SspMI CTAG 2 cut(s) 350, 395
SstI GAGCTC 1 cut(s) 885
StyD4I CCNGG 3 cut(s) 60, 837, 842
StyI CCWWGG 1 cut(s) 482
TaaI ACNGT 2 cut(s) 266, 596
TaiI ACGT 1 cut(s) 21
TaqI TCGA 2 cut(s) 199, 332
TasI AATT 2 cut(s) 39, 651
TatI WGTACW 2 cut(s) 252, 755
TfiI GAWTC 2 cut(s) 101, 637
Tru1I TTAA 2 cut(s) 386, 895
Tru9I TTAA 2 cut(s) 386, 895
TscAI CASTG 1 cut(s) 727
TseI GCWGC 2 cut(s) 222, 581
TspDTI ATGAA 3 cut(s) 235, 426, 675
TspRI CASTG 1 cut(s) 727
Van91I CCANNNNNTGG 2 cut(s) 321, 563
XapI RAATTY 1 cut(s) 39
XhoI CTCGAG 1 cut(s) 331
XspI CTAG 2 cut(s) 350, 395
ZrmI AGTACT 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.