Rh6CG234700

Zeaxanthin epoxidase, chloroplastic-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Reverse (-)
39819416 .. 39878942
59527 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG234700.1

Sequence Viewer

Length: 1239 bp
ATGCAACAAGTAGAGGACGTTGTGATTGTGGGAGCTGGAATTTCTGGCCTCACAACCGCCCTGGGACTTCACAGGCTGGGCATTAGGAGCTTAGTGCTGGAATCGTTTGATACCTTGAGGATAACAGGGTTTGCACTCGGAATATGGACTAATGCGTGGAGGGCTTTAGATGCCATTGGTGTTGGTGATCATTTACGGCAGCAACATCACACTGTTGTTGGGAATGTGGTTTTCTCGAGAATTTCAGGGCTTCAGACGTTTGAGATGTCATTTAAGGAGAAAGGAAAACAAGACCATGAAATGCGTTGTGTGAAAAGGAAGTTGCTGTTGGAAGCCCTTGCAAGTGAACTTCCTAGCGGCACCATTAGGTTCTCTTCAAAGGTTGTTTCCATTGAGGAATCAGGCTACTTTAAGCTGGTGCATCTTGCTGACGGAACCATCCTCAAAGCCAAGGTTTTGGTTGGATGTGATGGAGTAAACTCAGTGGTTGCAAAATGGCTGGGTTTCAAGCAGCCGGTCTTTACAGGAAGATCTGCCATTCGAGGTTGTGCTGAGTTCAAGAGCAGCCATGAGTTTGATCCCATGTTAATGCAGTACCTTGGGAATGGTGTTAGATCTGGTACCGTTCCTTGTGATGATAAAAATGTTTACTGGTTCTTCACTTGGTCTCCCTCCAGCCAAGAGAAAGAGCTAGAAGAAAACCCAGCTCAGTTGAAGCAATATGTGTTAAGCAAGCTCGGAAAGGTATCAGATGAAGTAAGGGCCGTTGTGGAAAACACTGATTTGGTTGCTTTTATATTCTCTCCATTGAGATATAGGCATCCTTGGGAACTTCTTTGGGGAAATATTAGCAAAGGTAATGTATGTGTAGCTGGAGACGCGCTCCACCCCATGACCCCAGACATTGGACAAGGTGGCTGTGCTGCATTAGAGGACGGTATTGTATTAGCAAGGTGTCTCGGTGAGGCCTTGTTGAAGAATCGGAGCCAAGAAATTAGAGATGAAGGTGAAGAAGAAAAAGTGGAATATAAAATGATTGAAAGAGGGTTGAATAATTATGCCAGTGAGAGGAAATGGAGAAGTTTTGATCTTATTAGTACAGCTTATGTGGTTGGTTTTATACAGGAGGCTGATGGAAAAATAATGACTTTCTTGAGGGACAAGTTTTTCTCTCCAATCATGGCCGGGTTGCGGTTGAAGAAGGCTGATTATGATTGTGGTAAGCTCAGAAGCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

412

Amino Acids

45.88

Weight (kDa)

7.59

Isoelectric Point (pI)

35.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 6 - 339 2.2e-28 FAD binding domain
DAO PF01266 6 - 56 1.9e-06 FAD dependent oxidoreductase
Lycopene_cycl PF05834 6 - 195 3.1e-06 Lycopene cyclase protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000348)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38540 AT5G05320
fragaria_vesca FvH4_1g12561 FvH4_1g12581 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_3g33121 FvH4_3g33122 FvH4_4g08974 FvH4_4g09610 FvH4_7g17841
malus_domestica MD05G1123600.v1.1 MD05G1123700.v1.1
prunus_persica Prupe.8G167400_v2.0.a1 Prupe.8G167500_v2.0.a1 Prupe.8G167700_v2.0.a1 Prupe.8G167700_v2.0.a1
pyrus_communis pycom05g11780 pycom05g11790
rosa_chinensis RchiOBHm_Chr6g0278521 RchiOBHm_Chr6g0278531 RchiOBHm_Chr6g0278551 RchiOBHm_Chr6g0278591 RchiOBHm_Chr6g0278611 RchiOBHm_Chr6g0278671 RchiOBHm_Chr6g0278691 RchiOBHm_Chr6g0278701
rosa_laevigata RLG00000013200 RLG00000013201 RLG00000013203 RLG00000013205 RLG00000013206 RLG00000013210 RLG00000013211 RLG00000013213 RLG00000013216 RLG00000013217
rosa_multiflora Rmu_sc0000258.1_g000072 Rmu_sc0000258.1_g000073 Rmu_sc0000258.1_g000082 Rmu_sc0000258.1_g000083 Rmu_sc0000258.1_g000090 Rmu_sc0000258.1_g000094 Rmu_sc0000258.1_g000096 Rmu_sc0002777.1_g000006 Rmu_sc0002777.1_g000011 Rmu_sc0002777.1_g000019 Rmu_sc0006193.1_g000001 Rmu_sc0034228.1_g000001 Rmu_ssc0000042.1_g000052 Rmu_ssc0000144.1_g000014
rosa_roxburghii Rroxscaffold_7G00189700 Rroxscaffold_7G00189710 Rroxscaffold_7G00189720 Rroxscaffold_7G00189730 Rroxscaffold_7G00189770 Rroxscaffold_7G00189800 Rroxscaffold_7G00189820 Rroxscaffold_7G00189960 Rroxscaffold_7G00190070 Rroxscaffold_7G00190090 Rroxscaffold_7G00190140 Rroxscaffold_7G00190160 Rroxscaffold_7G00190170 Rroxscaffold_7G00190270 Rroxscaffold_7G00190280 Rroxscaffold_7G00190300 Rroxscaffold_7G00190310
rosa_rugosa Rorug02G0222700 Rorug06G0117300 Rorug06G0117400 Rorug06G0117700 Rorug06G0117900 Rorug06G0118000 Rorug06G0118100 Rorug06G0118200
rosa_samantha Rh1BG066900 Rh2BG292300 Rh6BG231700 Rh6BG231800 Rh6BG232000 Rh6BG232300 Rh6BG232500 Rh6CG234100 Rh6CG234200 Rh6CG234300 Rh6CG234700 Rh6DG225400 Rh6DG225500 Rh6DG225800 Rh6DG226000 Rh6DG226300
rosa_wichuraiana Rw0G003090 Rw0G003690 Rw0G021770 Rw4G037090 Rw6G019870 Rw6G019890 Rw6G019900 Rw6G019910 Rw6G019920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 620
AccB1I GGYRCC 2 cut(s) 359, 620
AccB7I CCANNNNNTGG 1 cut(s) 905
AccII CGCG 1 cut(s) 881
AciI CCGC 3 cut(s) 57, 357, 1192
AclWI GGATC 1 cut(s) 572
AcoI YGGCCR 1 cut(s) 1182
AcsI RAATTY 2 cut(s) 39, 240
AcuI CTGAAG 1 cut(s) 236
AfaI GTAC 3 cut(s) 596, 622, 1099
AfiI CCNNNNNNNGG 3 cut(s) 905, 1068, 1191
AgsI TTSAA 8 cut(s) 378, 508, 559, 715, 976, 1040, 1051, 1198
AjnI CCWGG 1 cut(s) 60
AjuI GAANNNNNNNTTGG 2 cut(s) 311, 343
Alw26I GTCTC 3 cut(s) 672, 870, 962
AlwI GGATC 1 cut(s) 572
Ama87I CYCGRG 1 cut(s) 235
AoxI GGCC 4 cut(s) 46, 762, 966, 1182
ApeKI GCWGC 4 cut(s) 199, 511, 564, 923
ApoI RAATTY 2 cut(s) 39, 240
Asp718I GGTACC 1 cut(s) 620
AspLEI GCGC 1 cut(s) 883
AspS9I GGNCC 1 cut(s) 762
AsuC2I CCSGG 1 cut(s) 1186
AsuHPI GGTGA 3 cut(s) 197, 974, 1019
AvaI CYCGRG 1 cut(s) 235
BanI GGYRCC 2 cut(s) 359, 620
BbvI GCAGC 4 cut(s) 211, 523, 576, 910
BccI CCATC 3 cut(s) 446, 464, 1127
BceAI ACGGC 2 cut(s) 212, 749
BciT130I CCWGG 1 cut(s) 62
BclI TGATCA 1 cut(s) 187
BcnI CCSGG 1 cut(s) 1186
BcoDI GTCTC 3 cut(s) 672, 870, 962
BfaI CTAG 2 cut(s) 354, 692
BglII AGATCT 2 cut(s) 530, 614
BisI GCNGC 5 cut(s) 200, 358, 512, 565, 924
BlsI GCNGC 5 cut(s) 201, 359, 513, 566, 925
Bme1390I CCNGG 2 cut(s) 62, 1186
BmeT110I CYCGRG 1 cut(s) 235
BmgT120I GGNCC 1 cut(s) 762
BmiI GGNNCC 4 cut(s) 361, 436, 622, 986
BmrFI CCNGG 2 cut(s) 62, 1186
BmsI GCATC 3 cut(s) 160, 430, 829
BplI GAGNNNNNCTC 2 cut(s) 867, 899
BpmI CTGGAG 2 cut(s) 658, 894
BpuEI CTTGAG 2 cut(s) 136, 1174
BpuMI CCSGG 1 cut(s) 1186
BsaI GGTCTC 1 cut(s) 672
BsaJI CCNNGG 5 cut(s) 60, 61, 450, 598, 824
BsaXI ACNNNNNCTCC 2 cut(s) 652, 682
Bsc4I CCNNNNNNNGG 3 cut(s) 905, 1068, 1191
Bse118I RCCGGY 1 cut(s) 514
Bse1I ACTGG 2 cut(s) 656, 1062
BseBI CCWGG 1 cut(s) 62
BseDI CCNNGG 5 cut(s) 60, 61, 450, 598, 824
BseGI GGATG 3 cut(s) 438, 470, 820
BseLI CCNNNNNNNGG 3 cut(s) 905, 1068, 1191
BseMII CTCAG 3 cut(s) 495, 543, 722
BseNI ACTGG 2 cut(s) 656, 1062
BseXI GCAGC 4 cut(s) 211, 523, 576, 910
BseYI CCCAGC 3 cut(s) 76, 499, 703
Bsh1236I CGCG 1 cut(s) 881
BshFI GGCC 4 cut(s) 48, 764, 968, 1184
BshNI GGYRCC 2 cut(s) 359, 620
BsiHKCI CYCGRG 1 cut(s) 235
BsiSI CCGG 2 cut(s) 515, 1185
BslFI GGGAC 2 cut(s) 78, 1172
BslI CCNNNNNNNGG 3 cut(s) 905, 1068, 1191
BsmAI GTCTC 3 cut(s) 672, 870, 962
BsmBI CGTCTC 1 cut(s) 870
BsmFI GGGAC 2 cut(s) 78, 1172
BsnI GGCC 4 cut(s) 48, 764, 968, 1184
Bso31I GGTCTC 1 cut(s) 672
BsoBI CYCGRG 1 cut(s) 235
Bsp143I GATC 5 cut(s) 187, 530, 577, 614, 1087
BspACI CCGC 3 cut(s) 57, 357, 1192
BspANI GGCC 4 cut(s) 48, 764, 968, 1184
BspCNI CTCAG 4 cut(s) 494, 544, 721, 1239
BspFNI CGCG 1 cut(s) 881
BspLI GGNNCC 4 cut(s) 361, 436, 622, 986
BspPI GGATC 1 cut(s) 572
BspT107I GGYRCC 2 cut(s) 359, 620
BspTNI GGTCTC 1 cut(s) 672
BsrFI RCCGGY 1 cut(s) 514
BsrI ACTGG 2 cut(s) 656, 1062
BssAI RCCGGY 1 cut(s) 514
BssECI CCNNGG 5 cut(s) 60, 61, 450, 598, 824
BssMI GATC 5 cut(s) 187, 530, 577, 614, 1087
BssT1I CCWWGG 3 cut(s) 450, 598, 824
Bst2UI CCWGG 1 cut(s) 62
Bst4CI ACNGT 3 cut(s) 214, 625, 938
Bst6I CTCTTC 1 cut(s) 379
BstC8I GCNNGC 1 cut(s) 734
BstDEI CTNAG 5 cut(s) 91, 481, 552, 708, 1226
BstF5I GGATG 3 cut(s) 438, 470, 820
BstFNI CGCG 1 cut(s) 881
BstHHI GCGC 1 cut(s) 883
BstKTI GATC 5 cut(s) 190, 533, 580, 617, 1090
BstMAI GTCTC 3 cut(s) 672, 870, 962
BstMBI GATC 5 cut(s) 187, 530, 577, 614, 1087
BstMWI GCNNNNNNNGC 4 cut(s) 87, 161, 170, 878
BstNI CCWGG 1 cut(s) 62
BstSCI CCNGG 2 cut(s) 60, 1184
BstUI CGCG 1 cut(s) 881
BstV1I GCAGC 4 cut(s) 211, 523, 576, 910
BstX2I RGATCY 2 cut(s) 530, 614
BstXI CCANNNNNNTGG 1 cut(s) 457
BstYI RGATCY 2 cut(s) 530, 614
BsuRI GGCC 4 cut(s) 48, 764, 968, 1184
BtsCI GGATG 3 cut(s) 438, 470, 820
BtsIMutI CAGTG 4 cut(s) 210, 489, 777, 1069
Cac8I GCNNGC 1 cut(s) 734
CfoI GCGC 1 cut(s) 883
Cfr10I RCCGGY 1 cut(s) 514
Cfr13I GGNCC 1 cut(s) 762
CseI GACGC 1 cut(s) 887
Csp6I GTAC 3 cut(s) 595, 621, 1098
CviAII CATG 5 cut(s) 296, 569, 583, 892, 1180
CviQI GTAC 3 cut(s) 595, 621, 1098
DdeI CTNAG 5 cut(s) 91, 481, 552, 708, 1226
DpnI GATC 5 cut(s) 189, 532, 579, 616, 1089
DpnII GATC 5 cut(s) 187, 530, 577, 614, 1087
EaeI YGGCCR 1 cut(s) 1182
Eam1104I CTCTTC 1 cut(s) 379
EarI CTCTTC 1 cut(s) 379
Eco130I CCWWGG 3 cut(s) 450, 598, 824
Eco147I AGGCCT 1 cut(s) 968
Eco31I GGTCTC 1 cut(s) 672
Eco57I CTGAAG 1 cut(s) 236
Eco88I CYCGRG 1 cut(s) 235
EcoRII CCWGG 1 cut(s) 60
EcoT14I CCWWGG 3 cut(s) 450, 598, 824
ErhI CCWWGG 3 cut(s) 450, 598, 824
Esp3I CGTCTC 1 cut(s) 870
FaeI CATG 5 cut(s) 299, 572, 586, 895, 1183
FaqI GGGAC 2 cut(s) 78, 1172
FatI CATG 5 cut(s) 295, 568, 582, 891, 1179
FbaI TGATCA 1 cut(s) 187
Fnu4HI GCNGC 5 cut(s) 200, 358, 512, 565, 924
FokI GGATG 3 cut(s) 425, 477, 807
Fsp4HI GCNGC 5 cut(s) 200, 358, 512, 565, 924
FspBI CTAG 2 cut(s) 354, 692
GlaI GCGC 1 cut(s) 882
GluI GCNGC 5 cut(s) 200, 358, 512, 565, 924
GsaI CCCAGC 3 cut(s) 80, 503, 707
GsuI CTGGAG 2 cut(s) 658, 894
HaeIII GGCC 4 cut(s) 48, 764, 968, 1184
HapII CCGG 2 cut(s) 515, 1185
HgaI GACGC 1 cut(s) 887
HhaI GCGC 1 cut(s) 883
Hin1II CATG 5 cut(s) 299, 572, 586, 895, 1183
Hin6I GCGC 1 cut(s) 881
HinP1I GCGC 1 cut(s) 881
HinfI GANTC 3 cut(s) 101, 398, 979
HpaII CCGG 2 cut(s) 515, 1185
HphI GGTGA 3 cut(s) 197, 974, 1019
Hpy166II GTNNAC 3 cut(s) 347, 478, 649
Hpy188I TCNGA 6 cut(s) 140, 255, 740, 751, 984, 1229
Hpy188III TCNNGA 4 cut(s) 235, 237, 559, 1153
Hpy8I GTNNAC 3 cut(s) 347, 478, 649
HpyAV CCTTC 2 cut(s) 998, 1195
HpyCH4III ACNGT 3 cut(s) 214, 625, 938
HpyCH4IV ACGT 2 cut(s) 18, 257
HpyCH4V TGCA 7 cut(s) 4, 134, 341, 421, 491, 592, 926
HpyF10VI GCNNNNNNNGC 4 cut(s) 87, 161, 170, 878
HpyF3I CTNAG 5 cut(s) 91, 481, 552, 708, 1226
HpySE526I ACGT 2 cut(s) 18, 257
Hsp92II CATG 5 cut(s) 299, 572, 586, 895, 1183
HspAI GCGC 1 cut(s) 881
KpnI GGTACC 1 cut(s) 624
Ksp22I TGATCA 1 cut(s) 187
Kzo9I GATC 5 cut(s) 187, 530, 577, 614, 1087
LmnI GCTCC 4 cut(s) 32, 87, 888, 984
Lsp1109I GCAGC 4 cut(s) 211, 523, 576, 910
LweI GCATC 3 cut(s) 160, 430, 829
MaeI CTAG 2 cut(s) 354, 692
MaeII ACGT 2 cut(s) 18, 257
MalI GATC 5 cut(s) 189, 532, 579, 616, 1089
MboI GATC 5 cut(s) 187, 530, 577, 614, 1087
MboII GAAGA 8 cut(s) 366, 540, 649, 707, 988, 1022, 1025, 1210
MflI RGATCY 2 cut(s) 530, 614
MluCI AATT 4 cut(s) 39, 240, 993, 1054
MmeI TCCRAC 2 cut(s) 309, 442
MseI TTAA 5 cut(s) 273, 411, 587, 728, 1237
MslI CAYNNNNRTG 1 cut(s) 587
MspI CCGG 2 cut(s) 515, 1185
MspR9I CCNGG 2 cut(s) 62, 1186
MvaI CCWGG 1 cut(s) 62
MvnI CGCG 1 cut(s) 881
MwoI GCNNNNNNNGC 4 cut(s) 87, 161, 170, 878
NciI CCSGG 1 cut(s) 1186
NdeII GATC 5 cut(s) 187, 530, 577, 614, 1087
NlaIII CATG 5 cut(s) 299, 572, 586, 895, 1183
NlaIV GGNNCC 4 cut(s) 361, 436, 622, 986
PaeR7I CTCGAG 1 cut(s) 235
PasI CCCWGGG 1 cut(s) 61
PceI AGGCCT 1 cut(s) 968
PfeI GAWTC 3 cut(s) 101, 398, 979
PflMI CCANNNNNTGG 1 cut(s) 905
PkrI GCNGC 5 cut(s) 201, 359, 513, 566, 925
Psp6I CCWGG 1 cut(s) 60
PspFI CCCAGC 3 cut(s) 76, 499, 703
PspGI CCWGG 1 cut(s) 60
PspN4I GGNNCC 4 cut(s) 361, 436, 622, 986
PspPI GGNCC 1 cut(s) 762
PsuI RGATCY 2 cut(s) 530, 614
RsaI GTAC 3 cut(s) 596, 622, 1099
RsaNI GTAC 3 cut(s) 595, 621, 1098
RseI CAYNNNNRTG 1 cut(s) 587
SaqAI TTAA 5 cut(s) 273, 411, 587, 728, 1237
SatI GCNGC 5 cut(s) 200, 358, 512, 565, 924
Sau3AI GATC 5 cut(s) 187, 530, 577, 614, 1087
Sau96I GGNCC 1 cut(s) 762
ScrFI CCNGG 2 cut(s) 62, 1186
SfaNI GCATC 3 cut(s) 160, 430, 829
Sfr274I CTCGAG 1 cut(s) 235
SlaI CTCGAG 1 cut(s) 235
SmiMI CAYNNNNRTG 1 cut(s) 587
SmlI CTYRAG 3 cut(s) 115, 235, 1153
SmoI CTYRAG 3 cut(s) 115, 235, 1153
Sse9I AATT 4 cut(s) 39, 240, 993, 1054
SseBI AGGCCT 1 cut(s) 968
SsiI CCGC 3 cut(s) 57, 357, 1192
SspI AATATT 1 cut(s) 847
SspMI CTAG 2 cut(s) 354, 692
StuI AGGCCT 1 cut(s) 968
StyD4I CCNGG 2 cut(s) 60, 1184
StyI CCWWGG 3 cut(s) 450, 598, 824
TaaI ACNGT 3 cut(s) 214, 625, 938
TaiI ACGT 2 cut(s) 21, 260
TaqI TCGA 2 cut(s) 236, 541
TasI AATT 4 cut(s) 39, 240, 993, 1054
TatI WGTACW 1 cut(s) 1097
TauI GCSGC 1 cut(s) 360
TfiI GAWTC 3 cut(s) 101, 398, 979
Tru1I TTAA 5 cut(s) 273, 411, 587, 728, 1237
Tru9I TTAA 5 cut(s) 273, 411, 587, 728, 1237
TscAI CASTG 4 cut(s) 217, 489, 784, 1069
TseI GCWGC 4 cut(s) 199, 511, 564, 923
TspDTI ATGAA 3 cut(s) 312, 768, 1017
TspGWI ACGGA 1 cut(s) 447
TspRI CASTG 4 cut(s) 217, 489, 784, 1069
Van91I CCANNNNNTGG 1 cut(s) 905
XapI RAATTY 2 cut(s) 39, 240
XhoI CTCGAG 1 cut(s) 235
XspI CTAG 2 cut(s) 354, 692
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.