Rroxscaffold_7G00189820

Zeaxanthin epoxidase, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000348
Physical Location & Seq
Forward (+)
29655712 .. 29658711
3000 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00189820.1

Sequence Viewer

Length: 1239 bp
ATGGAAGTAGTAGAAGAAATTGTGATTGTTGGAGCTGGAATTGCTGGCCTTACAACTTCCTTAGGACTTCACAGGCTGGGAATTCGGAGCTTAGTGTTGGAAACATCAGAGAGTTTGAGGACGACTGGATTTGCATTCTCAACATGGACAAATGCCTGGAAGGCCTTGGATGCCATTGGAATTGGGGAATCTCTTCGGAGACAGCACGAGACACTTCATAGGAATGTTACTTACTCAACAGTTTCTGGGCTTCCAGTGTTTGAGATGTCACTGAAGGACAAGGGAAAACAAGGAGACCATGAAGTTCGTTGCGTGCAGAGGAAGTTGTTGTTGGAAACCCTTGCAAATGAACTTCCTAGTGGCACAATCAGGTTCTCCTCCAAGGTGGTTTCCATTGAGGAATCAGGCTACTTTAAGCTGCTGCATCTTGCTGATGGAACCATCCTCAAGGCCAAGGTCTTGGTTGGGTGTGACGGAGTGAACTCTGTGGTGGCGAAATGGCTGGGCTTGAAGCCACCGGCCTTTACAGGGAGACATGGTGTAAGAGGTCGTGCGAACTACAAGAACAGTCATGGGTTTGATCCCAACTTCATGCAGTTCTTTGGCAATGGTGTTAGATCTGGTGCCATCCCTTGTGATGATAAAACAGTTTATTGGTTCTTCACTTGGGCTCCAACCAACCAAGAGAAAGAGCTAGAGAAGAACCCAGCTGAGATGAAGCAATTTATGCTGAACAAGCTGGGAAATATACCTGATGAAATAAAGGCTGTGATTGGAAACACTGAATTGGATGCTTTTGTTTCCTCTCCTTTGAGATTTAGGCATCCATGGGAGCTTCTTTGGGGAAATATTAGCAAAGGCAATGTTTGTGTAGCTGGAGATGCGCTCCATCCTATGACCCCGGACCTTGGCCAAGGAGGCTGCTCCGCAATAGAAGACGGTGTTGTGTTGGCAAGATGTCTTGGTGAGGCCTGGCTGAAAAACTCACGGCAAGAAATGAAAGGTAAAAGTGAACAAGGAAAGGAGGAATATATGAAAATTGAGATGGGGTTGAGTAAGTTTGCCAATGAGAGGAGATGGAGAGGCTTTGACCTGATTAGTACAGGTTATATGGTTGCTTTAATTCAAGGGAGTGCAGGAAAAATGATGTCTATCTTGAACAAATATTTGGCTCCAATTCTAGCTAGGTGGGTGCTACAGAAGGCTGATTTTGATTGTGGAAAGCTCAGCAGCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

412

Amino Acids

45.54

Weight (kDa)

8.82

Isoelectric Point (pI)

37.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 6 - 324 3.6e-24 FAD binding domain
Lycopene_cycl PF05834 7 - 200 1.7e-07 Lycopene cyclase protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000348)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38540 AT5G05320
fragaria_vesca FvH4_1g12561 FvH4_1g12581 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_3g33121 FvH4_3g33122 FvH4_4g08974 FvH4_4g09610 FvH4_7g17841
malus_domestica MD05G1123600.v1.1 MD05G1123700.v1.1
prunus_persica Prupe.8G167400_v2.0.a1 Prupe.8G167500_v2.0.a1 Prupe.8G167700_v2.0.a1 Prupe.8G167700_v2.0.a1
pyrus_communis pycom05g11780 pycom05g11790
rosa_chinensis RchiOBHm_Chr6g0278521 RchiOBHm_Chr6g0278531 RchiOBHm_Chr6g0278551 RchiOBHm_Chr6g0278591 RchiOBHm_Chr6g0278611 RchiOBHm_Chr6g0278671 RchiOBHm_Chr6g0278691 RchiOBHm_Chr6g0278701
rosa_laevigata RLG00000013200 RLG00000013201 RLG00000013203 RLG00000013205 RLG00000013206 RLG00000013210 RLG00000013211 RLG00000013213 RLG00000013216 RLG00000013217
rosa_multiflora Rmu_sc0000258.1_g000072 Rmu_sc0000258.1_g000073 Rmu_sc0000258.1_g000082 Rmu_sc0000258.1_g000083 Rmu_sc0000258.1_g000090 Rmu_sc0000258.1_g000094 Rmu_sc0000258.1_g000096 Rmu_sc0002777.1_g000006 Rmu_sc0002777.1_g000011 Rmu_sc0002777.1_g000019 Rmu_sc0006193.1_g000001 Rmu_sc0034228.1_g000001 Rmu_ssc0000042.1_g000052 Rmu_ssc0000144.1_g000014
rosa_roxburghii Rroxscaffold_7G00189700 Rroxscaffold_7G00189710 Rroxscaffold_7G00189720 Rroxscaffold_7G00189730 Rroxscaffold_7G00189770 Rroxscaffold_7G00189800 Rroxscaffold_7G00189820 Rroxscaffold_7G00189960 Rroxscaffold_7G00190070 Rroxscaffold_7G00190090 Rroxscaffold_7G00190140 Rroxscaffold_7G00190160 Rroxscaffold_7G00190170 Rroxscaffold_7G00190270 Rroxscaffold_7G00190280 Rroxscaffold_7G00190300 Rroxscaffold_7G00190310
rosa_rugosa Rorug02G0222700 Rorug06G0117300 Rorug06G0117400 Rorug06G0117700 Rorug06G0117900 Rorug06G0118000 Rorug06G0118100 Rorug06G0118200
rosa_samantha Rh1BG066900 Rh2BG292300 Rh6BG231700 Rh6BG231800 Rh6BG232000 Rh6BG232300 Rh6BG232500 Rh6CG234100 Rh6CG234200 Rh6CG234300 Rh6CG234700 Rh6DG225400 Rh6DG225500 Rh6DG225800 Rh6DG226000 Rh6DG226300
rosa_wichuraiana Rw0G003090 Rw0G003690 Rw0G021770 Rw4G037090 Rw6G019870 Rw6G019890 Rw6G019900 Rw6G019910 Rw6G019920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 623
AciI CCGC 1 cut(s) 927
AclWI GGATC 1 cut(s) 575
AcoI YGGCCR 1 cut(s) 910
AcsI RAATTY 1 cut(s) 81
AcuI CTGAAG 1 cut(s) 293
AfaI GTAC 1 cut(s) 1102
AfiI CCNNNNNNNGG 3 cut(s) 528, 908, 1071
AgsI TTSAA 3 cut(s) 511, 1127, 1159
AjnI CCWGG 2 cut(s) 155, 971
AjuI GAANNNNNNNTTGG 4 cut(s) 314, 346, 1151, 1183
Alw26I GTCTC 4 cut(s) 193, 203, 288, 526
AlwI GGATC 1 cut(s) 575
AlwNI CAGNNNCTG 2 cut(s) 245, 1236
AoxI GGCC 6 cut(s) 46, 162, 450, 519, 910, 969
ApeKI GCWGC 4 cut(s) 418, 421, 921, 1230
ApoI RAATTY 1 cut(s) 81
Asp700I GAANNNNTTC 1 cut(s) 192
AspLEI GCGC 1 cut(s) 886
AspS9I GGNCC 1 cut(s) 904
AsuC2I CCSGG 1 cut(s) 902
AsuHPI GGTGA 1 cut(s) 977
AvaII GGWCC 1 cut(s) 904
AxyI CCTNAGG 1 cut(s) 61
BalI TGGCCA 1 cut(s) 912
BanI GGYRCC 1 cut(s) 623
BanII GRGCYC 1 cut(s) 673
BauI CACGAG 1 cut(s) 206
BbsI GAAGAC 1 cut(s) 942
BbvI GCAGC 3 cut(s) 405, 408, 908
BccI CCATC 6 cut(s) 428, 449, 635, 897, 1039, 1071
BceAI ACGGC 1 cut(s) 1004
BciT130I CCWGG 2 cut(s) 157, 973
BcnI CCSGG 1 cut(s) 902
BcoDI GTCTC 4 cut(s) 193, 203, 288, 526
BfaI CTAG 4 cut(s) 357, 695, 1181, 1185
BfmI CTRYAG 1 cut(s) 1196
BglI GCCNNNNNGGC 2 cut(s) 161, 918
BglII AGATCT 1 cut(s) 617
BisI GCNGC 4 cut(s) 419, 422, 922, 1231
BlpI GCTNAGC 1 cut(s) 1226
BlsI GCNGC 4 cut(s) 420, 423, 923, 1232
Bme1390I CCNGG 3 cut(s) 157, 902, 973
Bme18I GGWCC 1 cut(s) 904
BmgT120I GGNCC 1 cut(s) 904
BmiI GGNNCC 4 cut(s) 439, 625, 672, 1173
BmrFI CCNGG 3 cut(s) 157, 902, 973
BmsI GCATC 5 cut(s) 160, 433, 781, 832, 871
BpiI GAAGAC 1 cut(s) 942
BplI GAGNNNNNCTC 2 cut(s) 870, 902
BpmI CTGGAG 1 cut(s) 897
Bpu1102I GCTNAGC 1 cut(s) 1226
BpuEI CTTGAG 1 cut(s) 431
BpuMI CCSGG 1 cut(s) 902
BsaBI GATNNNNATC 1 cut(s) 1151
BsaI GGTCTC 1 cut(s) 288
BsaJI CCNNGG 7 cut(s) 165, 381, 453, 827, 900, 907, 913
BsaXI ACNNNNNCTCC 4 cut(s) 523, 553, 655, 685
Bsc4I CCNNNNNNNGG 3 cut(s) 528, 908, 1071
Bse118I RCCGGY 1 cut(s) 517
Bse1I ACTGG 2 cut(s) 130, 254
Bse21I CCTNAGG 1 cut(s) 61
Bse3DI GCAATG 2 cut(s) 613, 868
Bse8I GATNNNNATC 1 cut(s) 1151
BseBI CCWGG 2 cut(s) 157, 973
BseDI CCNNGG 7 cut(s) 165, 381, 453, 827, 900, 907, 913
BseGI GGATG 6 cut(s) 175, 441, 627, 796, 823, 889
BseJI GATNNNNATC 1 cut(s) 1151
BseLI CCNNNNNNNGG 3 cut(s) 528, 908, 1071
BseMI GCAATG 2 cut(s) 613, 868
BseMII CTCAG 1 cut(s) 702
BseNI ACTGG 2 cut(s) 130, 254
BseRI GAGGAG 2 cut(s) 367, 1087
BseXI GCAGC 3 cut(s) 405, 408, 908
BseYI CCCAGC 4 cut(s) 76, 502, 706, 739
BsgI GTGCAG 2 cut(s) 335, 1155
BshFI GGCC 6 cut(s) 48, 164, 452, 521, 912, 971
BshNI GGYRCC 1 cut(s) 623
BsiSI CCGG 2 cut(s) 518, 902
BslI CCNNNNNNNGG 3 cut(s) 528, 908, 1071
BsmAI GTCTC 4 cut(s) 193, 203, 288, 526
BsmI GAATGC 1 cut(s) 134
BsnI GGCC 6 cut(s) 48, 164, 452, 521, 912, 971
Bso31I GGTCTC 1 cut(s) 288
Bsp1286I GDGCHC 1 cut(s) 673
Bsp143I GATC 2 cut(s) 580, 617
Bsp1720I GCTNAGC 1 cut(s) 1226
Bsp19I CCATGG 1 cut(s) 827
BspACI CCGC 1 cut(s) 927
BspANI GGCC 6 cut(s) 48, 164, 452, 521, 912, 971
BspCNI CTCAG 2 cut(s) 703, 1239
BspLI GGNNCC 4 cut(s) 439, 625, 672, 1173
BspPI GGATC 1 cut(s) 575
BspT107I GGYRCC 1 cut(s) 623
BspTNI GGTCTC 1 cut(s) 288
BsrDI GCAATG 2 cut(s) 613, 868
BsrFI RCCGGY 1 cut(s) 517
BsrI ACTGG 2 cut(s) 130, 254
BssAI RCCGGY 1 cut(s) 517
BssECI CCNNGG 7 cut(s) 165, 381, 453, 827, 900, 907, 913
BssMI GATC 2 cut(s) 580, 617
BssSI CACGAG 1 cut(s) 206
BssT1I CCWWGG 6 cut(s) 165, 381, 453, 827, 907, 913
Bst2BI CACGAG 1 cut(s) 206
Bst2UI CCWGG 2 cut(s) 157, 973
Bst4CI ACNGT 4 cut(s) 241, 569, 649, 941
Bst6I CTCTTC 1 cut(s) 198
BstAPI GCANNNNNTGC 1 cut(s) 727
BstC8I GCNNGC 2 cut(s) 46, 314
BstDEI CTNAG 4 cut(s) 61, 91, 711, 1226
BstDSI CCRYGG 1 cut(s) 827
BstF5I GGATG 6 cut(s) 175, 441, 627, 796, 823, 889
BstHHI GCGC 1 cut(s) 886
BstKTI GATC 2 cut(s) 583, 620
BstMAI GTCTC 4 cut(s) 193, 203, 288, 526
BstMBI GATC 2 cut(s) 580, 617
BstMWI GCNNNNNNNGC 7 cut(s) 41, 161, 170, 727, 736, 881, 918
BstNI CCWGG 2 cut(s) 157, 973
BstSCI CCNGG 3 cut(s) 155, 900, 971
BstSFI CTRYAG 1 cut(s) 1196
BstV1I GCAGC 3 cut(s) 405, 408, 908
BstV2I GAAGAC 1 cut(s) 942
BstX2I RGATCY 1 cut(s) 617
BstXI CCANNNNNNTGG 1 cut(s) 460
BstYI RGATCY 1 cut(s) 617
Bsu36I CCTNAGG 1 cut(s) 61
BsuRI GGCC 6 cut(s) 48, 164, 452, 521, 912, 971
BtgI CCRYGG 1 cut(s) 827
BtsCI GGATG 6 cut(s) 175, 441, 627, 796, 823, 889
BtsIMutI CAGTG 3 cut(s) 261, 269, 780
Cac8I GCNNGC 2 cut(s) 46, 314
CaiI CAGNNNCTG 2 cut(s) 245, 1236
CfoI GCGC 1 cut(s) 886
Cfr10I RCCGGY 1 cut(s) 517
Cfr13I GGNCC 1 cut(s) 904
Csp6I GTAC 1 cut(s) 1101
CviAII CATG 6 cut(s) 144, 299, 536, 572, 592, 828
CviQI GTAC 1 cut(s) 1101
DdeI CTNAG 4 cut(s) 61, 91, 711, 1226
DpnI GATC 2 cut(s) 582, 619
DpnII GATC 2 cut(s) 580, 617
EaeI YGGCCR 1 cut(s) 910
Eam1104I CTCTTC 1 cut(s) 198
EarI CTCTTC 1 cut(s) 198
Eco130I CCWWGG 6 cut(s) 165, 381, 453, 827, 907, 913
Eco147I AGGCCT 2 cut(s) 164, 971
Eco24I GRGCYC 1 cut(s) 673
Eco31I GGTCTC 1 cut(s) 288
Eco47I GGWCC 1 cut(s) 904
Eco57I CTGAAG 1 cut(s) 293
Eco81I CCTNAGG 1 cut(s) 61
EcoRI GAATTC 1 cut(s) 81
EcoRII CCWGG 2 cut(s) 155, 971
EcoT14I CCWWGG 6 cut(s) 165, 381, 453, 827, 907, 913
EcoT38I GRGCYC 1 cut(s) 673
ErhI CCWWGG 6 cut(s) 165, 381, 453, 827, 907, 913
FaeI CATG 6 cut(s) 147, 302, 539, 575, 595, 831
FatI CATG 6 cut(s) 143, 298, 535, 571, 591, 827
Fnu4HI GCNGC 4 cut(s) 419, 422, 922, 1231
FokI GGATG 6 cut(s) 182, 428, 614, 803, 810, 876
FriOI GRGCYC 1 cut(s) 673
Fsp4HI GCNGC 4 cut(s) 419, 422, 922, 1231
FspBI CTAG 4 cut(s) 357, 695, 1181, 1185
GlaI GCGC 1 cut(s) 885
GluI GCNGC 4 cut(s) 419, 422, 922, 1231
GsaI CCCAGC 4 cut(s) 80, 506, 710, 743
GsuI CTGGAG 1 cut(s) 897
HaeIII GGCC 6 cut(s) 48, 164, 452, 521, 912, 971
HapII CCGG 2 cut(s) 518, 902
HhaI GCGC 1 cut(s) 886
Hin1II CATG 6 cut(s) 147, 302, 539, 575, 595, 831
Hin6I GCGC 1 cut(s) 884
HinP1I GCGC 1 cut(s) 884
HinfI GANTC 2 cut(s) 188, 401
HpaII CCGG 2 cut(s) 518, 902
HphI GGTGA 1 cut(s) 977
Hpy166II GTNNAC 2 cut(s) 481, 1013
Hpy188I TCNGA 4 cut(s) 87, 109, 198, 1238
Hpy188III TCNNGA 1 cut(s) 1156
Hpy8I GTNNAC 2 cut(s) 481, 1013
HpyAV CCTTC 3 cut(s) 154, 268, 1195
HpyCH4III ACNGT 4 cut(s) 241, 569, 649, 941
HpyCH4V TGCA 6 cut(s) 134, 316, 344, 424, 595, 1136
HpyF10VI GCNNNNNNNGC 7 cut(s) 41, 161, 170, 727, 736, 881, 918
HpyF3I CTNAG 4 cut(s) 61, 91, 711, 1226
Hsp92II CATG 6 cut(s) 147, 302, 539, 575, 595, 831
HspAI GCGC 1 cut(s) 884
Kzo9I GATC 2 cut(s) 580, 617
LmnI GCTCC 7 cut(s) 32, 87, 676, 832, 891, 929, 1177
Lsp1109I GCAGC 3 cut(s) 405, 408, 908
LweI GCATC 5 cut(s) 160, 433, 781, 832, 871
MaeI CTAG 4 cut(s) 357, 695, 1181, 1185
MaeIII GTNAC 3 cut(s) 226, 267, 470
MalI GATC 2 cut(s) 582, 619
MboI GATC 2 cut(s) 580, 617
MboII GAAGA 5 cut(s) 26, 185, 652, 712, 947
MflI RGATCY 1 cut(s) 617
MhlI GDGCHC 1 cut(s) 673
MlsI TGGCCA 1 cut(s) 912
MluCI AATT 9 cut(s) 18, 39, 81, 180, 722, 785, 1038, 1122, 1176
MluNI TGGCCA 1 cut(s) 912
MmeI TCCRAC 4 cut(s) 10, 78, 312, 698
Mox20I TGGCCA 1 cut(s) 912
MroXI GAANNNNTTC 1 cut(s) 192
MscI TGGCCA 1 cut(s) 912
MseI TTAA 2 cut(s) 414, 1121
MslI CAYNNNNRTG 1 cut(s) 222
Msp20I TGGCCA 1 cut(s) 912
MspA1I CMGCKG 1 cut(s) 710
MspI CCGG 2 cut(s) 518, 902
MspR9I CCNGG 3 cut(s) 157, 902, 973
Mva1269I GAATGC 1 cut(s) 134
MvaI CCWGG 2 cut(s) 157, 973
MwoI GCNNNNNNNGC 7 cut(s) 41, 161, 170, 727, 736, 881, 918
NciI CCSGG 1 cut(s) 902
NcoI CCATGG 1 cut(s) 827
NdeII GATC 2 cut(s) 580, 617
NlaIII CATG 6 cut(s) 147, 302, 539, 575, 595, 831
NlaIV GGNNCC 4 cut(s) 439, 625, 672, 1173
NmuCI GTSAC 2 cut(s) 267, 470
PceI AGGCCT 2 cut(s) 164, 971
PctI GAATGC 1 cut(s) 134
PdmI GAANNNNTTC 1 cut(s) 192
PfeI GAWTC 2 cut(s) 188, 401
PkrI GCNGC 4 cut(s) 420, 423, 923, 1232
Psp6I CCWGG 2 cut(s) 155, 971
PspFI CCCAGC 4 cut(s) 76, 502, 706, 739
PspGI CCWGG 2 cut(s) 155, 971
PspN4I GGNNCC 4 cut(s) 439, 625, 672, 1173
PspPI GGNCC 1 cut(s) 904
PstNI CAGNNNCTG 2 cut(s) 245, 1236
PsuI RGATCY 1 cut(s) 617
PvuII CAGCTG 1 cut(s) 710
RsaI GTAC 1 cut(s) 1102
RsaNI GTAC 1 cut(s) 1101
RseI CAYNNNNRTG 1 cut(s) 222
SaqAI TTAA 2 cut(s) 414, 1121
SatI GCNGC 4 cut(s) 419, 422, 922, 1231
Sau3AI GATC 2 cut(s) 580, 617
Sau96I GGNCC 1 cut(s) 904
ScrFI CCNGG 3 cut(s) 157, 902, 973
SduI GDGCHC 1 cut(s) 673
SfaNI GCATC 5 cut(s) 160, 433, 781, 832, 871
SfcI CTRYAG 1 cut(s) 1196
SinI GGWCC 1 cut(s) 904
SmiMI CAYNNNNRTG 1 cut(s) 222
SmlI CTYRAG 1 cut(s) 446
SmoI CTYRAG 1 cut(s) 446
Sse9I AATT 9 cut(s) 18, 39, 81, 180, 722, 785, 1038, 1122, 1176
SseBI AGGCCT 2 cut(s) 164, 971
SsiI CCGC 1 cut(s) 927
SspI AATATT 2 cut(s) 850, 1166
SspMI CTAG 4 cut(s) 357, 695, 1181, 1185
StuI AGGCCT 2 cut(s) 164, 971
StyD4I CCNGG 3 cut(s) 155, 900, 971
StyI CCWWGG 6 cut(s) 165, 381, 453, 827, 907, 913
TaaI ACNGT 4 cut(s) 241, 569, 649, 941
TasI AATT 9 cut(s) 18, 39, 81, 180, 722, 785, 1038, 1122, 1176
TatI WGTACW 1 cut(s) 1100
TfiI GAWTC 2 cut(s) 188, 401
Tru1I TTAA 2 cut(s) 414, 1121
Tru9I TTAA 2 cut(s) 414, 1121
TscAI CASTG 3 cut(s) 261, 276, 787
TseFI GTSAC 2 cut(s) 267, 470
TseI GCWGC 4 cut(s) 418, 421, 921, 1230
Tsp45I GTSAC 2 cut(s) 267, 470
TspDTI ATGAA 8 cut(s) 206, 315, 363, 580, 731, 771, 1013, 1049
TspGWI ACGGA 1 cut(s) 489
TspRI CASTG 3 cut(s) 261, 276, 787
VpaK11BI GGWCC 1 cut(s) 904
XapI RAATTY 1 cut(s) 81
XmnI GAANNNNTTC 1 cut(s) 192
XspI CTAG 4 cut(s) 357, 695, 1181, 1185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.