Rh6BG231700

Zeaxanthin epoxidase, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000348
Physical Location & Seq
Reverse (-)
43714719 .. 43717693
2975 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG231700.1

Sequence Viewer

Length: 978 bp
ATGTCACTGAAGGACAAGGGAAAACAAGGAGACCATGAAGTTCGTTGCGTGCAGAGGAAGTTGTTGTTGGAAGCCCTTGCAAATGAACTTCCTAGCGGCACAATCAGGTTCTCCTCCAAGGTGGTTTCCATTGATGAATCAGGCTACTTTAAGCTGCTGCATCTTGCTGATGGAACCATCCTCAAGGCCAAGGTCTTGGTTGGGTGTGACGGAGTGAACTCTGTGGTGGCGAAATGGCTGGGCTTCAAGCCACCGGCCTTTACAGGGAGACATGGTATAAGAGGTAGTGCGAACTACAAGAACAGTCATGGGTTTGATCCCAACTTCATGCAGTTCTTTGGCAATGGTGTTAGATCTGGTGCCATCCCTTGTGATGATAAAACTGTTTATTGGTACTTCACTTGGACTCCAACAAACCAAGAGAAAGAGCTAGAGAAGAACCCAGCTGAGATGAAGCAATTTATGCTGAGCAAGCTGGGAAATATACCTGATGAAATAAAGGCTGTCATTGGAAACACTGAATTGGATGCTTTTGTTTCCTCTCCTTTGAGATTTAGGCATCCCTGGGAGCTTCTTTGGGGAAATATTTGCAAAGGCAATGTTTGTGTAGCCGGAGATGCGCTCCATCCTATGACCCCGGACCTTGGCCAAGGAGGCTGCTCCGCAATTGAAGACGGTGTTGTTTTGGCAAGATGTCTTGGTGAGGCCTTGCTGAAAAACTCAAGGCAAGAAATGATGAAAGGTAAAAGTGAACAAGGAAAGGAGGAATATAAGAAAATTGAGATGGGGTTGAATAAGTTTGCCAATGAGAGGAGATGGAGGGGCATTGACCTGATTAGTACAGGTTATATGGTTGCTTTAATGCAAGGGAGTGAAGGAAAAATGATGTCTACCTTGAACAAATATTTGGCTCCTATTCTAGCAAGGTGGCTGCTACATAAGGCTGATTTTGATTGTGGAAAGCTCAGCAGCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

325

Amino Acids

36.1

Weight (kDa)

8.88

Isoelectric Point (pI)

32.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 23 - 246 4.1e-15 FAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000348)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38540 AT5G05320
fragaria_vesca FvH4_1g12561 FvH4_1g12581 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_3g33121 FvH4_3g33122 FvH4_4g08974 FvH4_4g09610 FvH4_7g17841
malus_domestica MD05G1123600.v1.1 MD05G1123700.v1.1
prunus_persica Prupe.8G167400_v2.0.a1 Prupe.8G167500_v2.0.a1 Prupe.8G167700_v2.0.a1 Prupe.8G167700_v2.0.a1
pyrus_communis pycom05g11780 pycom05g11790
rosa_chinensis RchiOBHm_Chr6g0278521 RchiOBHm_Chr6g0278531 RchiOBHm_Chr6g0278551 RchiOBHm_Chr6g0278591 RchiOBHm_Chr6g0278611 RchiOBHm_Chr6g0278671 RchiOBHm_Chr6g0278691 RchiOBHm_Chr6g0278701
rosa_laevigata RLG00000013200 RLG00000013201 RLG00000013203 RLG00000013205 RLG00000013206 RLG00000013210 RLG00000013211 RLG00000013213 RLG00000013216 RLG00000013217
rosa_multiflora Rmu_sc0000258.1_g000072 Rmu_sc0000258.1_g000073 Rmu_sc0000258.1_g000082 Rmu_sc0000258.1_g000083 Rmu_sc0000258.1_g000090 Rmu_sc0000258.1_g000094 Rmu_sc0000258.1_g000096 Rmu_sc0002777.1_g000006 Rmu_sc0002777.1_g000011 Rmu_sc0002777.1_g000019 Rmu_sc0006193.1_g000001 Rmu_sc0034228.1_g000001 Rmu_ssc0000042.1_g000052 Rmu_ssc0000144.1_g000014
rosa_roxburghii Rroxscaffold_7G00189700 Rroxscaffold_7G00189710 Rroxscaffold_7G00189720 Rroxscaffold_7G00189730 Rroxscaffold_7G00189770 Rroxscaffold_7G00189800 Rroxscaffold_7G00189820 Rroxscaffold_7G00189960 Rroxscaffold_7G00190070 Rroxscaffold_7G00190090 Rroxscaffold_7G00190140 Rroxscaffold_7G00190160 Rroxscaffold_7G00190170 Rroxscaffold_7G00190270 Rroxscaffold_7G00190280 Rroxscaffold_7G00190300 Rroxscaffold_7G00190310
rosa_rugosa Rorug02G0222700 Rorug06G0117300 Rorug06G0117400 Rorug06G0117700 Rorug06G0117900 Rorug06G0118000 Rorug06G0118100 Rorug06G0118200
rosa_samantha Rh1BG066900 Rh2BG292300 Rh6BG231700 Rh6BG231800 Rh6BG232000 Rh6BG232300 Rh6BG232500 Rh6CG234100 Rh6CG234200 Rh6CG234300 Rh6CG234700 Rh6DG225400 Rh6DG225500 Rh6DG225800 Rh6DG226000 Rh6DG226300
rosa_wichuraiana Rw0G003090 Rw0G003690 Rw0G021770 Rw4G037090 Rw6G019870 Rw6G019890 Rw6G019900 Rw6G019910 Rw6G019920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 359
AccI GTMKAC 1 cut(s) 890
AciI CCGC 2 cut(s) 96, 663
AclWI GGATC 1 cut(s) 311
AcoI YGGCCR 1 cut(s) 646
AcuI CTGAAG 1 cut(s) 29
AfaI GTAC 2 cut(s) 395, 841
AfiI CCNNNNNNNGG 3 cut(s) 264, 644, 810
AgsI TTSAA 4 cut(s) 247, 671, 793, 898
AjnI CCWGG 1 cut(s) 563
AjuI GAANNNNNNNTTGG 4 cut(s) 50, 82, 890, 922
AluBI AGCT 6 cut(s) 154, 430, 446, 475, 571, 964
AluI AGCT 6 cut(s) 154, 430, 446, 475, 571, 964
Alw26I GTCTC 2 cut(s) 24, 262
AlwI GGATC 1 cut(s) 311
AlwNI CAGNNNCTG 1 cut(s) 975
AoxI GGCC 4 cut(s) 186, 255, 646, 705
ApeKI GCWGC 5 cut(s) 154, 157, 657, 931, 969
AspLEI GCGC 1 cut(s) 622
AspS9I GGNCC 1 cut(s) 640
AsuC2I CCSGG 1 cut(s) 638
AsuHPI GGTGA 1 cut(s) 713
AvaII GGWCC 1 cut(s) 640
BalI TGGCCA 1 cut(s) 648
BanI GGYRCC 1 cut(s) 359
BbsI GAAGAC 1 cut(s) 678
BbvI GCAGC 4 cut(s) 141, 144, 644, 918
BccI CCATC 6 cut(s) 164, 185, 371, 633, 778, 810
BciT130I CCWGG 1 cut(s) 565
BcnI CCSGG 1 cut(s) 638
BcoDI GTCTC 2 cut(s) 24, 262
BfaI CTAG 3 cut(s) 93, 431, 920
BglI GCCNNNNNGGC 1 cut(s) 654
BglII AGATCT 1 cut(s) 353
BisI GCNGC 6 cut(s) 97, 155, 158, 658, 932, 970
BlpI GCTNAGC 2 cut(s) 467, 965
BlsI GCNGC 6 cut(s) 98, 156, 159, 659, 933, 971
Bme1390I CCNGG 2 cut(s) 565, 638
Bme18I GGWCC 1 cut(s) 640
BmgT120I GGNCC 1 cut(s) 640
BmiI GGNNCC 3 cut(s) 175, 361, 912
BmrFI CCNGG 2 cut(s) 565, 638
BmsI GCATC 4 cut(s) 169, 517, 568, 607
BpiI GAAGAC 1 cut(s) 678
BplI GAGNNNNNCTC 2 cut(s) 606, 638
Bpu1102I GCTNAGC 2 cut(s) 467, 965
BpuEI CTTGAG 2 cut(s) 167, 706
BpuMI CCSGG 1 cut(s) 638
BsaI GGTCTC 1 cut(s) 24
BsaJI CCNNGG 7 cut(s) 117, 189, 563, 564, 636, 643, 649
BsaXI ACNNNNNCTCC 4 cut(s) 259, 289, 391, 421
Bsc4I CCNNNNNNNGG 3 cut(s) 264, 644, 810
Bse118I RCCGGY 1 cut(s) 253
Bse3DI GCAATG 2 cut(s) 349, 604
BseBI CCWGG 1 cut(s) 565
BseDI CCNNGG 7 cut(s) 117, 189, 563, 564, 636, 643, 649
BseGI GGATG 5 cut(s) 177, 363, 532, 559, 625
BseLI CCNNNNNNNGG 3 cut(s) 264, 644, 810
BseMI GCAATG 2 cut(s) 349, 604
BseMII CTCAG 2 cut(s) 438, 458
BseRI GAGGAG 2 cut(s) 103, 826
BseXI GCAGC 4 cut(s) 141, 144, 644, 918
BseYI CCCAGC 3 cut(s) 238, 442, 475
BsgI GTGCAG 1 cut(s) 71
BshFI GGCC 4 cut(s) 188, 257, 648, 707
BshNI GGYRCC 1 cut(s) 359
BsiSI CCGG 3 cut(s) 254, 612, 638
BslI CCNNNNNNNGG 3 cut(s) 264, 644, 810
BsmAI GTCTC 2 cut(s) 24, 262
BsnI GGCC 4 cut(s) 188, 257, 648, 707
Bso31I GGTCTC 1 cut(s) 24
Bsp143I GATC 2 cut(s) 316, 353
Bsp1720I GCTNAGC 2 cut(s) 467, 965
BspACI CCGC 2 cut(s) 96, 663
BspANI GGCC 4 cut(s) 188, 257, 648, 707
BspCNI CTCAG 3 cut(s) 439, 459, 978
BspLI GGNNCC 3 cut(s) 175, 361, 912
BspPI GGATC 1 cut(s) 311
BspT107I GGYRCC 1 cut(s) 359
BspTNI GGTCTC 1 cut(s) 24
BsrDI GCAATG 2 cut(s) 349, 604
BsrFI RCCGGY 1 cut(s) 253
BssAI RCCGGY 1 cut(s) 253
BssECI CCNNGG 7 cut(s) 117, 189, 563, 564, 636, 643, 649
BssMI GATC 2 cut(s) 316, 353
BssT1I CCWWGG 4 cut(s) 117, 189, 643, 649
Bst2UI CCWGG 1 cut(s) 565
Bst4CI ACNGT 3 cut(s) 305, 385, 677
BstAPI GCANNNNNTGC 1 cut(s) 463
BstC8I GCNNGC 2 cut(s) 50, 473
BstDEI CTNAG 3 cut(s) 447, 467, 965
BstF5I GGATG 5 cut(s) 177, 363, 532, 559, 625
BstHHI GCGC 1 cut(s) 622
BstKTI GATC 2 cut(s) 319, 356
BstMAI GTCTC 2 cut(s) 24, 262
BstMBI GATC 2 cut(s) 316, 353
BstMWI GCNNNNNNNGC 4 cut(s) 463, 472, 617, 654
BstNI CCWGG 1 cut(s) 565
BstSCI CCNGG 2 cut(s) 563, 636
BstV1I GCAGC 4 cut(s) 141, 144, 644, 918
BstV2I GAAGAC 1 cut(s) 678
BstX2I RGATCY 1 cut(s) 353
BstXI CCANNNNNNTGG 1 cut(s) 196
BstYI RGATCY 1 cut(s) 353
BsuRI GGCC 4 cut(s) 188, 257, 648, 707
BtsCI GGATG 5 cut(s) 177, 363, 532, 559, 625
BtsIMutI CAGTG 2 cut(s) 5, 516
Cac8I GCNNGC 2 cut(s) 50, 473
CaiI CAGNNNCTG 1 cut(s) 975
CfoI GCGC 1 cut(s) 622
Cfr10I RCCGGY 1 cut(s) 253
Cfr13I GGNCC 1 cut(s) 640
Csp6I GTAC 2 cut(s) 394, 840
CviAII CATG 4 cut(s) 35, 272, 308, 328
CviQI GTAC 2 cut(s) 394, 840
DdeI CTNAG 3 cut(s) 447, 467, 965
DpnI GATC 2 cut(s) 318, 355
DpnII GATC 2 cut(s) 316, 353
EaeI YGGCCR 1 cut(s) 646
Eco130I CCWWGG 4 cut(s) 117, 189, 643, 649
Eco147I AGGCCT 1 cut(s) 707
Eco31I GGTCTC 1 cut(s) 24
Eco47I GGWCC 1 cut(s) 640
Eco57I CTGAAG 1 cut(s) 29
EcoRII CCWGG 1 cut(s) 563
EcoT14I CCWWGG 4 cut(s) 117, 189, 643, 649
ErhI CCWWGG 4 cut(s) 117, 189, 643, 649
FaeI CATG 4 cut(s) 38, 275, 311, 331
FatI CATG 4 cut(s) 34, 271, 307, 327
FblI GTMKAC 1 cut(s) 890
Fnu4HI GCNGC 6 cut(s) 97, 155, 158, 658, 932, 970
FokI GGATG 5 cut(s) 164, 350, 539, 546, 612
Fsp4HI GCNGC 6 cut(s) 97, 155, 158, 658, 932, 970
FspBI CTAG 3 cut(s) 93, 431, 920
GlaI GCGC 1 cut(s) 621
GluI GCNGC 6 cut(s) 97, 155, 158, 658, 932, 970
GsaI CCCAGC 3 cut(s) 242, 446, 479
HaeIII GGCC 4 cut(s) 188, 257, 648, 707
HapII CCGG 3 cut(s) 254, 612, 638
HhaI GCGC 1 cut(s) 622
Hin1II CATG 4 cut(s) 38, 275, 311, 331
Hin6I GCGC 1 cut(s) 620
HinP1I GCGC 1 cut(s) 620
HinfI GANTC 2 cut(s) 137, 406
HpaII CCGG 3 cut(s) 254, 612, 638
HphI GGTGA 1 cut(s) 713
Hpy166II GTNNAC 3 cut(s) 217, 752, 891
Hpy188I TCNGA 1 cut(s) 977
Hpy8I GTNNAC 3 cut(s) 217, 752, 891
HpyAV CCTTC 2 cut(s) 4, 869
HpyCH4III ACNGT 3 cut(s) 305, 385, 677
HpyCH4V TGCA 6 cut(s) 52, 80, 160, 331, 591, 865
HpyF10VI GCNNNNNNNGC 4 cut(s) 463, 472, 617, 654
HpyF3I CTNAG 3 cut(s) 447, 467, 965
Hsp92II CATG 4 cut(s) 38, 275, 311, 331
HspAI GCGC 1 cut(s) 620
Kzo9I GATC 2 cut(s) 316, 353
LmnI GCTCC 4 cut(s) 568, 627, 665, 916
Lsp1109I GCAGC 4 cut(s) 141, 144, 644, 918
LweI GCATC 4 cut(s) 169, 517, 568, 607
MaeI CTAG 3 cut(s) 93, 431, 920
MaeIII GTNAC 2 cut(s) 3, 206
MalI GATC 2 cut(s) 318, 355
MboI GATC 2 cut(s) 316, 353
MboII GAAGA 2 cut(s) 448, 683
MfeI CAATTG 1 cut(s) 666
MflI RGATCY 1 cut(s) 353
MlsI TGGCCA 1 cut(s) 648
MluCI AATT 4 cut(s) 458, 521, 666, 777
MluNI TGGCCA 1 cut(s) 648
MlyI GAGTC 1 cut(s) 400
MmeI TCCRAC 2 cut(s) 48, 434
Mox20I TGGCCA 1 cut(s) 648
MscI TGGCCA 1 cut(s) 648
MseI TTAA 2 cut(s) 150, 860
Msp20I TGGCCA 1 cut(s) 648
MspA1I CMGCKG 1 cut(s) 446
MspI CCGG 3 cut(s) 254, 612, 638
MspR9I CCNGG 2 cut(s) 565, 638
MunI CAATTG 1 cut(s) 666
MvaI CCWGG 1 cut(s) 565
MwoI GCNNNNNNNGC 4 cut(s) 463, 472, 617, 654
NciI CCSGG 1 cut(s) 638
NdeII GATC 2 cut(s) 316, 353
NlaIII CATG 4 cut(s) 38, 275, 311, 331
NlaIV GGNNCC 3 cut(s) 175, 361, 912
NmuCI GTSAC 2 cut(s) 3, 206
PasI CCCWGGG 1 cut(s) 564
PceI AGGCCT 1 cut(s) 707
PfeI GAWTC 1 cut(s) 137
PkrI GCNGC 6 cut(s) 98, 156, 159, 659, 933, 971
PleI GAGTC 1 cut(s) 400
PpsI GAGTC 1 cut(s) 400
Psp6I CCWGG 1 cut(s) 563
PspFI CCCAGC 3 cut(s) 238, 442, 475
PspGI CCWGG 1 cut(s) 563
PspN4I GGNNCC 3 cut(s) 175, 361, 912
PspPI GGNCC 1 cut(s) 640
PstNI CAGNNNCTG 1 cut(s) 975
PsuI RGATCY 1 cut(s) 353
PvuII CAGCTG 1 cut(s) 446
RsaI GTAC 2 cut(s) 395, 841
RsaNI GTAC 2 cut(s) 394, 840
SaqAI TTAA 2 cut(s) 150, 860
SatI GCNGC 6 cut(s) 97, 155, 158, 658, 932, 970
Sau3AI GATC 2 cut(s) 316, 353
Sau96I GGNCC 1 cut(s) 640
SchI GAGTC 1 cut(s) 400
ScrFI CCNGG 2 cut(s) 565, 638
SfaNI GCATC 4 cut(s) 169, 517, 568, 607
SinI GGWCC 1 cut(s) 640
SmlI CTYRAG 2 cut(s) 182, 721
SmoI CTYRAG 2 cut(s) 182, 721
Sse9I AATT 4 cut(s) 458, 521, 666, 777
SseBI AGGCCT 1 cut(s) 707
SsiI CCGC 2 cut(s) 96, 663
SspI AATATT 2 cut(s) 586, 905
SspMI CTAG 3 cut(s) 93, 431, 920
StuI AGGCCT 1 cut(s) 707
StyD4I CCNGG 2 cut(s) 563, 636
StyI CCWWGG 4 cut(s) 117, 189, 643, 649
TaaI ACNGT 3 cut(s) 305, 385, 677
TasI AATT 4 cut(s) 458, 521, 666, 777
TatI WGTACW 1 cut(s) 839
TauI GCSGC 1 cut(s) 99
TfiI GAWTC 1 cut(s) 137
Tru1I TTAA 2 cut(s) 150, 860
Tru9I TTAA 2 cut(s) 150, 860
TscAI CASTG 2 cut(s) 12, 523
TseFI GTSAC 2 cut(s) 3, 206
TseI GCWGC 5 cut(s) 154, 157, 657, 931, 969
Tsp45I GTSAC 2 cut(s) 3, 206
TspDTI ATGAA 7 cut(s) 51, 99, 150, 316, 467, 507, 752
TspGWI ACGGA 1 cut(s) 225
TspRI CASTG 2 cut(s) 12, 523
VpaK11BI GGWCC 1 cut(s) 640
XmiI GTMKAC 1 cut(s) 890
XspI CTAG 3 cut(s) 93, 431, 920
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.