Rw0G021770

Zeaxanthin epoxidase, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig01009
OG0000348
Physical Location & Seq
Reverse (-)
16081 .. 19041
2961 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G021770.1

Sequence Viewer

Length: 1263 bp
ATGCAAGTAGTAGAGGACGTTGTGATTGTAGGAGCTGGAATTTCTGGCCTCACAACCGCCCTGGGACTTCACAGGGACTCTTTCTTTCTTTCTTTGCTGGGCATTAGGAGCTTAGTGCTGGAATCGTTTCATAGCTTGAGGATAACAGGGTTTGCACTCACAACATGGACTAATGCGTGGAAGGCTTTAGATGCCATTGGTGTTGGTGATTATTTACGGCAGCAACACCTGACTCTTCTTGGGAATGTGGTTTTCTCGAGAATTTCAGGGCTTCAGACGTTTGAGATGTCATTTAAGGAGAAAGGAAAACATGGAGACCATGAAAATCGTTGTGTGAAAAGGAAGTTGCTGTTGGAAGCCCTTGCAAGTGAACTTCCTAGTGGCACCATTAGGTTCTCTTCAAAAGTTGTTTCCATTGAGGAATCAGGCTACTTTAAGCTGGTGCATCTTGCTGACGGAACCATCCTCAAAGCCAAGGTTTTGGTTGGATGTGATGGAGTAAACTCAGTGGTTGCAAAATGGCTGGGTTTCAAGCCGCCGGTCTTTACAGGAAGATCTGCCATTCGAGGTTGTGCTGAGTTCAAGAGCAGCCATGAGTTTGATCCCATGTTAATGCAGTACCTTGGGAATGGTGTTAGATCTGGTACCGTTCCTTGTGATGATAAAAATGTTTACTGGTTCTTCTCTTGGTCTCCCTCCAGCCAAGAGAAAGAGCTAGAAGAAAACCCAGCTCAGTTGAAGCAATATATGTTAAGCAAGCTCGGGAAGGTATCAGATGAAGTAAGGGCTGTTGCGGAAAACACTAATTTGGATGCTTTTATATCCTCTCCCTTGAGATATAGGCATCCTTGGGAGCTTCTTTGGGGAAATATTAGCAAAGGTACTGTATGTGTAGCTGGAGACGCGCTCCACCCTATGACCCCAGACATTGCACAAGGCGGCTGTGCTGCATTAGAGGACGGTGTTGTATTAGCAAGGTGTCTTGGTGAGGCCTTGTTGAAGAATCGGAGGCAAGAAATTAGAAATGAAGGTGAACAAGGAAAAGAGGAATATAAAATGATTGAAAGAGGGTTGAATAAGTATGCCAGTGAGAGGAAATGGAGAAGTTTTGATCTTATTAGTGCAGCTTATGTGGTTGGTTTTATACAGGAGGCTCATGGAAAAATAATGACTTTCTTGAGGAACAAGTTTTTTACTCCAATCCTGGCTGGGTTGCTGTTGAAGAAGGCTGATTATGATTGTGGTAAGCTCAGAAGCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

420

Amino Acids

46.63

Weight (kDa)

8.76

Isoelectric Point (pI)

35.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 6 - 333 3.9e-21 FAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000348)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38540 AT5G05320
fragaria_vesca FvH4_1g12561 FvH4_1g12581 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_3g33121 FvH4_3g33122 FvH4_4g08974 FvH4_4g09610 FvH4_7g17841
malus_domestica MD05G1123600.v1.1 MD05G1123700.v1.1
prunus_persica Prupe.8G167400_v2.0.a1 Prupe.8G167500_v2.0.a1 Prupe.8G167700_v2.0.a1 Prupe.8G167700_v2.0.a1
pyrus_communis pycom05g11780 pycom05g11790
rosa_chinensis RchiOBHm_Chr6g0278521 RchiOBHm_Chr6g0278531 RchiOBHm_Chr6g0278551 RchiOBHm_Chr6g0278591 RchiOBHm_Chr6g0278611 RchiOBHm_Chr6g0278671 RchiOBHm_Chr6g0278691 RchiOBHm_Chr6g0278701
rosa_laevigata RLG00000013200 RLG00000013201 RLG00000013203 RLG00000013205 RLG00000013206 RLG00000013210 RLG00000013211 RLG00000013213 RLG00000013216 RLG00000013217
rosa_multiflora Rmu_sc0000258.1_g000072 Rmu_sc0000258.1_g000073 Rmu_sc0000258.1_g000082 Rmu_sc0000258.1_g000083 Rmu_sc0000258.1_g000090 Rmu_sc0000258.1_g000094 Rmu_sc0000258.1_g000096 Rmu_sc0002777.1_g000006 Rmu_sc0002777.1_g000011 Rmu_sc0002777.1_g000019 Rmu_sc0006193.1_g000001 Rmu_sc0034228.1_g000001 Rmu_ssc0000042.1_g000052 Rmu_ssc0000144.1_g000014
rosa_roxburghii Rroxscaffold_7G00189700 Rroxscaffold_7G00189710 Rroxscaffold_7G00189720 Rroxscaffold_7G00189730 Rroxscaffold_7G00189770 Rroxscaffold_7G00189800 Rroxscaffold_7G00189820 Rroxscaffold_7G00189960 Rroxscaffold_7G00190070 Rroxscaffold_7G00190090 Rroxscaffold_7G00190140 Rroxscaffold_7G00190160 Rroxscaffold_7G00190170 Rroxscaffold_7G00190270 Rroxscaffold_7G00190280 Rroxscaffold_7G00190300 Rroxscaffold_7G00190310
rosa_rugosa Rorug02G0222700 Rorug06G0117300 Rorug06G0117400 Rorug06G0117700 Rorug06G0117900 Rorug06G0118000 Rorug06G0118100 Rorug06G0118200
rosa_samantha Rh1BG066900 Rh2BG292300 Rh6BG231700 Rh6BG231800 Rh6BG232000 Rh6BG232300 Rh6BG232500 Rh6CG234100 Rh6CG234200 Rh6CG234300 Rh6CG234700 Rh6DG225400 Rh6DG225500 Rh6DG225800 Rh6DG226000 Rh6DG226300
rosa_wichuraiana Rw0G003090 Rw0G003690 Rw0G021770 Rw4G037090 Rw6G019870 Rw6G019890 Rw6G019900 Rw6G019910 Rw6G019920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 644
AccB1I GGYRCC 2 cut(s) 383, 644
AccII CGCG 1 cut(s) 905
AciI CCGC 4 cut(s) 57, 536, 794, 939
AclWI GGATC 1 cut(s) 596
AcsI RAATTY 2 cut(s) 39, 261
AcuI CTGAAG 1 cut(s) 257
AfaI GTAC 3 cut(s) 620, 646, 883
AfiI CCNNNNNNNGG 1 cut(s) 1092
AgsI TTSAA 8 cut(s) 402, 532, 583, 739, 1000, 1064, 1075, 1222
AjnI CCWGG 2 cut(s) 60, 1203
AjuI GAANNNNNNNTTGG 2 cut(s) 335, 367
Alw26I GTCTC 3 cut(s) 309, 696, 894
AlwI GGATC 1 cut(s) 596
Ama87I CYCGRG 2 cut(s) 256, 761
AoxI GGCC 2 cut(s) 46, 990
ApeKI GCWGC 4 cut(s) 220, 588, 947, 1124
ApoI RAATTY 2 cut(s) 39, 261
Asp700I GAANNNNTTC 1 cut(s) 126
Asp718I GGTACC 1 cut(s) 644
AspLEI GCGC 1 cut(s) 907
AsuHPI GGTGA 3 cut(s) 218, 998, 1043
AvaI CYCGRG 2 cut(s) 256, 761
BanI GGYRCC 2 cut(s) 383, 644
BbvI GCAGC 4 cut(s) 232, 600, 934, 1136
BccI CCATC 2 cut(s) 470, 488
BceAI ACGGC 1 cut(s) 233
BciT130I CCWGG 2 cut(s) 62, 1205
BcoDI GTCTC 3 cut(s) 309, 696, 894
BfaI CTAG 2 cut(s) 378, 716
BglII AGATCT 2 cut(s) 554, 638
BisI GCNGC 6 cut(s) 221, 536, 589, 940, 948, 1125
BlsI GCNGC 6 cut(s) 222, 537, 590, 941, 949, 1126
Bme1390I CCNGG 2 cut(s) 62, 1205
BmeT110I CYCGRG 2 cut(s) 256, 761
BmiI GGNNCC 3 cut(s) 385, 460, 646
BmrFI CCNGG 2 cut(s) 62, 1205
BmsI GCATC 4 cut(s) 181, 454, 802, 853
BplI GAGNNNNNCTC 2 cut(s) 891, 923
BpmI CTGGAG 2 cut(s) 682, 918
BpuEI CTTGAG 3 cut(s) 157, 853, 1198
BsaI GGTCTC 2 cut(s) 309, 696
BsaJI CCNNGG 5 cut(s) 60, 61, 474, 622, 848
Bsc4I CCNNNNNNNGG 1 cut(s) 1092
Bse118I RCCGGY 1 cut(s) 538
Bse1I ACTGG 2 cut(s) 680, 1086
Bse3DI GCAATG 1 cut(s) 927
BseBI CCWGG 2 cut(s) 62, 1205
BseDI CCNNGG 5 cut(s) 60, 61, 474, 622, 848
BseGI GGATG 4 cut(s) 462, 494, 817, 844
BseLI CCNNNNNNNGG 1 cut(s) 1092
BseMI GCAATG 1 cut(s) 927
BseMII CTCAG 3 cut(s) 519, 567, 746
BseNI ACTGG 2 cut(s) 680, 1086
BseXI GCAGC 4 cut(s) 232, 600, 934, 1136
BseYI CCCAGC 4 cut(s) 97, 523, 727, 1208
BsgI GTGCAG 1 cut(s) 1143
Bsh1236I CGCG 1 cut(s) 905
BshFI GGCC 2 cut(s) 48, 992
BshNI GGYRCC 2 cut(s) 383, 644
BsiHKCI CYCGRG 2 cut(s) 256, 761
BsiSI CCGG 1 cut(s) 539
BslFI GGGAC 2 cut(s) 78, 89
BslI CCNNNNNNNGG 1 cut(s) 1092
BsmAI GTCTC 3 cut(s) 309, 696, 894
BsmBI CGTCTC 1 cut(s) 894
BsmFI GGGAC 2 cut(s) 78, 89
BsnI GGCC 2 cut(s) 48, 992
Bso31I GGTCTC 2 cut(s) 309, 696
BsoBI CYCGRG 2 cut(s) 256, 761
Bsp143I GATC 4 cut(s) 554, 601, 638, 1111
BspACI CCGC 4 cut(s) 57, 536, 794, 939
BspANI GGCC 2 cut(s) 48, 992
BspCNI CTCAG 4 cut(s) 518, 568, 745, 1263
BspFNI CGCG 1 cut(s) 905
BspLI GGNNCC 3 cut(s) 385, 460, 646
BspPI GGATC 1 cut(s) 596
BspT107I GGYRCC 2 cut(s) 383, 644
BspTNI GGTCTC 2 cut(s) 309, 696
BsrDI GCAATG 1 cut(s) 927
BsrFI RCCGGY 1 cut(s) 538
BsrI ACTGG 2 cut(s) 680, 1086
BssAI RCCGGY 1 cut(s) 538
BssECI CCNNGG 5 cut(s) 60, 61, 474, 622, 848
BssMI GATC 4 cut(s) 554, 601, 638, 1111
BssT1I CCWWGG 3 cut(s) 474, 622, 848
Bst2UI CCWGG 2 cut(s) 62, 1205
Bst4CI ACNGT 3 cut(s) 649, 886, 962
Bst6I CTCTTC 2 cut(s) 240, 403
BstC8I GCNNGC 1 cut(s) 758
BstDEI CTNAG 5 cut(s) 112, 505, 576, 732, 1250
BstF5I GGATG 4 cut(s) 462, 494, 817, 844
BstFNI CGCG 1 cut(s) 905
BstHHI GCGC 1 cut(s) 907
BstKTI GATC 4 cut(s) 557, 604, 641, 1114
BstMAI GTCTC 3 cut(s) 309, 696, 894
BstMBI GATC 4 cut(s) 554, 601, 638, 1111
BstMWI GCNNNNNNNGC 4 cut(s) 108, 182, 191, 902
BstNI CCWGG 2 cut(s) 62, 1205
BstSCI CCNGG 2 cut(s) 60, 1203
BstUI CGCG 1 cut(s) 905
BstV1I GCAGC 4 cut(s) 232, 600, 934, 1136
BstX2I RGATCY 2 cut(s) 554, 638
BstXI CCANNNNNNTGG 1 cut(s) 481
BstYI RGATCY 2 cut(s) 554, 638
BsuRI GGCC 2 cut(s) 48, 992
BtsCI GGATG 4 cut(s) 462, 494, 817, 844
BtsIMutI CAGTG 2 cut(s) 513, 1093
Cac8I GCNNGC 1 cut(s) 758
CfoI GCGC 1 cut(s) 907
Cfr10I RCCGGY 1 cut(s) 538
CseI GACGC 1 cut(s) 911
Csp6I GTAC 3 cut(s) 619, 645, 882
CviAII CATG 6 cut(s) 165, 311, 320, 593, 607, 1157
CviQI GTAC 3 cut(s) 619, 645, 882
DdeI CTNAG 5 cut(s) 112, 505, 576, 732, 1250
DpnI GATC 4 cut(s) 556, 603, 640, 1113
DpnII GATC 4 cut(s) 554, 601, 638, 1111
Eam1104I CTCTTC 2 cut(s) 240, 403
EarI CTCTTC 2 cut(s) 240, 403
Eco130I CCWWGG 3 cut(s) 474, 622, 848
Eco147I AGGCCT 1 cut(s) 992
Eco31I GGTCTC 2 cut(s) 309, 696
Eco57I CTGAAG 1 cut(s) 257
Eco88I CYCGRG 2 cut(s) 256, 761
EcoRII CCWGG 2 cut(s) 60, 1203
EcoT14I CCWWGG 3 cut(s) 474, 622, 848
ErhI CCWWGG 3 cut(s) 474, 622, 848
Esp3I CGTCTC 1 cut(s) 894
FaeI CATG 6 cut(s) 168, 314, 323, 596, 610, 1160
FaqI GGGAC 2 cut(s) 78, 89
FatI CATG 6 cut(s) 164, 310, 319, 592, 606, 1156
Fnu4HI GCNGC 6 cut(s) 221, 536, 589, 940, 948, 1125
FokI GGATG 4 cut(s) 449, 501, 824, 831
Fsp4HI GCNGC 6 cut(s) 221, 536, 589, 940, 948, 1125
FspBI CTAG 2 cut(s) 378, 716
GlaI GCGC 1 cut(s) 906
GluI GCNGC 6 cut(s) 221, 536, 589, 940, 948, 1125
GsaI CCCAGC 4 cut(s) 101, 527, 731, 1212
GsuI CTGGAG 2 cut(s) 682, 918
HaeIII GGCC 2 cut(s) 48, 992
HapII CCGG 1 cut(s) 539
HgaI GACGC 1 cut(s) 911
HhaI GCGC 1 cut(s) 907
Hin1II CATG 6 cut(s) 168, 314, 323, 596, 610, 1160
Hin6I GCGC 1 cut(s) 905
HinP1I GCGC 1 cut(s) 905
HinfI GANTC 5 cut(s) 77, 122, 232, 422, 1003
HpaII CCGG 1 cut(s) 539
HphI GGTGA 3 cut(s) 218, 998, 1043
Hpy166II GTNNAC 4 cut(s) 371, 502, 673, 1034
Hpy188I TCNGA 4 cut(s) 276, 775, 1008, 1253
Hpy188III TCNNGA 5 cut(s) 256, 258, 583, 763, 1177
Hpy8I GTNNAC 4 cut(s) 371, 502, 673, 1034
HpyAV CCTTC 4 cut(s) 175, 760, 1022, 1219
HpyCH4III ACNGT 3 cut(s) 649, 886, 962
HpyCH4IV ACGT 2 cut(s) 18, 278
HpyCH4V TGCA 9 cut(s) 4, 155, 365, 445, 515, 616, 932, 950, 1124
HpyF10VI GCNNNNNNNGC 4 cut(s) 108, 182, 191, 902
HpyF3I CTNAG 5 cut(s) 112, 505, 576, 732, 1250
HpySE526I ACGT 2 cut(s) 18, 278
Hsp92II CATG 6 cut(s) 168, 314, 323, 596, 610, 1160
HspAI GCGC 1 cut(s) 905
KpnI GGTACC 1 cut(s) 648
Kzo9I GATC 4 cut(s) 554, 601, 638, 1111
LmnI GCTCC 4 cut(s) 32, 108, 853, 912
Lsp1109I GCAGC 4 cut(s) 232, 600, 934, 1136
LweI GCATC 4 cut(s) 181, 454, 802, 853
MaeI CTAG 2 cut(s) 378, 716
MaeII ACGT 2 cut(s) 18, 278
MalI GATC 4 cut(s) 556, 603, 640, 1113
MboI GATC 4 cut(s) 554, 601, 638, 1111
MboII GAAGA 7 cut(s) 227, 390, 564, 673, 731, 1012, 1234
MflI RGATCY 2 cut(s) 554, 638
MluCI AATT 4 cut(s) 39, 261, 805, 1017
MlyI GAGTC 2 cut(s) 71, 226
MmeI TCCRAC 2 cut(s) 333, 466
MroXI GAANNNNTTC 1 cut(s) 126
MseI TTAA 5 cut(s) 294, 435, 611, 752, 1261
MslI CAYNNNNRTG 1 cut(s) 611
MspI CCGG 1 cut(s) 539
MspR9I CCNGG 2 cut(s) 62, 1205
MvaI CCWGG 2 cut(s) 62, 1205
MvnI CGCG 1 cut(s) 905
MwoI GCNNNNNNNGC 4 cut(s) 108, 182, 191, 902
NdeII GATC 4 cut(s) 554, 601, 638, 1111
NlaIII CATG 6 cut(s) 168, 314, 323, 596, 610, 1160
NlaIV GGNNCC 3 cut(s) 385, 460, 646
PaeR7I CTCGAG 1 cut(s) 256
PasI CCCWGGG 1 cut(s) 61
PceI AGGCCT 1 cut(s) 992
PdmI GAANNNNTTC 1 cut(s) 126
PfeI GAWTC 3 cut(s) 122, 422, 1003
PkrI GCNGC 6 cut(s) 222, 537, 590, 941, 949, 1126
PleI GAGTC 2 cut(s) 71, 226
PpsI GAGTC 2 cut(s) 71, 226
Psp6I CCWGG 2 cut(s) 60, 1203
PspFI CCCAGC 4 cut(s) 97, 523, 727, 1208
PspGI CCWGG 2 cut(s) 60, 1203
PspN4I GGNNCC 3 cut(s) 385, 460, 646
PsuI RGATCY 2 cut(s) 554, 638
RsaI GTAC 3 cut(s) 620, 646, 883
RsaNI GTAC 3 cut(s) 619, 645, 882
RseI CAYNNNNRTG 1 cut(s) 611
SaqAI TTAA 5 cut(s) 294, 435, 611, 752, 1261
SatI GCNGC 6 cut(s) 221, 536, 589, 940, 948, 1125
Sau3AI GATC 4 cut(s) 554, 601, 638, 1111
SchI GAGTC 2 cut(s) 71, 226
ScrFI CCNGG 2 cut(s) 62, 1205
SfaNI GCATC 4 cut(s) 181, 454, 802, 853
Sfr274I CTCGAG 1 cut(s) 256
SlaI CTCGAG 1 cut(s) 256
SmiMI CAYNNNNRTG 1 cut(s) 611
SmlI CTYRAG 4 cut(s) 136, 256, 832, 1177
SmoI CTYRAG 4 cut(s) 136, 256, 832, 1177
Sse9I AATT 4 cut(s) 39, 261, 805, 1017
SseBI AGGCCT 1 cut(s) 992
SsiI CCGC 4 cut(s) 57, 536, 794, 939
SspI AATATT 1 cut(s) 871
SspMI CTAG 2 cut(s) 378, 716
StuI AGGCCT 1 cut(s) 992
StyD4I CCNGG 2 cut(s) 60, 1203
StyI CCWWGG 3 cut(s) 474, 622, 848
TaaI ACNGT 3 cut(s) 649, 886, 962
TaiI ACGT 2 cut(s) 21, 281
TaqI TCGA 2 cut(s) 257, 565
TasI AATT 4 cut(s) 39, 261, 805, 1017
TauI GCSGC 2 cut(s) 538, 942
TfiI GAWTC 3 cut(s) 122, 422, 1003
Tru1I TTAA 5 cut(s) 294, 435, 611, 752, 1261
Tru9I TTAA 5 cut(s) 294, 435, 611, 752, 1261
TscAI CASTG 2 cut(s) 513, 1093
TseI GCWGC 4 cut(s) 220, 588, 947, 1124
TspDTI ATGAA 4 cut(s) 119, 336, 792, 1041
TspGWI ACGGA 1 cut(s) 471
TspRI CASTG 2 cut(s) 513, 1093
XapI RAATTY 2 cut(s) 39, 261
XhoI CTCGAG 1 cut(s) 256
XmnI GAANNNNTTC 1 cut(s) 126
XspI CTAG 2 cut(s) 378, 716
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.