AT5G48090

PHD zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000343
Physical Location & Seq
Forward (+)
19484015 .. 19488657
4643 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G48090.2

Sequence Viewer

Length: 2034 bp
ATGAAAAGAGATGAAGATTTGACAAAATCAAAGTTTTTGATTACGTTTCTGGGGAAGACATCACAAACAACACCTATCGAAGTGGAACTTCCAACAGACCATCTACAAGATGCTCAGACACCAATGGAACAGGACTCCATTGTTGAGAATATGACAGATGAGGAAAACAGCAGCAGTAGCGATGATGATTCTGAGGCGAACCTGCAGTTTGATCCAGTATGTTCTATTTGTGACAATGGTGGTTATGTTCTGTGTTGTGAAGGAAGTTGCTTGAGATCTTTCCATCCAACCATAGCTGATGGAATTGAGACAGAGTGCGAATCGCTAGGATTCACTGATAAGACTCAAATTCAGGCACTCGGGACCTATTTGTGTAACAATTGTCTCTATAAACAGCACCAGTGCTATGCTTGTGGCGAATTGGGATCCTCTGATGAAAATTTCTCTCAACAGGTCTTCCCTTGCTCTGCGTCAAACTGTGGTCATTTCTACCATCCTGAATGCGTTGCAAGACTTCTCTGTGCTGATGATCAAAACAAAGCAGAAGAACTTCAAGCCAAGATTGCTGCTAGAGACTGCTTTGCCTGTCCTCTACACACATGTAAACTCTGTAACATGAGTGAAGACAAGAATCAATATGCGTGCATTTTGCTGTATGCAGACGTTGCCCAACAGCTTATCACAGAAAATGTTTACCTAGGGATATTACTTCTGAACTCAACTCTGACGATGAGACATTGCAAAGAGCTTGGGAAAGTCTGCTTCCTTACAACCGCATTCTTATATATTGTTTCTTTTCATAAACTTTTGAACAGGGCCCATGAGATAGACGGTCTTATTCTTACTCCAGCTAGAGACCACTTAGTTTTTCCTGATGTATCTGGACAAAGAAGAACACGAAGTCACGGGCTAGCACAGTTCAAAGAGGATGTTCTGGGTATGGAGACGGATCATTGTCATCATGAGGGTCTATTTACTGGTCTTGGTATTACTGACCCTTATGAGAAACCAAAAAAAGATATTAGCTGCGATGAGGTGGAACAGAGGGTGATGGGTATAATCGATGAAGTGGAATCCTCGTTTAACTTTGATGAGTTCGTTAAGTCTCGTAGGCCAACCCATATAAAATCCTACCACTCAGGAAACTATTTTAGTAAGAACATCACAACAGGATTGGTTCGGACTCATGTCAATGCTGCTCGAGCTGCCTTAAAGATGTTTGAAGAAGGGCGTGACAGAGATGCAAGAGCTTTATTTGACCCAGATAGCCTACTCCAACTCATGAAGCATAAGAAAAAGCTTGAAATTTCGCCTTTTCTCCATGGTATGCGCTACACATCGTTTGGTCGTCACTTCACAAATCCAGAGAAGCTTAAAGAGATTGTAGAGAGGCTCCACTGGTATGTCGAAAATGGCGATACGGTAGTCGACTTTTGCTGCGGCTCTAATGACTTCAGTTGTTTGATGAAAGAAAAGCTTATGGAAACGGGGAAAATATGCTTCTACAAAAACTTAGATCTCATCCCACCTAAGAACAACTTCAATTTTGAGATGAGAGATTGGCTGAGTGTGAAGGAAGAAGAGTTACCCGATGGCTCTCAACTGATTATGGGATTGAACCCGCCTTTTGGTTACAAAGCCAGTCTTGCTAACACTTTCATTAAGAAGGCCCTCGAGTTTAAACCGAAGATCTTAATCCTCATCGTACCAAGTGAAACAAAAAGGGTCGATGCGATTGATGATTATGAGTTGATTTGGGAGGACAGAAATTTACTTGCTGGAATGTCGTTCTACTTGCCTGGGTCAGTAGATGTGAATGATAAAACGATAGAGCAGTGGAACAATATAACGCCACCTCTATACCTTTGGAGCCGAAGGGATTTGAGTAGAAGCCACAAGACCACAGCAGTTCAACAGGGTCACATAACACAGATGCATCACTTCACCTACAATGGCGATAGTCACCACACAGAGATCCCTCAAGGTGATGATGATACTGATATGGTACAAGACATGGAGATATCCCCTACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNMT1-RFD

Protein Analysis

677

Amino Acids

77.03

Weight (kDa)

5.2

Isoelectric Point (pI)

47.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD_NSD PF22908 90 - 158 2.9e-16 Histone-lysine N-methyltransferase NSD-like, PHD zinc finger
Mtase_EDM2 PF26055 427 - 595 1.9e-84 EDM2 methyltransferase-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000343)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48090 AT5G48090 AT5G48090 AT5G55390 AT5G55390 AT5G55390
fragaria_vesca FvH4_3g23690 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160
malus_domestica MD03G1191000.v1.1 MD11G1207800.v1.1 MD11G1208000.v1.1
prunus_persica Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227600_v2.0.a1 Prupe.4G227700_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1
pyrus_communis pycom01g03400 pycom03g14420 pycom11g18100 pycom11g18140 pycom11g18150 pycom11g18160
rosa_chinensis RchiOBHm_Chr2g0145981 RchiOBHm_Chr4g0405241 RchiOBHm_Chr4g0405271 RchiOBHm_Chr5g0016201 RchiOBHm_Chr5g0041831 RchiOBHm_Chr5g0041871 RchiOBHm_Chr5g0041881 RchiOBHm_Chr5g0059241
rosa_laevigata RLG00000002117 RLG00000008861 RLG00000008862 RLG00000011000 RLG00000033216 RLG00000034097 RLG00000034101
rosa_multiflora Rmu_sc0000161.1_g000001 Rmu_sc0000861.1_g000040 Rmu_sc0007522.1_g000003 Rmu_sc0009443.1_g000015 Rmu_sc0022129.1_g000001 Rmu_sc0042315.1_g000001
rosa_roxburghii Rroxscaffold_1G00038660 Rroxscaffold_1G00038690 Rroxscaffold_5G00349560 Rroxscaffold_5G00349610 Rroxscaffold_6G00388370 Rroxscaffold_7G00188740
rosa_rugosa Rorug03G0199700 Rorug04G0055400 Rorug04G0055500 Rorug04G0055900 Rorug04G0056000 Rorug04G0056100 Rorug04G0056100 Rorug04G0056200 Rorug05G0195600 Rorug05G0195700 Rorug05G0195800 Rorug05G0195900 Rorug05G0196800 Rorug05G0385000
rosa_samantha Rh4AG129900 Rh4AG130100 Rh4BG124200 Rh4BG124400 Rh4BG124500 Rh4CG137200 Rh4CG137300 Rh4DG123500 Rh4DG123700 Rh5AG280800 Rh5AG281400 Rh5BG286700 Rh5BG287000 Rh5BG397800 Rh5CG318100 Rh5CG318600 Rh5CG421600 Rh5DG132300 Rh5DG132400 Rh5DG295400 Rh5DG295700 Rh7BG475300
rosa_wichuraiana Rw0G001330 Rw0G005730 Rw4G008670 Rw4G010510 Rw4G010540 Rw5G026450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 210
AccI GTMKAC 1 cut(s) 1428
AciI CCGC 3 cut(s) 774, 1440, 1622
AclWI GGATC 5 cut(s) 206, 420, 433, 957, 1969
AcsI RAATTY 4 cut(s) 348, 439, 1305, 1768
AcuI CTGAAG 1 cut(s) 1438
AfaI GTAC 2 cut(s) 1707, 2007
AfiI CCNNNNNNNGG 1 cut(s) 1628
AflIII ACRYGT 1 cut(s) 599
AgsI TTSAA 8 cut(s) 554, 811, 922, 1223, 1304, 1543, 1618, 1913
AjnI CCWGG 1 cut(s) 1798
Alw26I GTCTC 7 cut(s) 302, 389, 567, 727, 849, 938, 1110
AlwI GGATC 5 cut(s) 206, 420, 433, 957, 1969
Ama87I CYCGRG 3 cut(s) 359, 1200, 1673
AoxI GGCC 3 cut(s) 816, 1112, 1668
ApaI GGGCCC 1 cut(s) 820
ApeKI GCWGC 6 cut(s) 171, 566, 1026, 1196, 1205, 1437
ApoI RAATTY 4 cut(s) 348, 439, 1305, 1768
Asp700I GAANNNNTTC 2 cut(s) 549, 1538
AspA2I CCTAGG 1 cut(s) 697
AspLEI GCGC 1 cut(s) 1332
AspS9I GGNCC 4 cut(s) 363, 816, 817, 1669
AsuHPI GGTGA 4 cut(s) 1060, 1936, 1955, 1997
AsuNHI GCTAGC 1 cut(s) 910
AvaI CYCGRG 3 cut(s) 359, 1200, 1673
AvaII GGWCC 1 cut(s) 363
AvrII CCTAGG 1 cut(s) 697
BaeGI GKGCMC 1 cut(s) 820
BaeI ACNNNNGTAYC 2 cut(s) 1410, 1443
BamHI GGATCC 1 cut(s) 425
BanII GRGCYC 1 cut(s) 820
BarI GAAGNNNNNNTAC 2 cut(s) 1569, 1601
BbsI GAAGAC 3 cut(s) 62, 448, 630
BbvI GCAGC 6 cut(s) 183, 553, 1013, 1183, 1192, 1424
BccI CCATC 6 cut(s) 108, 291, 293, 501, 1045, 1586
BciT130I CCWGG 1 cut(s) 1800
BclI TGATCA 1 cut(s) 529
BcoDI GTCTC 7 cut(s) 302, 389, 567, 727, 849, 938, 1110
BfaI CTAG 5 cut(s) 326, 570, 698, 852, 911
BfmI CTRYAG 1 cut(s) 203
BfuAI ACCTGC 1 cut(s) 210
BglII AGATCT 3 cut(s) 275, 1516, 1689
BisI GCNGC 7 cut(s) 172, 567, 1027, 1197, 1206, 1438, 1441
BlnI CCTAGG 1 cut(s) 697
BlsI GCNGC 7 cut(s) 173, 568, 1028, 1198, 1207, 1439, 1442
Bme1390I CCNGG 1 cut(s) 1800
Bme18I GGWCC 1 cut(s) 363
BmeT110I CYCGRG 3 cut(s) 359, 1200, 1673
BmgT120I GGNCC 4 cut(s) 363, 816, 817, 1669
BmiI GGNNCC 5 cut(s) 364, 427, 818, 1394, 1871
BmrFI CCNGG 1 cut(s) 1800
BmsI GCATC 5 cut(s) 100, 1231, 1720, 1923, 1945
BmtI GCTAGC 1 cut(s) 914
BoxI GACNNNNGTC 1 cut(s) 1187
BpiI GAAGAC 3 cut(s) 62, 448, 630
BpmI CTGGAG 1 cut(s) 831
BpuEI CTTGAG 2 cut(s) 292, 1965
Bsa29I ATCGAT 1 cut(s) 1062
BsaBI GATNNNNATC 1 cut(s) 1694
BsaI GGTCTC 1 cut(s) 849
BsaJI CCNNGG 3 cut(s) 697, 1321, 1799
Bsc4I CCNNNNNNNGG 1 cut(s) 1628
Bse1I ACTGG 5 cut(s) 215, 400, 982, 1403, 1641
Bse3DI GCAATG 1 cut(s) 736
Bse8I GATNNNNATC 1 cut(s) 1694
BseBI CCWGG 1 cut(s) 1800
BseCI ATCGAT 1 cut(s) 1062
BseDI CCNNGG 3 cut(s) 697, 1321, 1799
BseGI GGATG 4 cut(s) 283, 493, 934, 1521
BseJI GATNNNNATC 1 cut(s) 1694
BseLI CCNNNNNNNGG 1 cut(s) 1628
BseMI GCAATG 1 cut(s) 736
BseMII CTCAG 4 cut(s) 128, 183, 1152, 1556
BseNI ACTGG 5 cut(s) 215, 400, 982, 1403, 1641
BseSI GKGCMC 1 cut(s) 820
BseXI GCAGC 6 cut(s) 183, 553, 1013, 1183, 1192, 1424
BshFI GGCC 3 cut(s) 818, 1114, 1670
BshVI ATCGAT 1 cut(s) 1062
BsiHKCI CYCGRG 3 cut(s) 359, 1200, 1673
BslFI GGGAC 1 cut(s) 376
BslI CCNNNNNNNGG 1 cut(s) 1628
BsmAI GTCTC 7 cut(s) 302, 389, 567, 727, 849, 938, 1110
BsmBI CGTCTC 1 cut(s) 938
BsmFI GGGAC 1 cut(s) 376
BsmI GAATGC 2 cut(s) 506, 776
BsnI GGCC 3 cut(s) 818, 1114, 1670
Bso31I GGTCTC 1 cut(s) 849
BsoBI CYCGRG 3 cut(s) 359, 1200, 1673
Bsp120I GGGCCC 1 cut(s) 816
Bsp1286I GDGCHC 1 cut(s) 820
Bsp143I GATC 8 cut(s) 211, 275, 425, 529, 949, 1516, 1689, 1974
Bsp19I CCATGG 1 cut(s) 1321
BspACI CCGC 3 cut(s) 774, 1440, 1622
BspANI GGCC 3 cut(s) 818, 1114, 1670
BspCNI CTCAG 4 cut(s) 127, 184, 1151, 1557
BspDI ATCGAT 1 cut(s) 1062
BspHI TCATGA 2 cut(s) 961, 1281
BspLI GGNNCC 5 cut(s) 364, 427, 818, 1394, 1871
BspMAI CTGCAG 1 cut(s) 207
BspMI ACCTGC 1 cut(s) 210
BspOI GCTAGC 1 cut(s) 914
BspPI GGATC 5 cut(s) 206, 420, 433, 957, 1969
BspTNI GGTCTC 1 cut(s) 849
BsrDI GCAATG 1 cut(s) 736
BsrI ACTGG 5 cut(s) 215, 400, 982, 1403, 1641
BssECI CCNNGG 3 cut(s) 697, 1321, 1799
BssMI GATC 8 cut(s) 211, 275, 425, 529, 949, 1516, 1689, 1974
BssT1I CCWWGG 2 cut(s) 697, 1321
Bst2UI CCWGG 1 cut(s) 1800
Bst4CI ACNGT 4 cut(s) 479, 833, 918, 1423
Bst6I CTCTTC 1 cut(s) 1575
BstAPI GCANNNNNTGC 1 cut(s) 665
BstC8I GCNNGC 2 cut(s) 643, 912
BstDEI CTNAG 7 cut(s) 114, 192, 862, 1138, 1513, 1530, 1565
BstDSI CCRYGG 1 cut(s) 1321
BstF5I GGATG 4 cut(s) 283, 493, 934, 1521
BstHHI GCGC 1 cut(s) 1332
BstKTI GATC 8 cut(s) 214, 278, 428, 532, 952, 1519, 1692, 1977
BstMAI GTCTC 7 cut(s) 302, 389, 567, 727, 849, 938, 1110
BstMBI GATC 8 cut(s) 211, 275, 425, 529, 949, 1516, 1689, 1974
BstMWI GCNNNNNNNGC 6 cut(s) 177, 563, 665, 1202, 1205, 1646
BstNI CCWGG 1 cut(s) 1800
BstNSI RCATGY 1 cut(s) 603
BstPAI GACNNNNGTC 1 cut(s) 1187
BstSCI CCNGG 1 cut(s) 1798
BstSFI CTRYAG 1 cut(s) 203
BstSLI GKGCMC 1 cut(s) 820
BstV1I GCAGC 6 cut(s) 183, 553, 1013, 1183, 1192, 1424
BstV2I GAAGAC 3 cut(s) 62, 448, 630
BstX2I RGATCY 5 cut(s) 275, 425, 1516, 1689, 1974
BstYI RGATCY 5 cut(s) 275, 425, 1516, 1689, 1974
Bsu15I ATCGAT 1 cut(s) 1062
BsuRI GGCC 3 cut(s) 818, 1114, 1670
BsuTUI ATCGAT 1 cut(s) 1062
BtgI CCRYGG 1 cut(s) 1321
BtgZI GCGATG 2 cut(s) 195, 1044
BtsCI GGATG 4 cut(s) 283, 493, 934, 1521
BtsI GCAGTG 1 cut(s) 1841
BtsIMutI CAGTG 4 cut(s) 333, 407, 1396, 1841
BveI ACCTGC 1 cut(s) 210
Cac8I GCNNGC 2 cut(s) 643, 912
CciI TCATGA 2 cut(s) 961, 1281
CfoI GCGC 1 cut(s) 1332
Cfr13I GGNCC 4 cut(s) 363, 816, 817, 1669
ClaI ATCGAT 1 cut(s) 1062
CseI GACGC 1 cut(s) 459
Csp6I GTAC 2 cut(s) 1706, 2006
CviAII CATG 8 cut(s) 600, 616, 821, 962, 1187, 1282, 1322, 2014
CviQI GTAC 2 cut(s) 1706, 2006
DdeI CTNAG 7 cut(s) 114, 192, 862, 1138, 1513, 1530, 1565
DpnI GATC 8 cut(s) 213, 277, 427, 531, 951, 1518, 1691, 1976
DpnII GATC 8 cut(s) 211, 275, 425, 529, 949, 1516, 1689, 1974
DraI TTTAAA 1 cut(s) 1681
Eam1104I CTCTTC 1 cut(s) 1575
EarI CTCTTC 1 cut(s) 1575
Eco130I CCWWGG 2 cut(s) 697, 1321
Eco24I GRGCYC 1 cut(s) 820
Eco31I GGTCTC 1 cut(s) 849
Eco32I GATATC 1 cut(s) 2022
Eco47I GGWCC 1 cut(s) 363
Eco57I CTGAAG 1 cut(s) 1438
Eco88I CYCGRG 3 cut(s) 359, 1200, 1673
EcoO109I RGGNCCY 3 cut(s) 363, 816, 1669
EcoRII CCWGG 1 cut(s) 1798
EcoRV GATATC 1 cut(s) 2022
EcoT14I CCWWGG 2 cut(s) 697, 1321
EcoT22I ATGCAT 1 cut(s) 1938
EcoT38I GRGCYC 1 cut(s) 820
ErhI CCWWGG 2 cut(s) 697, 1321
Esp3I CGTCTC 1 cut(s) 938
FaeI CATG 8 cut(s) 603, 619, 824, 965, 1190, 1285, 1325, 2017
FalI AAGNNNNNCTT 8 cut(s) 72, 104, 1461, 1493, 1523, 1555, 1629, 1661
FaqI GGGAC 1 cut(s) 376
FatI CATG 8 cut(s) 599, 615, 820, 961, 1186, 1281, 1321, 2013
FauI CCCGC 1 cut(s) 1629
FbaI TGATCA 1 cut(s) 529
FblI GTMKAC 1 cut(s) 1428
Fnu4HI GCNGC 7 cut(s) 172, 567, 1027, 1197, 1206, 1438, 1441
FokI GGATG 4 cut(s) 270, 480, 941, 1508
FriOI GRGCYC 1 cut(s) 820
Fsp4HI GCNGC 7 cut(s) 172, 567, 1027, 1197, 1206, 1438, 1441
FspBI CTAG 5 cut(s) 326, 570, 698, 852, 911
GlaI GCGC 1 cut(s) 1331
GluI GCNGC 7 cut(s) 172, 567, 1027, 1197, 1206, 1438, 1441
GsuI CTGGAG 1 cut(s) 831
HaeIII GGCC 3 cut(s) 818, 1114, 1670
HgaI GACGC 1 cut(s) 459
HhaI GCGC 1 cut(s) 1332
Hin1II CATG 8 cut(s) 603, 619, 824, 965, 1190, 1285, 1325, 2017
Hin6I GCGC 1 cut(s) 1330
HinP1I GCGC 1 cut(s) 1330
HincII GTYRAC 1 cut(s) 1429
HindII GTYRAC 1 cut(s) 1429
HindIII AAGCTT 3 cut(s) 1298, 1370, 1475
HinfI GANTC 8 cut(s) 134, 188, 320, 330, 343, 631, 1073, 1183
HphI GGTGA 4 cut(s) 1060, 1936, 1955, 1997
Hpy166II GTNNAC 3 cut(s) 605, 694, 1429
Hpy188I TCNGA 6 cut(s) 117, 193, 433, 714, 726, 1182
Hpy188III TCNNGA 8 cut(s) 361, 497, 872, 882, 962, 1140, 1282, 1364
Hpy8I GTNNAC 3 cut(s) 605, 694, 1429
HpyAV CCTTC 5 cut(s) 254, 1220, 1567, 1660, 1869
HpyCH4III ACNGT 4 cut(s) 479, 833, 918, 1423
HpyCH4IV ACGT 2 cut(s) 44, 663
HpyCH4V TGCA 7 cut(s) 205, 509, 645, 659, 741, 1244, 1936
HpyF10VI GCNNNNNNNGC 6 cut(s) 177, 563, 665, 1202, 1205, 1646
HpyF3I CTNAG 7 cut(s) 114, 192, 862, 1138, 1513, 1530, 1565
HpySE526I ACGT 2 cut(s) 44, 663
Hsp92II CATG 8 cut(s) 603, 619, 824, 965, 1190, 1285, 1325, 2017
HspAI GCGC 1 cut(s) 1330
Ksp22I TGATCA 1 cut(s) 529
Kzo9I GATC 8 cut(s) 211, 275, 425, 529, 949, 1516, 1689, 1974
LmnI GCTCC 2 cut(s) 1398, 1869
Lsp1109I GCAGC 6 cut(s) 183, 553, 1013, 1183, 1192, 1424
LweI GCATC 5 cut(s) 100, 1231, 1720, 1923, 1945
MaeI CTAG 5 cut(s) 326, 570, 698, 852, 911
MaeII ACGT 2 cut(s) 44, 663
MalI GATC 8 cut(s) 213, 277, 427, 531, 951, 1518, 1691, 1976
MboI GATC 8 cut(s) 211, 275, 425, 529, 949, 1516, 1689, 1974
MfeI CAATTG 1 cut(s) 379
MflI RGATCY 5 cut(s) 275, 425, 1516, 1689, 1974
MhlI GDGCHC 1 cut(s) 820
MluCI AATT 8 cut(s) 303, 348, 379, 419, 439, 1305, 1543, 1768
MlyI GAGTC 3 cut(s) 128, 337, 1177
MmeI TCCRAC 3 cut(s) 116, 311, 1300
Mph1103I ATGCAT 1 cut(s) 1938
MroXI GAANNNNTTC 2 cut(s) 549, 1538
MseI TTAA 7 cut(s) 1083, 1101, 1211, 1374, 1662, 1680, 1694
MslI CAYNNNNRTG 2 cut(s) 1191, 1401
MspR9I CCNGG 1 cut(s) 1800
MssI GTTTAAAC 1 cut(s) 1681
MunI CAATTG 1 cut(s) 379
Mva1269I GAATGC 2 cut(s) 506, 776
MvaI CCWGG 1 cut(s) 1800
MwoI GCNNNNNNNGC 6 cut(s) 177, 563, 665, 1202, 1205, 1646
NcoI CCATGG 1 cut(s) 1321
NdeII GATC 8 cut(s) 211, 275, 425, 529, 949, 1516, 1689, 1974
NheI GCTAGC 1 cut(s) 910
NlaIII CATG 8 cut(s) 603, 619, 824, 965, 1190, 1285, 1325, 2017
NlaIV GGNNCC 5 cut(s) 364, 427, 818, 1394, 1871
NmuCI GTSAC 6 cut(s) 230, 902, 1232, 1349, 1919, 1961
NsiI ATGCAT 1 cut(s) 1938
NspI RCATGY 1 cut(s) 603
PaeR7I CTCGAG 2 cut(s) 1200, 1673
PagI TCATGA 2 cut(s) 961, 1281
PciI ACATGT 1 cut(s) 599
PcsI WCGNNNNNNNCGW 1 cut(s) 1413
PctI GAATGC 2 cut(s) 506, 776
PdmI GAANNNNTTC 2 cut(s) 549, 1538
PfeI GAWTC 5 cut(s) 188, 320, 330, 631, 1073
PkrI GCNGC 7 cut(s) 173, 568, 1028, 1198, 1207, 1439, 1442
PleI GAGTC 3 cut(s) 128, 337, 1177
PmeI GTTTAAAC 1 cut(s) 1681
PpsI GAGTC 3 cut(s) 128, 337, 1177
PpuMI RGGWCCY 1 cut(s) 363
PscI ACATGT 1 cut(s) 599
PshAI GACNNNNGTC 1 cut(s) 1187
Psp5II RGGWCCY 1 cut(s) 363
Psp6I CCWGG 1 cut(s) 1798
PspGI CCWGG 1 cut(s) 1798
PspN4I GGNNCC 5 cut(s) 364, 427, 818, 1394, 1871
PspOMI GGGCCC 1 cut(s) 816
PspPI GGNCC 4 cut(s) 363, 816, 817, 1669
PspPPI RGGWCCY 1 cut(s) 363
PspXI VCTCGAGB 2 cut(s) 1200, 1673
PstI CTGCAG 1 cut(s) 207
PsuI RGATCY 5 cut(s) 275, 425, 1516, 1689, 1974
RsaI GTAC 2 cut(s) 1707, 2007
RsaNI GTAC 2 cut(s) 1706, 2006
RseI CAYNNNNRTG 2 cut(s) 1191, 1401
SalI GTCGAC 1 cut(s) 1427
SaqAI TTAA 7 cut(s) 1083, 1101, 1211, 1374, 1662, 1680, 1694
SatI GCNGC 7 cut(s) 172, 567, 1027, 1197, 1206, 1438, 1441
Sau3AI GATC 8 cut(s) 211, 275, 425, 529, 949, 1516, 1689, 1974
Sau96I GGNCC 4 cut(s) 363, 816, 817, 1669
SchI GAGTC 3 cut(s) 128, 337, 1177
ScrFI CCNGG 1 cut(s) 1800
SduI GDGCHC 1 cut(s) 820
SfaNI GCATC 5 cut(s) 100, 1231, 1720, 1923, 1945
SfcI CTRYAG 1 cut(s) 203
Sfr274I CTCGAG 2 cut(s) 1200, 1673
SinI GGWCC 1 cut(s) 363
SlaI CTCGAG 2 cut(s) 1200, 1673
SmiMI CAYNNNNRTG 2 cut(s) 1191, 1401
SmlI CTYRAG 4 cut(s) 271, 1200, 1673, 1980
SmoI CTYRAG 4 cut(s) 271, 1200, 1673, 1980
Sse9I AATT 8 cut(s) 303, 348, 379, 419, 439, 1305, 1543, 1768
SsiI CCGC 3 cut(s) 774, 1440, 1622
SspMI CTAG 5 cut(s) 326, 570, 698, 852, 911
StyD4I CCNGG 1 cut(s) 1798
StyI CCWWGG 2 cut(s) 697, 1321
TaaI ACNGT 4 cut(s) 479, 833, 918, 1423
TaiI ACGT 2 cut(s) 47, 666
TaqI TCGA 7 cut(s) 78, 1062, 1201, 1407, 1428, 1674, 1728
TasI AATT 8 cut(s) 303, 348, 379, 419, 439, 1305, 1543, 1768
TauI GCSGC 1 cut(s) 1443
TfiI GAWTC 5 cut(s) 188, 320, 330, 631, 1073
Tru1I TTAA 7 cut(s) 1083, 1101, 1211, 1374, 1662, 1680, 1694
Tru9I TTAA 7 cut(s) 1083, 1101, 1211, 1374, 1662, 1680, 1694
TscAI CASTG 4 cut(s) 340, 407, 1403, 1841
TseFI GTSAC 6 cut(s) 230, 902, 1232, 1349, 1919, 1961
TseI GCWGC 6 cut(s) 171, 566, 1026, 1196, 1205, 1437
Tsp45I GTSAC 6 cut(s) 230, 902, 1232, 1349, 1919, 1961
TspDTI ATGAA 8 cut(s) 17, 27, 450, 788, 1080, 1298, 1481, 1648
TspGWI ACGGA 1 cut(s) 962
TspRI CASTG 4 cut(s) 340, 407, 1403, 1841
VpaK11BI GGWCC 1 cut(s) 363
XapI RAATTY 4 cut(s) 348, 439, 1305, 1768
XceI RCATGY 1 cut(s) 603
XhoI CTCGAG 2 cut(s) 1200, 1673
XmaJI CCTAGG 1 cut(s) 697
XmiI GTMKAC 1 cut(s) 1428
XmnI GAANNNNTTC 2 cut(s) 549, 1538
XspI CTAG 5 cut(s) 326, 570, 698, 852, 911
Zsp2I ATGCAT 1 cut(s) 1938
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.