MD11G1207800.v1.1

metal ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0000343
Physical Location & Seq
Forward (+)
30252981 .. 30262052
9072 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1207800.v1.1.491

Sequence Viewer

Length: 1875 bp
ATGTCTCAGGACATTCAATATGCCAAAATGCTCGGATTTATGGATGAGGATATGATTAGTGACGCAGAAGATGACTCAGTGGACATTGATGGCATATTTGGCTATGTCTGTTGTATATGCGATGATGGTGGCGACCTCTTGTGCTGTGAAGGGAGGTGCCTTAGGTCCTTTCATGCGACTGTAGAGGCTGGAGTGGGATCTGGTTGCAGATCTCTCGGCTTTATGCGGGGTGCTGTCGATGTGATGTCAACTTTCCTATGCAGGAACTGTAAATTTAAACAACATCAGTGCTATGCTTGTGGGGAGTTAGGGTCCTCTGATAAATCTTTGGATGCCAAGGTTTTTCCCTGTGCTTCCGCGATTTGTGGTCGTTTTTACCATCCTCGATGTGTTGCAAAGTTACTTTGTCAAAATAATAGAGAATCTGCTGAAGAACTTGAAGAAAAGATTTCTCTGGGGGATTATTTTACGTGTCCAGTTCACAAGTGCAGCGTTTGTCAAGAAGGGGAGAATAAGAAGGTCCATGAATTGCAGTTGGCTGTGTGCATGCGTTGCCCTCAATCGTACCATAGGAAATGCTTGCCAAGGGAGATTGCTTTTGAGGAGAAGGGAGGAAAATTTGGAGAAGGGAGATCAATACAAAGAGCCTGGGATGATCTACTTCCAAACCGCATACTAATATATTGCACGAAGCATGCGATAAACAGCTACACCAGATCTGCAACAAGGGACCACATAAAATTTCCCGAATTTGAAGAGAGGAAGAGAAAACAGGCATTAGAGGAGCTTGTAGCTAGAAGGAAAGCTCCATCTAAATCGAGAAATGATTCCTATGAAGAGTTGTGTAGGGGGAGAACTGTTCCCACGGTATCCAAACCGAAGCAAAAACCAGTATCTAAACAGGAGCAAAGGCCATCTTTTTCTGTGAATCATGAGAATCCAGATGTACTTAGTGTTGATTCAGAGAGGAGAGTATTGGATCTAATGGAAAAAGCTGCATCTTCATTAACTCTGGAAGATGTTATACTTAAGCACCCAATTCCAACAACTCATGCGTACTCATCAAAGTTTTTTGTGAACAAGAAGATGTTATTAGGAAAGGTGGAAGGCTCGACTGAGGCTGTTCGAACAGCCTTACAAAAACTAGAGAACGGGTGCAGCACTGAAGATGCAGAAGCTGTCTGTGAGCGTGATGTTCTTAACCAGATTTTTATGTGGAAGAAGAAGCTGCATGTTTATCTTGCTCCATTTCTTAATGCCACACGCTACACATCCTTTGGCCGCCATTTTACCAAGGTGGAGAAACTGGAACAGATTGTCGATAGGCTCCATTGGTATGTTCAGCCTGGAGATATGATAGTGGACTTCAGTTGTGGTTCCAATGACTTCAGTATCCTAATGAGCAAAAAGCTTGAACAGACAGGGAAGAACTGCTTGTATAAAAACTATGACTTGTTTCAGCCAGAGAACGATTTTAATTTTGAGAAGAAGGATTGGATGACTGTCAAAAGAGAGGAGTTACAGAAAGGGGGGCCATTGATCATTGGACTGAACCCTCCTTTTGGAGTCAAAGCAGCTTTGGCTAACAAGTTCATTGACAAGGCTCTTGAATTTGAGCCAAAGCTCCTCATTCTTATTGTTCCACCAGAAACACAAAGGTTGGATAGAAAGAAATCACCCTATGAGCTGATTTGGGAGGATGATCGATTATTATCTGGAAAGTCATTTTATCTTCCTGGATCGGTTGACGTGGATAACAAACAAATCGATCAGTGGAATTTGATATCGCCGCCGCTTTATCTTTGGAGTTGTCGTGATCGAGCTGCTGAGCACAAGGCCATAGCTCAAAAGCACGGCCACTCCTTTGGAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006950 GO:0006952 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009791 GO:0009889 GO:0009893 GO:0009909 GO:0009911 GO:0009987 GO:0010228 GO:0010468 GO:0010556 GO:0010604 GO:0010638 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030154 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031326 GO:0031399 GO:0031401 GO:0031440 GO:0031935 GO:0031937 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0033043 GO:0033044 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043954 GO:0044030 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048468 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050684 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051052 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051276 GO:0051570 GO:0051574 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060968 GO:0061085 GO:0061087 GO:0061458 GO:0065007 GO:0070827 GO:0070828 GO:0070829 GO:0071840 GO:0080090 GO:0090436 GO:0097159 GO:0098542 GO:0099402 GO:0140110 GO:1900109 GO:1900111 GO:1900363 GO:1901363 GO:1902275 GO:1903311 GO:1903506 GO:1905269 GO:2000024 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNMT1-RFD

Protein Analysis

625

Amino Acids

71.17

Weight (kDa)

7.85

Isoelectric Point (pI)

46.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD_NSD PF22908 93 - 161 6.9e-18 Histone-lysine N-methyltransferase NSD-like, PHD zinc finger
PHDvar_NSD PF23004 163 - 199 3.3e-06 Histone-lysine N-methyltransferase NSD-like, variant PHD zinc finger
Mtase_EDM2 PF26055 446 - 616 4.8e-88 EDM2 methyltransferase-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000343)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48090 AT5G48090 AT5G48090 AT5G55390 AT5G55390 AT5G55390
fragaria_vesca FvH4_3g23690 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160
malus_domestica MD03G1191000.v1.1 MD11G1207800.v1.1 MD11G1208000.v1.1
prunus_persica Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227600_v2.0.a1 Prupe.4G227700_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1
pyrus_communis pycom01g03400 pycom03g14420 pycom11g18100 pycom11g18140 pycom11g18150 pycom11g18160
rosa_chinensis RchiOBHm_Chr2g0145981 RchiOBHm_Chr4g0405241 RchiOBHm_Chr4g0405271 RchiOBHm_Chr5g0016201 RchiOBHm_Chr5g0041831 RchiOBHm_Chr5g0041871 RchiOBHm_Chr5g0041881 RchiOBHm_Chr5g0059241
rosa_laevigata RLG00000002117 RLG00000008861 RLG00000008862 RLG00000011000 RLG00000033216 RLG00000034097 RLG00000034101
rosa_multiflora Rmu_sc0000161.1_g000001 Rmu_sc0000861.1_g000040 Rmu_sc0007522.1_g000003 Rmu_sc0009443.1_g000015 Rmu_sc0022129.1_g000001 Rmu_sc0042315.1_g000001
rosa_roxburghii Rroxscaffold_1G00038660 Rroxscaffold_1G00038690 Rroxscaffold_5G00349560 Rroxscaffold_5G00349610 Rroxscaffold_6G00388370 Rroxscaffold_7G00188740
rosa_rugosa Rorug03G0199700 Rorug04G0055400 Rorug04G0055500 Rorug04G0055900 Rorug04G0056000 Rorug04G0056100 Rorug04G0056100 Rorug04G0056200 Rorug05G0195600 Rorug05G0195700 Rorug05G0195800 Rorug05G0195900 Rorug05G0196800 Rorug05G0385000
rosa_samantha Rh4AG129900 Rh4AG130100 Rh4BG124200 Rh4BG124400 Rh4BG124500 Rh4CG137200 Rh4CG137300 Rh4DG123500 Rh4DG123700 Rh5AG280800 Rh5AG281400 Rh5BG286700 Rh5BG287000 Rh5BG397800 Rh5CG318100 Rh5CG318600 Rh5CG421600 Rh5DG132300 Rh5DG132400 Rh5DG295400 Rh5DG295700 Rh7BG475300
rosa_wichuraiana Rw0G001330 Rw0G005730 Rw4G008670 Rw4G010510 Rw4G010540 Rw5G026450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 156
AccII CGCG 1 cut(s) 359
AciI CCGC 6 cut(s) 226, 357, 670, 1282, 1790, 1793
AclWI GGATC 3 cut(s) 205, 987, 1747
AcoI YGGCCR 2 cut(s) 1279, 1855
AcsI RAATTY 6 cut(s) 272, 617, 740, 749, 1610, 1777
AcuI CTGAAG 4 cut(s) 450, 1185, 1351, 1372
AfaI GTAC 3 cut(s) 566, 948, 1058
AfiI CCNNNNNNNGG 1 cut(s) 1562
AflII CTTAAG 1 cut(s) 1028
AflIII ACRYGT 1 cut(s) 470
AgsI TTSAA 5 cut(s) 17, 440, 755, 1415, 1610
AjiI CACGTC 1 cut(s) 1750
AjnI CCWGG 3 cut(s) 647, 1345, 1735
Alw21I GWGCWC 1 cut(s) 1833
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 3 cut(s) 205, 987, 1747
AlwNI CAGNNNCTG 2 cut(s) 267, 1178
AoxI GGCC 5 cut(s) 911, 1279, 1532, 1836, 1855
ApeKI GCWGC 6 cut(s) 489, 995, 1158, 1228, 1574, 1823
ApoI RAATTY 6 cut(s) 272, 617, 740, 749, 1610, 1777
Asp700I GAANNNNTTC 1 cut(s) 826
AspS9I GGNCC 5 cut(s) 165, 312, 520, 730, 1532
AsuHPI GGTGA 1 cut(s) 1668
AsuII TTCGAA 1 cut(s) 1126
AvaII GGWCC 4 cut(s) 165, 312, 520, 730
AxyI CCTNAGG 1 cut(s) 161
BaeI ACNNNNGTAYC 2 cut(s) 1375, 1408
BanI GGYRCC 1 cut(s) 156
BarI GAAGNNNNNNTAC 2 cut(s) 1008, 1040
Bbv12I GWGCWC 1 cut(s) 1833
BbvI GCAGC 6 cut(s) 501, 982, 1170, 1215, 1586, 1810
BccI CCATC 5 cut(s) 83, 119, 387, 817, 922
BceAI ACGGC 1 cut(s) 1870
BcgI CGANNNNNNTGC 2 cut(s) 196, 230
BciT130I CCWGG 3 cut(s) 649, 1347, 1737
BciVI GTATCC 2 cut(s) 880, 1403
BclI TGATCA 1 cut(s) 1539
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 2 cut(s) 795, 1145
BfmI CTRYAG 1 cut(s) 180
BfrI CTTAAG 1 cut(s) 1028
BfuI GTATCC 2 cut(s) 880, 1403
BglII AGATCT 2 cut(s) 209, 716
BisI GCNGC 9 cut(s) 490, 996, 1159, 1229, 1282, 1575, 1790, 1793, 1824
BlpI GCTNAGC 1 cut(s) 1827
BlsI GCNGC 9 cut(s) 491, 997, 1160, 1230, 1283, 1576, 1791, 1794, 1825
Bme1390I CCNGG 3 cut(s) 649, 1347, 1737
Bme18I GGWCC 4 cut(s) 165, 312, 520, 730
BmgBI CACGTC 1 cut(s) 1750
BmgT120I GGNCC 5 cut(s) 165, 312, 520, 730, 1532
BmiI GGNNCC 6 cut(s) 158, 313, 731, 1328, 1378, 1533
BmrFI CCNGG 3 cut(s) 649, 1347, 1737
BmsI GCATC 3 cut(s) 322, 1007, 1159
BpmI CTGGAG 2 cut(s) 210, 1368
Bpu1102I GCTNAGC 1 cut(s) 1827
Bpu14I TTCGAA 1 cut(s) 1126
Bsa29I ATCGAT 2 cut(s) 1705, 1767
BsaAI YACGTR 1 cut(s) 471
BsaBI GATNNNNATC 1 cut(s) 1711
BsaJI CCNNGG 5 cut(s) 336, 584, 648, 864, 1293
BsaXI ACNNNNNCTCC 6 cut(s) 296, 326, 1798, 1828, 1844, 1874
Bsc4I CCNNNNNNNGG 1 cut(s) 1562
Bse1I ACTGG 3 cut(s) 476, 890, 1311
Bse21I CCTNAGG 1 cut(s) 161
Bse8I GATNNNNATC 1 cut(s) 1711
BseBI CCWGG 3 cut(s) 649, 1347, 1737
BseCI ATCGAT 2 cut(s) 1705, 1767
BseDI CCNNGG 5 cut(s) 336, 584, 648, 864, 1293
BseGI GGATG 7 cut(s) 49, 337, 379, 658, 1271, 1503, 1705
BseJI GATNNNNATC 1 cut(s) 1711
BseLI CCNNNNNNNGG 1 cut(s) 1562
BseMII CTCAG 4 cut(s) 20, 90, 1107, 1818
BseNI ACTGG 3 cut(s) 476, 890, 1311
BseRI GAGGAG 5 cut(s) 617, 797, 982, 1529, 1616
BseXI GCAGC 6 cut(s) 501, 982, 1170, 1215, 1586, 1810
BsgI GTGCAG 2 cut(s) 508, 1177
Bsh1236I CGCG 1 cut(s) 359
BshFI GGCC 5 cut(s) 913, 1281, 1534, 1838, 1857
BshNI GGYRCC 1 cut(s) 156
BshVI ATCGAT 2 cut(s) 1705, 1767
BsiHKAI GWGCWC 1 cut(s) 1833
BslFI GGGAC 1 cut(s) 743
BslI CCNNNNNNNGG 1 cut(s) 1562
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 1 cut(s) 743
BsnI GGCC 5 cut(s) 913, 1281, 1534, 1838, 1857
Bsp119I TTCGAA 1 cut(s) 1126
Bsp1286I GDGCHC 1 cut(s) 1833
Bsp1720I GCTNAGC 1 cut(s) 1827
BspACI CCGC 6 cut(s) 226, 357, 670, 1282, 1790, 1793
BspANI GGCC 5 cut(s) 913, 1281, 1534, 1838, 1857
BspCNI CTCAG 4 cut(s) 19, 89, 1108, 1819
BspDI ATCGAT 2 cut(s) 1705, 1767
BspFNI CGCG 1 cut(s) 359
BspHI TCATGA 1 cut(s) 931
BspLI GGNNCC 6 cut(s) 158, 313, 731, 1328, 1378, 1533
BspPI GGATC 3 cut(s) 205, 987, 1747
BspT104I TTCGAA 1 cut(s) 1126
BspT107I GGYRCC 1 cut(s) 156
BspTI CTTAAG 1 cut(s) 1028
BsrI ACTGG 3 cut(s) 476, 890, 1311
BssECI CCNNGG 5 cut(s) 336, 584, 648, 864, 1293
BssT1I CCWWGG 3 cut(s) 336, 584, 1293
Bst2UI CCWGG 3 cut(s) 649, 1347, 1737
Bst4CI ACNGT 5 cut(s) 181, 269, 859, 868, 1504
Bst6I CTCTTC 3 cut(s) 750, 758, 831
BstAFI CTTAAG 1 cut(s) 1028
BstAPI GCANNNNNTGC 1 cut(s) 552
BstBAI YACGTR 1 cut(s) 471
BstBI TTCGAA 1 cut(s) 1126
BstC8I GCNNGC 3 cut(s) 548, 581, 696
BstDEI CTNAG 6 cut(s) 6, 76, 161, 950, 1116, 1827
BstDSI CCRYGG 1 cut(s) 864
BstF5I GGATG 7 cut(s) 49, 337, 379, 658, 1271, 1503, 1705
BstFNI CGCG 1 cut(s) 359
BstMAI GTCTC 1 cut(s) 9
BstMWI GCNNNNNNNGC 3 cut(s) 99, 552, 1580
BstNI CCWGG 3 cut(s) 649, 1347, 1737
BstNSI RCATGY 3 cut(s) 550, 698, 1235
BstSCI CCNGG 3 cut(s) 647, 1345, 1735
BstSFI CTRYAG 1 cut(s) 180
BstUI CGCG 1 cut(s) 359
BstV1I GCAGC 6 cut(s) 501, 982, 1170, 1215, 1586, 1810
BstX2I RGATCY 4 cut(s) 197, 209, 716, 979
BstXI CCANNNNNNTGG 1 cut(s) 1865
BstYI RGATCY 4 cut(s) 197, 209, 716, 979
Bsu15I ATCGAT 2 cut(s) 1705, 1767
Bsu36I CCTNAGG 1 cut(s) 161
BsuI GTATCC 2 cut(s) 880, 1403
BsuRI GGCC 5 cut(s) 913, 1281, 1534, 1838, 1857
BsuTUI ATCGAT 2 cut(s) 1705, 1767
BtgI CCRYGG 1 cut(s) 864
BtgZI GCGATG 1 cut(s) 135
BtrI CACGTC 1 cut(s) 1750
BtsCI GGATG 7 cut(s) 49, 337, 379, 658, 1271, 1503, 1705
BtsIMutI CAGTG 4 cut(s) 84, 293, 1161, 1778
Cac8I GCNNGC 3 cut(s) 548, 581, 696
CaiI CAGNNNCTG 2 cut(s) 267, 1178
CciI TCATGA 1 cut(s) 931
Cfr13I GGNCC 5 cut(s) 165, 312, 520, 730, 1532
ClaI ATCGAT 2 cut(s) 1705, 1767
CseI GACGC 1 cut(s) 71
Csp6I GTAC 3 cut(s) 565, 947, 1057
CviAII CATG 7 cut(s) 173, 524, 547, 695, 932, 1052, 1232
CviQI GTAC 3 cut(s) 565, 947, 1057
DdeI CTNAG 6 cut(s) 6, 76, 161, 950, 1116, 1827
DraI TTTAAA 1 cut(s) 277
EaeI YGGCCR 2 cut(s) 1279, 1855
Eam1104I CTCTTC 3 cut(s) 750, 758, 831
EarI CTCTTC 3 cut(s) 750, 758, 831
Eco130I CCWWGG 3 cut(s) 336, 584, 1293
Eco32I GATATC 1 cut(s) 1785
Eco47I GGWCC 4 cut(s) 165, 312, 520, 730
Eco57I CTGAAG 4 cut(s) 450, 1185, 1351, 1372
Eco81I CCTNAGG 1 cut(s) 161
EcoO109I RGGNCCY 2 cut(s) 165, 312
EcoRII CCWGG 3 cut(s) 647, 1345, 1735
EcoRV GATATC 1 cut(s) 1785
EcoT14I CCWWGG 3 cut(s) 336, 584, 1293
ErhI CCWWGG 3 cut(s) 336, 584, 1293
FaeI CATG 7 cut(s) 176, 527, 550, 698, 935, 1055, 1235
FalI AAGNNNNNCTT 4 cut(s) 901, 933, 1418, 1450
FaqI GGGAC 1 cut(s) 743
FatI CATG 7 cut(s) 172, 523, 546, 694, 931, 1051, 1231
FauI CCCGC 1 cut(s) 219
FbaI TGATCA 1 cut(s) 1539
Fnu4HI GCNGC 9 cut(s) 490, 996, 1159, 1229, 1282, 1575, 1790, 1793, 1824
FokI GGATG 7 cut(s) 56, 344, 366, 665, 1258, 1510, 1712
Fsp4HI GCNGC 9 cut(s) 490, 996, 1159, 1229, 1282, 1575, 1790, 1793, 1824
FspBI CTAG 2 cut(s) 795, 1145
GluI GCNGC 9 cut(s) 490, 996, 1159, 1229, 1282, 1575, 1790, 1793, 1824
GsuI CTGGAG 2 cut(s) 210, 1368
HaeIII GGCC 5 cut(s) 913, 1281, 1534, 1838, 1857
HgaI GACGC 1 cut(s) 71
Hin1II CATG 7 cut(s) 176, 527, 550, 698, 935, 1055, 1235
HincII GTYRAC 2 cut(s) 249, 1747
HindII GTYRAC 2 cut(s) 249, 1747
HindIII AAGCTT 1 cut(s) 1409
HinfI GANTC 7 cut(s) 74, 422, 827, 928, 937, 959, 1566
HphI GGTGA 1 cut(s) 1668
Hpy166II GTNNAC 6 cut(s) 82, 249, 481, 1078, 1363, 1747
Hpy188I TCNGA 3 cut(s) 35, 319, 964
Hpy8I GTNNAC 6 cut(s) 82, 249, 481, 1078, 1363, 1747
HpyAV CCTTC 8 cut(s) 143, 497, 511, 601, 620, 792, 1100, 1483
HpyCH4III ACNGT 5 cut(s) 181, 269, 859, 868, 1504
HpyCH4IV ACGT 2 cut(s) 470, 1749
HpyF10VI GCNNNNNNNGC 3 cut(s) 99, 552, 1580
HpyF3I CTNAG 6 cut(s) 6, 76, 161, 950, 1116, 1827
HpySE526I ACGT 2 cut(s) 470, 1749
Hsp92II CATG 7 cut(s) 176, 527, 550, 698, 935, 1055, 1235
Ksp22I TGATCA 1 cut(s) 1539
LmnI GCTCC 6 cut(s) 784, 811, 904, 1249, 1332, 1629
Lsp1109I GCAGC 6 cut(s) 501, 982, 1170, 1215, 1586, 1810
LweI GCATC 3 cut(s) 322, 1007, 1159
MaeI CTAG 2 cut(s) 795, 1145
MaeII ACGT 2 cut(s) 470, 1749
MaeIII GTNAC 3 cut(s) 59, 399, 1518
MflI RGATCY 4 cut(s) 197, 209, 716, 979
MhlI GDGCHC 1 cut(s) 1833
MluCI AATT 9 cut(s) 272, 527, 617, 740, 749, 1038, 1477, 1610, 1777
MlyI GAGTC 2 cut(s) 68, 1575
MmeI TCCRAC 2 cut(s) 1067, 1641
MroXI GAANNNNTTC 1 cut(s) 826
MseI TTAA 6 cut(s) 276, 1007, 1029, 1200, 1254, 1476
MslI CAYNNNNRTG 1 cut(s) 1335
MspCI CTTAAG 1 cut(s) 1028
MspR9I CCNGG 3 cut(s) 649, 1347, 1737
MvaI CCWGG 3 cut(s) 649, 1347, 1737
MvnI CGCG 1 cut(s) 359
MwoI GCNNNNNNNGC 3 cut(s) 99, 552, 1580
NlaIII CATG 7 cut(s) 176, 527, 550, 698, 935, 1055, 1235
NlaIV GGNNCC 6 cut(s) 158, 313, 731, 1328, 1378, 1533
NmeAIII GCCGAG 1 cut(s) 195
NmuCI GTSAC 1 cut(s) 59
NspI RCATGY 3 cut(s) 550, 698, 1235
NspV TTCGAA 1 cut(s) 1126
PaeI GCATGC 2 cut(s) 550, 698
PagI TCATGA 1 cut(s) 931
PcsI WCGNNNNNNNCGW 1 cut(s) 695
PdmI GAANNNNTTC 1 cut(s) 826
PfeI GAWTC 5 cut(s) 422, 827, 928, 937, 959
PfoI TCCNGGA 1 cut(s) 1735
PkrI GCNGC 9 cut(s) 491, 997, 1160, 1230, 1283, 1576, 1791, 1794, 1825
PleI GAGTC 2 cut(s) 68, 1574
PpsI GAGTC 2 cut(s) 68, 1574
Ppu21I YACGTR 1 cut(s) 471
PpuMI RGGWCCY 2 cut(s) 165, 312
Psp5II RGGWCCY 2 cut(s) 165, 312
Psp6I CCWGG 3 cut(s) 647, 1345, 1735
PspGI CCWGG 3 cut(s) 647, 1345, 1735
PspN4I GGNNCC 6 cut(s) 158, 313, 731, 1328, 1378, 1533
PspPI GGNCC 5 cut(s) 165, 312, 520, 730, 1532
PspPPI RGGWCCY 2 cut(s) 165, 312
PstNI CAGNNNCTG 2 cut(s) 267, 1178
PsuI RGATCY 4 cut(s) 197, 209, 716, 979
RsaI GTAC 3 cut(s) 566, 948, 1058
RsaNI GTAC 3 cut(s) 565, 947, 1057
RseI CAYNNNNRTG 1 cut(s) 1335
SaqAI TTAA 6 cut(s) 276, 1007, 1029, 1200, 1254, 1476
SatI GCNGC 9 cut(s) 490, 996, 1159, 1229, 1282, 1575, 1790, 1793, 1824
Sau96I GGNCC 5 cut(s) 165, 312, 520, 730, 1532
SchI GAGTC 2 cut(s) 68, 1575
ScrFI CCNGG 3 cut(s) 649, 1347, 1737
SduI GDGCHC 1 cut(s) 1833
SfaNI GCATC 3 cut(s) 322, 1007, 1159
SfcI CTRYAG 1 cut(s) 180
SfuI TTCGAA 1 cut(s) 1126
SinI GGWCC 4 cut(s) 165, 312, 520, 730
SmiMI CAYNNNNRTG 1 cut(s) 1335
SmlI CTYRAG 1 cut(s) 1028
SmoI CTYRAG 1 cut(s) 1028
SphI GCATGC 2 cut(s) 550, 698
Sse9I AATT 9 cut(s) 272, 527, 617, 740, 749, 1038, 1477, 1610, 1777
SsiI CCGC 6 cut(s) 226, 357, 670, 1282, 1790, 1793
SspMI CTAG 2 cut(s) 795, 1145
StyD4I CCNGG 3 cut(s) 647, 1345, 1735
StyI CCWWGG 3 cut(s) 336, 584, 1293
TaaI ACNGT 5 cut(s) 181, 269, 859, 868, 1504
TaiI ACGT 2 cut(s) 473, 1752
TaqI TCGA 9 cut(s) 237, 385, 818, 1112, 1126, 1320, 1705, 1767, 1819
TasI AATT 9 cut(s) 272, 527, 617, 740, 749, 1038, 1477, 1610, 1777
TatI WGTACW 1 cut(s) 946
TauI GCSGC 3 cut(s) 1284, 1792, 1795
TfiI GAWTC 5 cut(s) 422, 827, 928, 937, 959
Tru1I TTAA 6 cut(s) 276, 1007, 1029, 1200, 1254, 1476
Tru9I TTAA 6 cut(s) 276, 1007, 1029, 1200, 1254, 1476
TscAI CASTG 4 cut(s) 84, 293, 1168, 1778
TseFI GTSAC 1 cut(s) 59
TseI GCWGC 6 cut(s) 489, 995, 1158, 1228, 1574, 1823
Tsp45I GTSAC 1 cut(s) 59
TspDTI ATGAA 5 cut(s) 161, 540, 849, 993, 1582
TspRI CASTG 4 cut(s) 84, 293, 1168, 1778
Vha464I CTTAAG 1 cut(s) 1028
VpaK11BI GGWCC 4 cut(s) 165, 312, 520, 730
XapI RAATTY 6 cut(s) 272, 617, 740, 749, 1610, 1777
XceI RCATGY 3 cut(s) 550, 698, 1235
XmnI GAANNNNTTC 1 cut(s) 826
XspI CTAG 2 cut(s) 795, 1145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.