AT5G55390

PHD zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000343
Physical Location & Seq
Reverse (-)
22447937 .. 22454805
6869 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G55390.3

Sequence Viewer

Length: 3894 bp
ATGACGTTCGTTGACGATGATGAAGAGGAAGACTTCTCTGTTCCTCAATCAGCTTCCAATTATTATTTCGAAGATGATGATAAAGAGCCTGTTTCGTTTGCTCGTCTCCCAATTCAATGGAGCGTGGAGGAGAAAGTTGATGGTAGTGGTTTAGGTTTTTACTTGCGAGGAAGATCTGATAACGGCCTTTTGCCTCTGCATAAGCTTGTTAAGGCTTGGAGATACGATCTTTCGAACTTCCAGCCTGAGATTTCTGTTCTTACGAAGGATAATATATGGATTAAGCTTGAGGAACCGAGGAAAAGCTATGGGGAATTGATTAGAACTGTTTTGGTCACGTTGCATTCCATTCAGTTTCTTAGGAGGAATCCCCAAGCGTCCGAGAAAGCTCTCTGGGAGAAATTAACTAGAAGTTTGAGGTCATATGATGTGAAGCCATCGCAGAATGATTTGGTGGATCATATTGGTTTAATCGCTGAAGCTGCGAAAAGAGATAGAAATTTGGCGAATTCGAAGTTTATACTTGCATTTCTCACAAAAAAGCCTACCAAAAGGAGATTACCTGACGAGGACAATGCAAAAGATGATTTCATAGTTGGAGATGAGGACACTTATGTAGCTTCCGATGAAGATGAATTGGATGATGAAGACGATGATTTTTTTGAGTCTGTTTGTGCAATATGTGACAATGGTGGCGAGATTTTGTGTTGTGAAGGAAGCTGCCTGAGATCATTTCATGCTACCAAAAAAGATGGTGAAGATTCACTTTGTGATTCTCTTGGCTTTAACAAGATGCAAGTGGAAGCAATTCAGAAATACTTTTGCCCAAACTGTGAGCATAAGATACATCAATGCTTCATTTGCAAGAACCTTGGCTCTTCTGATAACTCTTCTGGAGCAGCAGAGGTTTTCCAATGCGTGTCAGCCACCTGTGGCTACTTTTACCATCCTCACTGTGTCACAAGACGGCTACGTTTAGGAAATAAAGAAGAGTCTGAAGCACTAGAAAGACAAATCATTGCTGGAGAGTATACATGCCCATTGCACAAATGCAGTGTCTGTGAAAACGGAGAGGTTAAGACAGACTCTAATTTGCAATTTGCTGTTTGCCGGCGTTGTCCAAAGTCCTACCATAGAAAATGCCTACCGCGGGAAATTTCTTTTGAAGATATTGAGGACGAGGATATATTAACTAGGGCATGGGACGGACTCTTGCACAACCGTGTACTCATATATTGCCAAGAACATGAGATAGATGAAGAACTTCTGACACCAGTTAGAGACCATGTTAAGTTTCCTTTCACGGAAGAGCAGAAGGTCTTCGTGAAAGAGCAAAGAAGGATACTGGAATCACATGTGGGACGAGATAAAGCAAGACTTAAGGTTAAGGATCCTGCCTTACAAGATACTTGTGGAAAAGCTTCTAAGAATTCCTTTAGAAGTTCGTTTCCTTCTTCAAAAGATGGTTTCTCCACAAAGAAGCATGGATTAGTTTCATCCGTACCAGATCATTCGAGGAAACGTAAGGATATTGATCCATCCATAAAGCATAAAATGGTTCCACAAAAATCCCAGAAGATGATGGAAGACTCCCGTGAAGCTGGCAAAAACAAGCTGGGAGTAAAAGAAGCCCGTGATGCTGGTAAAAGCAAGATTTCACTGGGTGAGAGGTTGTTTAGTTATACCCAGGAACCTAATCCAGTAAAACCTGGGCGCGTGATTCCTGTTGATAGCAAGCACAATAAGACTGACTCAATTGCCTCCAAGGAGCCAGGAAGTGAAATTCCTACATTAGACAACGACTCTCAAAGGAGGCTCTTGGCAGTGATGAAAAAAGCTACGGAAGAAATAACTATGGGTACTATTTTAAAGAAATTCAAAATTCAATCTACTATGAGTACACACTCCACAAGGAATGTTGTGGACAAGACAATCACTATGGGGAAGGTAGAGGGATCAGTCCAGGCTATCAGAACAGCACTAAAAAAGCTTGAGGAAGGAGGAAACATTGAGGATGCAAAAGCAGTTTGTGAGCCAGAGGTTCTGAGCCAAATCCTCAAGTGGAAGGATAAGCTCAAAGTTTATCTTGCTCCTTTTCTCCATGGTGCACGCTATACCTCATTTGGTCGTCATTTTACTAATCCTGAAAAACTTCAACAGATTGTTGATAGGCTGCATTGGTATGCAGATGATGGTGATATGATTGTCGACTTCTGTTGTGGTTCTAATGACTTTAGCTGTCTGATGAACGCGAAGCTTGAAGAAACGGGGAAGAAGTGCTTATATAAAAATTACGATCTTTTTCCAGCGAAGAATAATTTCAATTTTGAGAGAAAGGATTGGATGACTGTAAGTAAAGATGAGTTGGAACCAGGTTCAAAGCTGATTATGGGGCTAAATCCACCATTTGGAGTCAATGCTTCTCTTGCAAACAAGTTTATTACCAAGGCTCTTGAGTTCCGCCCAAAGATTCTCATTCTCATTGTTCCTCCCGAGACTGAAAGGTTAGATAAAAAGAAGTCATCATATGTGCTTATATGGGAGGATAAGACGTTCCTATCTGGAAATTCATTTTACCTGCCTGGTTCTGTCAATGAAGAAGACAAGCAATTGGAAGACTGGAACCTTGTTCCTCCGCCACTTTCTCTCTGGAGTCGGTCCGACTTTGCAGCCAAGCACAAGAAAATAGCGGAGAAGCATTGCCATTTGTCTAGGGATGTGGGGAGCTCAAAGTTAAAGATAGTGGAAGAAGAAGCAAACGCATCTTTGCATCCACTTGGAGCTTCTGATGGCATGTGTGATGATATTCCTATGGAAAAGGATGAACTTGAGGTAGCTGAATGCGTTAATAAAATCTTAGTCTCTGAGAAAATCGACACAGTAGAAACTGTAGCACGTGTACATCAGTCAGATCACTTGTCACGGAGAAGTCAGCTGAAAAAGGAGGGAAAGACCAAAGACTACTCTGGTAGGAAGCTTGGGAAATCTATGGATTCTAATAATGTGGATTGGAAGAGCAATGACATGGAAGAGGATCAAGGAGAGTTGAGTAGAGCACCAGAGAGCATCAAAGTAAAAATTCCCGAAATGACATCTGATTGGCAGAGTCCTGTTAGGTCTTCCCCAGATGATATATATGCTGTCTGCACATCAATTTCCACTACAACACCTCAAAGATCTCACGAGGCTGTAGAAGCATCTCTGCCTGCAATAACAAGGACAAAAAGTAACTTGGGAAAGAATATTAGAGAACATGGTTGTAAAGTGCAGGGCACTGGAAAACCTGAAGTGAGTCGGGATAGGCCTAGCTCTGTGAGAACTTCTAGAGAGGACATCTACACTGTTCGTCCATCGCCAGAAAATACGGGTCAGAAACCGTTTGAAGCTTTTGAACCATCTTATGGTGCAAGTTTGTCCCATTTCGACGATGGTCTTGCTGCTAAGTATGGTGGTTTCGGTGGAGGCTATAGAATGCCGGATCCTCCTTTCCTACCGGATCAGTTTCCATTGAGAAATGGTCCTAACGAGATGTTTGATTTCCGAGGATATTCAGACCTTGATAGAGGGATTGGTCAAAGAGAATATCCACAGCAGTACGGTGGGCACTTGGACCCCATGTTAGCTCCTCCTCCTCCTCCAAATCTGATGGACAATGCATTCCCATTGCAACAACGTTATGCGCCTCATTTCGATCAAATGAATTACCAGAGGATGAGCTCTTTCCCACCTCAGCCTCCATTGCAACCTAGCGGACATAATCTCTTAAATCCTCATGACTTTCCACTGCCACCGCCACCACCTAGTGACTTCGAAATGAGTCCAAGGGGTTTTGCCCCTGGCCCGAACCCGAACTACCCTTATATGAGTCGATCTGGCGGTTGGATTAATGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006950 GO:0006952 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009791 GO:0009889 GO:0009893 GO:0009909 GO:0009911 GO:0009987 GO:0010228 GO:0010468 GO:0010556 GO:0010604 GO:0010638 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030154 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031326 GO:0031399 GO:0031401 GO:0031440 GO:0031935 GO:0031937 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0033043 GO:0033044 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043954 GO:0044030 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048468 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050684 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051052 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051276 GO:0051570 GO:0051574 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060968 GO:0061085 GO:0061087 GO:0061458 GO:0065007 GO:0070827 GO:0070828 GO:0070829 GO:0071840 GO:0080090 GO:0090436 GO:0097159 GO:0098542 GO:0099402 GO:0140110 GO:1900109 GO:1900111 GO:1900363 GO:1901363 GO:1902275 GO:1903311 GO:1903506 GO:1905269 GO:2000024 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNMT1-RFD

Protein Analysis

1297

Amino Acids

146.79

Weight (kDa)

6.03

Isoelectric Point (pI)

53.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD_NSD PF22908 282 - 349 7.8e-17 Histone-lysine N-methyltransferase NSD-like, PHD zinc finger
PHDvar_NSD PF23004 351 - 394 2.9e-06 Histone-lysine N-methyltransferase NSD-like, variant PHD zinc finger
Mtase_EDM2 PF26055 728 - 898 2.1e-88 EDM2 methyltransferase-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000343)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48090 AT5G48090 AT5G48090 AT5G55390 AT5G55390 AT5G55390
fragaria_vesca FvH4_3g23690 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160
malus_domestica MD03G1191000.v1.1 MD11G1207800.v1.1 MD11G1208000.v1.1
prunus_persica Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227600_v2.0.a1 Prupe.4G227700_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1
pyrus_communis pycom01g03400 pycom03g14420 pycom11g18100 pycom11g18140 pycom11g18150 pycom11g18160
rosa_chinensis RchiOBHm_Chr2g0145981 RchiOBHm_Chr4g0405241 RchiOBHm_Chr4g0405271 RchiOBHm_Chr5g0016201 RchiOBHm_Chr5g0041831 RchiOBHm_Chr5g0041871 RchiOBHm_Chr5g0041881 RchiOBHm_Chr5g0059241
rosa_laevigata RLG00000002117 RLG00000008861 RLG00000008862 RLG00000011000 RLG00000033216 RLG00000034097 RLG00000034101
rosa_multiflora Rmu_sc0000161.1_g000001 Rmu_sc0000861.1_g000040 Rmu_sc0007522.1_g000003 Rmu_sc0009443.1_g000015 Rmu_sc0022129.1_g000001 Rmu_sc0042315.1_g000001
rosa_roxburghii Rroxscaffold_1G00038660 Rroxscaffold_1G00038690 Rroxscaffold_5G00349560 Rroxscaffold_5G00349610 Rroxscaffold_6G00388370 Rroxscaffold_7G00188740
rosa_rugosa Rorug03G0199700 Rorug04G0055400 Rorug04G0055500 Rorug04G0055900 Rorug04G0056000 Rorug04G0056100 Rorug04G0056100 Rorug04G0056200 Rorug05G0195600 Rorug05G0195700 Rorug05G0195800 Rorug05G0195900 Rorug05G0196800 Rorug05G0385000
rosa_samantha Rh4AG129900 Rh4AG130100 Rh4BG124200 Rh4BG124400 Rh4BG124500 Rh4CG137200 Rh4CG137300 Rh4DG123500 Rh4DG123700 Rh5AG280800 Rh5AG281400 Rh5BG286700 Rh5BG287000 Rh5BG397800 Rh5CG318100 Rh5CG318600 Rh5CG421600 Rh5DG132300 Rh5DG132400 Rh5DG295400 Rh5DG295700 Rh7BG475300
rosa_wichuraiana Rw0G001330 Rw0G005730 Rw4G008670 Rw4G010510 Rw4G010540 Rw5G026450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 2586
AccB7I CCANNNNNTGG 2 cut(s) 2408, 3401
AccI GTMKAC 2 cut(s) 1031, 2208
AccII CGCG 3 cut(s) 1150, 1716, 2252
AciI CCGC 8 cut(s) 1148, 1150, 2461, 2636, 2690, 3750, 3791, 3876
AclI AACGTT 1 cut(s) 3673
AclWI GGATC 9 cut(s) 465, 1385, 1398, 1529, 1963, 3042, 3473, 3486, 3504
AcsI RAATTY 9 cut(s) 499, 508, 1155, 1429, 1782, 1874, 1881, 2566, 3078
AcuI CTGAAG 3 cut(s) 498, 1017, 3306
AcvI CACGTG 1 cut(s) 2897
AdeI CACNNNGTG 3 cut(s) 770, 1664, 3803
AfaI GTAC 6 cut(s) 1227, 1503, 1861, 1900, 2901, 3596
AfiI CCNNNNNNNGG 3 cut(s) 1150, 2408, 3401
AflII CTTAAG 1 cut(s) 1379
AflIII ACRYGT 2 cut(s) 1354, 2896
AjnI CCWGG 7 cut(s) 1686, 1708, 1771, 1962, 2371, 2581, 3835
AjuI GAANNNNNNNTTGG 2 cut(s) 50, 82
AleI CACNNNNGTG 1 cut(s) 1221
AloI GAACNNNNNNTCC 2 cut(s) 2537, 2569
Alw21I GWGCWC 4 cut(s) 2110, 2729, 3058, 3719
Alw26I GTCTC 4 cut(s) 110, 1275, 2489, 2866
Alw44I GTGCAC 1 cut(s) 2106
AlwI GGATC 9 cut(s) 465, 1385, 1398, 1529, 1963, 3042, 3473, 3486, 3504
AlwNI CAGNNNCTG 1 cut(s) 1059
Ama87I CYCGRG 1 cut(s) 2492
AoxI GGCC 3 cut(s) 184, 3302, 3838
ApaLI GTGCAC 1 cut(s) 2106
ApeKI GCWGC 6 cut(s) 482, 720, 899, 2173, 2669, 3437
ApoI RAATTY 9 cut(s) 499, 508, 1155, 1429, 1782, 1874, 1881, 2566, 3078
ArsI GACNNNNNNTTYG 2 cut(s) 1041, 1073
AseI ATTAAT 1 cut(s) 3885
Asp700I GAANNNNTTC 6 cut(s) 807, 1263, 1319, 1420, 2151, 2318
AspLEI GCGC 2 cut(s) 1716, 3682
AspS9I GGNCC 4 cut(s) 2658, 3518, 3610, 3839
AsuHPI GGTGA 3 cut(s) 767, 1676, 2207
AsuII TTCGAA 4 cut(s) 69, 233, 512, 3810
AvaI CYCGRG 1 cut(s) 2492
AvaII GGWCC 3 cut(s) 2658, 3518, 3610
BaeGI GKGCMC 3 cut(s) 2110, 3275, 3606
BamHI GGATCC 2 cut(s) 1390, 3478
BanII GRGCYC 2 cut(s) 2729, 3719
BauI CACGAG 1 cut(s) 3182
BbrPI CACGTG 1 cut(s) 2897
BbsI GAAGAC 7 cut(s) 36, 654, 1312, 1593, 2607, 2622, 3111
Bbv12I GWGCWC 4 cut(s) 2110, 2729, 3058, 3719
BbvCI CCTCAGC 1 cut(s) 3729
BbvI GCAGC 6 cut(s) 469, 707, 911, 2160, 2681, 3424
BceAI ACGGC 2 cut(s) 199, 983
BcgI CGANNNNNNTGC 4 cut(s) 557, 591, 3416, 3450
BciT130I CCWGG 7 cut(s) 1688, 1710, 1773, 1964, 2373, 2583, 3837
BciVI GTATCC 1 cut(s) 1335
BcoDI GTCTC 4 cut(s) 110, 1275, 2489, 2866
BfaI CTAG 9 cut(s) 408, 1004, 1194, 2712, 3306, 3324, 3747, 3801, 3892
BfmI CTRYAG 3 cut(s) 2889, 3189, 3466
BfrI CTTAAG 1 cut(s) 1379
BfuAI ACCTGC 1 cut(s) 2586
BfuI GTATCC 1 cut(s) 1335
BglII AGATCT 2 cut(s) 173, 3176
BisI GCNGC 6 cut(s) 483, 721, 900, 2174, 2670, 3438
BlsI GCNGC 6 cut(s) 484, 722, 901, 2175, 2671, 3439
Bme1390I CCNGG 7 cut(s) 1688, 1710, 1773, 1964, 2373, 2583, 3837
Bme18I GGWCC 3 cut(s) 2658, 3518, 3610
BmeT110I CYCGRG 1 cut(s) 2492
BmgT120I GGNCC 4 cut(s) 2658, 3518, 3610, 3839
BmiI GGNNCC 9 cut(s) 294, 1392, 1560, 1692, 1770, 2370, 2624, 3480, 3612
BmrFI CCNGG 7 cut(s) 1688, 1710, 1773, 1964, 2373, 2583, 3837
BmrI ACTGGG 1 cut(s) 1670
BmsI GCATC 7 cut(s) 783, 1627, 2005, 2771, 2779, 3075, 3206
BmuI ACTGGG 1 cut(s) 1670
BoxI GACNNNNGTC 1 cut(s) 3429
BpiI GAAGAC 7 cut(s) 36, 654, 1312, 1593, 2607, 2622, 3111
BpmI CTGGAG 3 cut(s) 915, 1044, 2671
Bpu10I CCTNAGC 1 cut(s) 3729
Bpu14I TTCGAA 4 cut(s) 69, 233, 512, 3810
BpuEI CTTGAG 5 cut(s) 308, 2012, 2042, 2474, 2849
BsaAI YACGTR 1 cut(s) 2897
BsaBI GATNNNNATC 1 cut(s) 1533
BsaI GGTCTC 1 cut(s) 1275
BsaWI WCCGGW 1 cut(s) 3493
Bsc4I CCNNNNNNNGG 3 cut(s) 1150, 2408, 3401
Bse118I RCCGGY 1 cut(s) 1110
Bse1I ACTGG 6 cut(s) 1274, 1350, 1665, 1700, 2624, 3280
Bse3DI GCAATG 6 cut(s) 1017, 1040, 2698, 3025, 3662, 3737
Bse8I GATNNNNATC 1 cut(s) 1533
BseBI CCWGG 7 cut(s) 1688, 1710, 1773, 1964, 2373, 2583, 3837
BseJI GATNNNNATC 1 cut(s) 1533
BseLI CCNNNNNNNGG 3 cut(s) 1150, 2408, 3401
BseMI GCAATG 6 cut(s) 1017, 1040, 2698, 3025, 3662, 3737
BseMII CTCAG 5 cut(s) 237, 716, 2036, 2856, 3743
BseNI ACTGG 6 cut(s) 1274, 1350, 1665, 1700, 2624, 3280
BseRI GAGGAG 5 cut(s) 143, 3615, 3618, 3621, 3624
BseSI GKGCMC 3 cut(s) 2110, 3275, 3606
BseXI GCAGC 6 cut(s) 469, 707, 911, 2160, 2681, 3424
BseYI CCCAGC 1 cut(s) 1615
BsgI GTGCAG 2 cut(s) 3130, 3287
Bsh1236I CGCG 3 cut(s) 1150, 1716, 2252
BshFI GGCC 3 cut(s) 186, 3304, 3840
BsiHKAI GWGCWC 4 cut(s) 2110, 2729, 3058, 3719
BsiHKCI CYCGRG 1 cut(s) 2492
BsiSI CCGG 3 cut(s) 1111, 3476, 3494
BslFI GGGAC 3 cut(s) 1217, 1374, 3400
BslI CCNNNNNNNGG 3 cut(s) 1150, 2408, 3401
BsmAI GTCTC 4 cut(s) 110, 1275, 2489, 2866
BsmBI CGTCTC 1 cut(s) 110
BsmFI GGGAC 3 cut(s) 1217, 1374, 3400
BsmI GAATGC 4 cut(s) 343, 2846, 3477, 3656
BsnI GGCC 3 cut(s) 186, 3304, 3840
Bso31I GGTCTC 1 cut(s) 1275
BsoBI CYCGRG 1 cut(s) 2492
Bsp119I TTCGAA 4 cut(s) 69, 233, 512, 3810
Bsp1286I GDGCHC 6 cut(s) 2110, 2729, 3058, 3275, 3606, 3719
Bsp1407I TGTACA 1 cut(s) 2899
Bsp19I CCATGG 1 cut(s) 2101
BspACI CCGC 8 cut(s) 1148, 1150, 2461, 2636, 2690, 3750, 3791, 3876
BspANI GGCC 3 cut(s) 186, 3304, 3840
BspCNI CTCAG 5 cut(s) 238, 717, 2037, 2857, 3742
BspFNI CGCG 3 cut(s) 1150, 1716, 2252
BspHI TCATGA 1 cut(s) 3772
BspLI GGNNCC 9 cut(s) 294, 1392, 1560, 1692, 1770, 2370, 2624, 3480, 3612
BspMI ACCTGC 1 cut(s) 2586
BspPI GGATC 9 cut(s) 465, 1385, 1398, 1529, 1963, 3042, 3473, 3486, 3504
BspQI GCTCTTC 3 cut(s) 883, 1302, 3008
BspT104I TTCGAA 4 cut(s) 69, 233, 512, 3810
BspTI CTTAAG 1 cut(s) 1379
BspTNI GGTCTC 1 cut(s) 1275
BsrDI GCAATG 6 cut(s) 1017, 1040, 2698, 3025, 3662, 3737
BsrFI RCCGGY 1 cut(s) 1110
BsrGI TGTACA 1 cut(s) 2899
BsrI ACTGG 6 cut(s) 1274, 1350, 1665, 1700, 2624, 3280
BssAI RCCGGY 1 cut(s) 1110
BssNAI GTATAC 1 cut(s) 1032
BssSI CACGAG 1 cut(s) 3182
BssT1I CCWWGG 5 cut(s) 871, 1764, 2101, 2445, 3821
Bst1107I GTATAC 1 cut(s) 1032
Bst2BI CACGAG 1 cut(s) 3182
Bst2UI CCWGG 7 cut(s) 1688, 1710, 1773, 1964, 2373, 2583, 3837
Bst6I CTCTTC 7 cut(s) 18, 883, 895, 984, 1302, 3008, 3024
BstAFI CTTAAG 1 cut(s) 1379
BstAUI TGTACA 1 cut(s) 2899
BstBAI YACGTR 1 cut(s) 2897
BstBI TTCGAA 4 cut(s) 69, 233, 512, 3810
BstC8I GCNNGC 5 cut(s) 1112, 1603, 1736, 2110, 3207
BstDEI CTNAG 9 cut(s) 246, 359, 725, 1425, 2045, 2857, 2865, 3441, 3729
BstDSI CCRYGG 2 cut(s) 1148, 2101
BstFNI CGCG 3 cut(s) 1150, 1716, 2252
BstHHI GCGC 2 cut(s) 1716, 3682
BstMAI GTCTC 4 cut(s) 110, 1275, 2489, 2866
BstMWI GCNNNNNNNGC 6 cut(s) 482, 861, 1637, 2426, 3194, 3739
BstNI CCWGG 7 cut(s) 1688, 1710, 1773, 1964, 2373, 2583, 3837
BstNSI RCATGY 3 cut(s) 1038, 1358, 2797
BstPAI GACNNNNGTC 1 cut(s) 3429
BstSCI CCNGG 7 cut(s) 1686, 1708, 1771, 1962, 2371, 2581, 3835
BstSFI CTRYAG 3 cut(s) 2889, 3189, 3466
BstSLI GKGCMC 3 cut(s) 2110, 3275, 3606
BstUI CGCG 3 cut(s) 1150, 1716, 2252
BstV1I GCAGC 6 cut(s) 469, 707, 911, 2160, 2681, 3424
BstV2I GAAGAC 7 cut(s) 36, 654, 1312, 1593, 2607, 2622, 3111
BstX2I RGATCY 4 cut(s) 173, 1390, 3176, 3478
BstXI CCANNNNNNTGG 1 cut(s) 117
BstYI RGATCY 4 cut(s) 173, 1390, 3176, 3478
BstZ17I GTATAC 1 cut(s) 1032
BsuI GTATCC 1 cut(s) 1335
BsuRI GGCC 3 cut(s) 186, 3304, 3840
BtgI CCRYGG 2 cut(s) 1148, 2101
BtgZI GCGATG 2 cut(s) 423, 3336
BtsI GCAGTG 3 cut(s) 1060, 1830, 3782
BtsIMutI CAGTG 7 cut(s) 952, 1060, 1658, 1830, 3273, 3339, 3782
BveI ACCTGC 1 cut(s) 2586
Cac8I GCNNGC 5 cut(s) 1112, 1603, 1736, 2110, 3207
CaiI CAGNNNCTG 1 cut(s) 1059
CciI TCATGA 1 cut(s) 3772
CfoI GCGC 2 cut(s) 1716, 3682
Cfr10I RCCGGY 1 cut(s) 1110
Cfr13I GGNCC 4 cut(s) 2658, 3518, 3610, 3839
Cfr42I CCGCGG 1 cut(s) 1151
CpoI CGGWCCG 1 cut(s) 2658
CseI GACGC 1 cut(s) 366
CsiI ACCWGGT 1 cut(s) 2371
Csp6I GTAC 6 cut(s) 1226, 1502, 1860, 1899, 2900, 3595
CspI CGGWCCG 1 cut(s) 2658
CviQI GTAC 6 cut(s) 1226, 1502, 1860, 1899, 2900, 3595
DdeI CTNAG 9 cut(s) 246, 359, 725, 1425, 2045, 2857, 2865, 3441, 3729
DraI TTTAAA 1 cut(s) 1869
DraIII CACNNNGTG 3 cut(s) 770, 1664, 3803
Eam1104I CTCTTC 7 cut(s) 18, 883, 895, 984, 1302, 3008, 3024
EarI CTCTTC 7 cut(s) 18, 883, 895, 984, 1302, 3008, 3024
EciI GGCGGA 2 cut(s) 2450, 2625
Ecl136II GAGCTC 2 cut(s) 2727, 3717
Eco130I CCWWGG 5 cut(s) 871, 1764, 2101, 2445, 3821
Eco147I AGGCCT 1 cut(s) 3304
Eco24I GRGCYC 2 cut(s) 2729, 3719
Eco31I GGTCTC 1 cut(s) 1275
Eco47I GGWCC 3 cut(s) 2658, 3518, 3610
Eco53kI GAGCTC 2 cut(s) 2727, 3717
Eco57I CTGAAG 3 cut(s) 498, 1017, 3306
Eco72I CACGTG 1 cut(s) 2897
Eco88I CYCGRG 1 cut(s) 2492
EcoICRI GAGCTC 2 cut(s) 2727, 3717
EcoRI GAATTC 2 cut(s) 508, 1429
EcoRII CCWGG 7 cut(s) 1686, 1708, 1771, 1962, 2371, 2581, 3835
EcoT14I CCWWGG 5 cut(s) 871, 1764, 2101, 2445, 3821
EcoT22I ATGCAT 1 cut(s) 3658
EcoT38I GRGCYC 2 cut(s) 2729, 3719
ErhI CCWWGG 5 cut(s) 871, 1764, 2101, 2445, 3821
Esp3I CGTCTC 1 cut(s) 110
FaqI GGGAC 3 cut(s) 1217, 1374, 3400
FauI CCCGC 1 cut(s) 1143
FauNDI CATATG 2 cut(s) 424, 2527
FblI GTMKAC 2 cut(s) 1031, 2208
Fnu4HI GCNGC 6 cut(s) 483, 721, 900, 2174, 2670, 3438
FriOI GRGCYC 2 cut(s) 2729, 3719
Fsp4HI GCNGC 6 cut(s) 483, 721, 900, 2174, 2670, 3438
FspBI CTAG 9 cut(s) 408, 1004, 1194, 2712, 3306, 3324, 3747, 3801, 3892
GlaI GCGC 2 cut(s) 1715, 3681
GluI GCNGC 6 cut(s) 483, 721, 900, 2174, 2670, 3438
GsaI CCCAGC 1 cut(s) 1619
GsuI CTGGAG 3 cut(s) 915, 1044, 2671
HaeIII GGCC 3 cut(s) 186, 3304, 3840
HapII CCGG 3 cut(s) 1111, 3476, 3494
HgaI GACGC 1 cut(s) 366
HhaI GCGC 2 cut(s) 1716, 3682
Hin6I GCGC 2 cut(s) 1714, 3680
HinP1I GCGC 2 cut(s) 1714, 3680
HincII GTYRAC 2 cut(s) 13, 2209
HindII GTYRAC 2 cut(s) 13, 2209
HindIII AAGCTT 7 cut(s) 203, 284, 1419, 1988, 2255, 2975, 3384
HpaII CCGG 3 cut(s) 1111, 3476, 3494
HphI GGTGA 3 cut(s) 767, 1676, 2207
Hpy166II GTNNAC 8 cut(s) 13, 1032, 1226, 1901, 1924, 2108, 2209, 2900
Hpy8I GTNNAC 8 cut(s) 13, 1032, 1226, 1901, 1924, 2108, 2209, 2900
Hpy99I CGWCG 1 cut(s) 3428
HpyAV CCTTC 8 cut(s) 259, 707, 1309, 1332, 1461, 1939, 1991, 2059
HpyCH4IV ACGT 7 cut(s) 5, 338, 973, 1522, 2552, 2896, 3673
HpyF10VI GCNNNNNNNGC 6 cut(s) 482, 861, 1637, 2426, 3194, 3739
HpyF3I CTNAG 9 cut(s) 246, 359, 725, 1425, 2045, 2857, 2865, 3441, 3729
HpySE526I ACGT 7 cut(s) 5, 338, 973, 1522, 2552, 2896, 3673
HspAI GCGC 2 cut(s) 1714, 3680
KroI GCCGGC 1 cut(s) 1110
KroNI GCCGGC 1 cut(s) 1112
KspI CCGCGG 1 cut(s) 1151
LguI GCTCTTC 3 cut(s) 883, 1302, 3008
LmnI GCTCC 7 cut(s) 120, 896, 1768, 2095, 2724, 2780, 3628
Lsp1109I GCAGC 6 cut(s) 469, 707, 911, 2160, 2681, 3424
LweI GCATC 7 cut(s) 783, 1627, 2005, 2771, 2779, 3075, 3206
MabI ACCWGGT 1 cut(s) 2371
MaeI CTAG 9 cut(s) 408, 1004, 1194, 2712, 3306, 3324, 3747, 3801, 3892
MaeII ACGT 7 cut(s) 5, 338, 973, 1522, 2552, 2896, 3673
MaeIII GTNAC 6 cut(s) 334, 683, 958, 2919, 3227, 3803
MfeI CAATTG 2 cut(s) 1755, 2609
MflI RGATCY 4 cut(s) 173, 1390, 3176, 3478
MhlI GDGCHC 6 cut(s) 2110, 2729, 3058, 3275, 3606, 3719
MmeI TCCRAC 4 cut(s) 577, 2346, 2685, 3860
Mph1103I ATGCAT 1 cut(s) 3658
MroNI GCCGGC 1 cut(s) 1110
MroXI GAANNNNTTC 6 cut(s) 807, 1263, 1319, 1420, 2151, 2318
MslI CAYNNNNRTG 2 cut(s) 1221, 2181
MspA1I CMGCKG 2 cut(s) 1150, 2935
MspCI CTTAAG 1 cut(s) 1379
MspI CCGG 3 cut(s) 1111, 3476, 3494
MspR9I CCNGG 7 cut(s) 1688, 1710, 1773, 1964, 2373, 2583, 3837
MunI CAATTG 2 cut(s) 1755, 2609
Mva1269I GAATGC 4 cut(s) 343, 2846, 3477, 3656
MvaI CCWGG 7 cut(s) 1688, 1710, 1773, 1964, 2373, 2583, 3837
MvnI CGCG 3 cut(s) 1150, 1716, 2252
MwoI GCNNNNNNNGC 6 cut(s) 482, 861, 1637, 2426, 3194, 3739
NaeI GCCGGC 1 cut(s) 1112
NcoI CCATGG 1 cut(s) 2101
NdeI CATATG 2 cut(s) 424, 2527
NgoMIV GCCGGC 1 cut(s) 1110
NlaIV GGNNCC 9 cut(s) 294, 1392, 1560, 1692, 1770, 2370, 2624, 3480, 3612
NmuCI GTSAC 5 cut(s) 334, 683, 958, 2919, 3803
NsiI ATGCAT 1 cut(s) 3658
NspI RCATGY 3 cut(s) 1038, 1358, 2797
NspV TTCGAA 4 cut(s) 69, 233, 512, 3810
OliI CACNNNNGTG 1 cut(s) 1221
PagI TCATGA 1 cut(s) 3772
PceI AGGCCT 1 cut(s) 3304
PciI ACATGT 1 cut(s) 1354
PciSI GCTCTTC 3 cut(s) 883, 1302, 3008
PctI GAATGC 4 cut(s) 343, 2846, 3477, 3656
PdiI GCCGGC 1 cut(s) 1112
PdmI GAANNNNTTC 6 cut(s) 807, 1263, 1319, 1420, 2151, 2318
PfeI GAWTC 7 cut(s) 367, 761, 773, 1349, 1720, 2470, 2993
PflMI CCANNNNNTGG 2 cut(s) 2408, 3401
PkrI GCNGC 6 cut(s) 484, 722, 901, 2175, 2671, 3439
PmaCI CACGTG 1 cut(s) 2897
PmlI CACGTG 1 cut(s) 2897
Ppu21I YACGTR 1 cut(s) 2897
PscI ACATGT 1 cut(s) 1354
PshAI GACNNNNGTC 1 cut(s) 3429
PshBI ATTAAT 1 cut(s) 3885
Psp124BI GAGCTC 2 cut(s) 2729, 3719
Psp1406I AACGTT 1 cut(s) 3673
Psp6I CCWGG 7 cut(s) 1686, 1708, 1771, 1962, 2371, 2581, 3835
PspCI CACGTG 1 cut(s) 2897
PspFI CCCAGC 1 cut(s) 1615
PspGI CCWGG 7 cut(s) 1686, 1708, 1771, 1962, 2371, 2581, 3835
PspN4I GGNNCC 9 cut(s) 294, 1392, 1560, 1692, 1770, 2370, 2624, 3480, 3612
PspPI GGNCC 4 cut(s) 2658, 3518, 3610, 3839
PsrI GAACNNNNNNTAC 2 cut(s) 3836, 3868
PstNI CAGNNNCTG 1 cut(s) 1059
PsuI RGATCY 4 cut(s) 173, 1390, 3176, 3478
PvuII CAGCTG 1 cut(s) 2935
RsaI GTAC 6 cut(s) 1227, 1503, 1861, 1900, 2901, 3596
RsaNI GTAC 6 cut(s) 1226, 1502, 1860, 1899, 2900, 3595
RseI CAYNNNNRTG 2 cut(s) 1221, 2181
Rsr2I CGGWCCG 1 cut(s) 2658
RsrII CGGWCCG 1 cut(s) 2658
SacI GAGCTC 2 cut(s) 2729, 3719
SacII CCGCGG 1 cut(s) 1151
SalI GTCGAC 1 cut(s) 2207
SapI GCTCTTC 3 cut(s) 883, 1302, 3008
SatI GCNGC 6 cut(s) 483, 721, 900, 2174, 2670, 3438
Sau96I GGNCC 4 cut(s) 2658, 3518, 3610, 3839
ScrFI CCNGG 7 cut(s) 1688, 1710, 1773, 1964, 2373, 2583, 3837
SduI GDGCHC 6 cut(s) 2110, 2729, 3058, 3275, 3606, 3719
SexAI ACCWGGT 1 cut(s) 2371
SfaNI GCATC 7 cut(s) 783, 1627, 2005, 2771, 2779, 3075, 3206
SfcI CTRYAG 3 cut(s) 2889, 3189, 3466
Sfr303I CCGCGG 1 cut(s) 1151
SfuI TTCGAA 4 cut(s) 69, 233, 512, 3810
SgrBI CCGCGG 1 cut(s) 1151
SinI GGWCC 3 cut(s) 2658, 3518, 3610
SmiMI CAYNNNNRTG 2 cut(s) 1221, 2181
SmlI CTYRAG 6 cut(s) 287, 1379, 1991, 2057, 2453, 2828
SmoI CTYRAG 6 cut(s) 287, 1379, 1991, 2057, 2453, 2828
SseBI AGGCCT 1 cut(s) 3304
SsiI CCGC 8 cut(s) 1148, 1150, 2461, 2636, 2690, 3750, 3791, 3876
SspI AATATT 1 cut(s) 3244
SspMI CTAG 9 cut(s) 408, 1004, 1194, 2712, 3306, 3324, 3747, 3801, 3892
SstI GAGCTC 2 cut(s) 2729, 3719
StuI AGGCCT 1 cut(s) 3304
StyD4I CCNGG 7 cut(s) 1686, 1708, 1771, 1962, 2371, 2581, 3835
StyI CCWWGG 5 cut(s) 871, 1764, 2101, 2445, 3821
TaiI ACGT 7 cut(s) 8, 341, 976, 1525, 2555, 2899, 3676
TaqII GACCGA 1 cut(s) 2646
TatI WGTACW 3 cut(s) 1225, 1898, 2899
TfiI GAWTC 7 cut(s) 367, 761, 773, 1349, 1720, 2470, 2993
TscAI CASTG 7 cut(s) 959, 1060, 1665, 1830, 3280, 3346, 3789
TseFI GTSAC 5 cut(s) 334, 683, 958, 2919, 3803
TseI GCWGC 6 cut(s) 482, 720, 899, 2173, 2669, 3437
Tsp45I GTSAC 5 cut(s) 334, 683, 958, 2919, 3803
TspGWI ACGGA 6 cut(s) 1083, 1221, 1319, 1489, 1856, 2938
TspRI CASTG 7 cut(s) 959, 1060, 1665, 1830, 3280, 3346, 3789
Van91I CCANNNNNTGG 2 cut(s) 2408, 3401
Vha464I CTTAAG 1 cut(s) 1379
VneI GTGCAC 1 cut(s) 2106
VpaK11BI GGWCC 3 cut(s) 2658, 3518, 3610
VspI ATTAAT 1 cut(s) 3885
XapI RAATTY 9 cut(s) 499, 508, 1155, 1429, 1782, 1874, 1881, 2566, 3078
XbaI TCTAGA 1 cut(s) 3323
XceI RCATGY 3 cut(s) 1038, 1358, 2797
XcmI CCANNNNNNNNNTGG 2 cut(s) 2646, 3425
XmiI GTMKAC 2 cut(s) 1031, 2208
XmnI GAANNNNTTC 6 cut(s) 807, 1263, 1319, 1420, 2151, 2318
XspI CTAG 9 cut(s) 408, 1004, 1194, 2712, 3306, 3324, 3747, 3801, 3892
Zsp2I ATGCAT 1 cut(s) 3658
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.