Rmu_sc0007522.1_g000003

metal ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007522.1
OG0000343
Physical Location & Seq
Forward (+)
16988 .. 18592
1605 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007522.1_g000003.1.cds

Sequence Viewer

Length: 723 bp
atgactgtccagagggaggagctacccgtgggatctcggttgatcatggggctgaaccctccttttggagttaaagcatctcgggcgaaccagttcattgataaggctctcgggtttaatccaaagctcctaattcttattgttccatcagaaacacaaaggtactatgcagttgttcctctatctgatctctcttacgcacatgcatgcaaattatggaaggcatcaccttatgatctgatttgggagaattctcagcttctatcaggaaagtcattttatctacctggatcagttgatgtgaatggtaaacatatagaccagcataatgtgattccacctcctctctatctctggagtcggcctgattggtcttcggaacactatgctatagctcaagagcatggtcacatttctatacccaaatcagcaacggttgagaacagcagcactcattttgaagaccgaatcagggtgcacagaaatgttgcatatgcggacgacgacgctgcatctcggctcgggatgctatggagcggaggggcttgccggacggacgccagggatcggacggagcggtctgcagtcggtggagtcgccagagatggggttgcaggtcgggttctggcttctctcctgcaagcctcgcgccgctgtcgccacctgaaacgcctcagttgcgtcgacgtctgcactttaacaaagtttaaattatttcattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006950 GO:0006952 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009791 GO:0009889 GO:0009893 GO:0009909 GO:0009911 GO:0009987 GO:0010228 GO:0010468 GO:0010556 GO:0010604 GO:0010638 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030154 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031326 GO:0031399 GO:0031401 GO:0031440 GO:0031935 GO:0031937 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0033043 GO:0033044 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043954 GO:0044030 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048468 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050684 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051052 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051276 GO:0051570 GO:0051574 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060968 GO:0061085 GO:0061087 GO:0061458 GO:0065007 GO:0070827 GO:0070828 GO:0070829 GO:0071840 GO:0080090 GO:0090436 GO:0097159 GO:0098542 GO:0099402 GO:0140110 GO:1900109 GO:1900111 GO:1900363 GO:1901363 GO:1902275 GO:1903311 GO:1903506 GO:1905269 GO:2000024 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNMT1-RFD

Protein Analysis

240

Amino Acids

26.81

Weight (kDa)

9.24

Isoelectric Point (pI)

53.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Tree File
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000343)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48090 AT5G48090 AT5G48090 AT5G55390 AT5G55390 AT5G55390
fragaria_vesca FvH4_3g23690 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160
malus_domestica MD03G1191000.v1.1 MD11G1207800.v1.1 MD11G1208000.v1.1
prunus_persica Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227600_v2.0.a1 Prupe.4G227700_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1
pyrus_communis pycom01g03400 pycom03g14420 pycom11g18100 pycom11g18140 pycom11g18150 pycom11g18160
rosa_chinensis RchiOBHm_Chr2g0145981 RchiOBHm_Chr4g0405241 RchiOBHm_Chr4g0405271 RchiOBHm_Chr5g0016201 RchiOBHm_Chr5g0041831 RchiOBHm_Chr5g0041871 RchiOBHm_Chr5g0041881 RchiOBHm_Chr5g0059241
rosa_laevigata RLG00000002117 RLG00000008861 RLG00000008862 RLG00000011000 RLG00000033216 RLG00000034097 RLG00000034101
rosa_multiflora Rmu_sc0000161.1_g000001 Rmu_sc0000861.1_g000040 Rmu_sc0007522.1_g000003 Rmu_sc0009443.1_g000015 Rmu_sc0022129.1_g000001 Rmu_sc0042315.1_g000001
rosa_roxburghii Rroxscaffold_1G00038660 Rroxscaffold_1G00038690 Rroxscaffold_5G00349560 Rroxscaffold_5G00349610 Rroxscaffold_6G00388370 Rroxscaffold_7G00188740
rosa_rugosa Rorug03G0199700 Rorug04G0055400 Rorug04G0055500 Rorug04G0055900 Rorug04G0056000 Rorug04G0056100 Rorug04G0056100 Rorug04G0056200 Rorug05G0195600 Rorug05G0195700 Rorug05G0195800 Rorug05G0195900 Rorug05G0196800 Rorug05G0385000
rosa_samantha Rh4AG129900 Rh4AG130100 Rh4BG124200 Rh4BG124400 Rh4BG124500 Rh4CG137200 Rh4CG137300 Rh4DG123500 Rh4DG123700 Rh5AG280800 Rh5AG281400 Rh5BG286700 Rh5BG287000 Rh5BG397800 Rh5CG318100 Rh5CG318600 Rh5CG421600 Rh5DG132300 Rh5DG132400 Rh5DG295400 Rh5DG295700 Rh7BG475300
rosa_wichuraiana Rw0G001330 Rw0G005730 Rw4G008670 Rw4G010510 Rw4G010540 Rw5G026450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 577
AatII GACGTC 1 cut(s) 690
Acc36I ACCTGC 1 cut(s) 605
AccBSI CCGCTC 2 cut(s) 537, 577
AccI GTMKAC 1 cut(s) 684
AccII CGCG 1 cut(s) 649
AciI CCGC 4 cut(s) 497, 537, 577, 652
AclWI GGATC 3 cut(s) 40, 298, 573
AcsI RAATTY 1 cut(s) 250
AcyI GRCGYC 2 cut(s) 558, 687
AfaI GTAC 1 cut(s) 164
AfiI CCNNNNNNNGG 5 cut(s) 16, 65, 472, 567, 606
AgsI TTSAA 1 cut(s) 461
AjnI CCWGG 2 cut(s) 286, 560
AluBI AGCT 4 cut(s) 22, 127, 259, 395
AluI AGCT 4 cut(s) 22, 127, 259, 395
Alw21I GWGCWC 1 cut(s) 480
Alw44I GTGCAC 1 cut(s) 476
AlwI GGATC 3 cut(s) 40, 298, 573
Ama87I CYCGRG 3 cut(s) 81, 110, 521
AoxI GGCC 1 cut(s) 362
ApaLI GTGCAC 1 cut(s) 476
ApeKI GCWGC 2 cut(s) 447, 509
ApoI RAATTY 1 cut(s) 250
Asp700I GAANNNNTTC 1 cut(s) 92
AspLEI GCGC 1 cut(s) 651
AsuHPI GGTGA 1 cut(s) 219
AvaI CYCGRG 3 cut(s) 81, 110, 521
BaeGI GKGCMC 1 cut(s) 480
BbsI GAAGAC 2 cut(s) 366, 468
Bbv12I GWGCWC 1 cut(s) 480
BbvI GCAGC 2 cut(s) 459, 496
BccI CCATC 2 cut(s) 154, 599
BcgI CGANNNNNNTGC 2 cut(s) 491, 525
BciT130I CCWGG 2 cut(s) 288, 562
BclI TGATCA 1 cut(s) 42
BfmI CTRYAG 2 cut(s) 390, 582
BfuAI ACCTGC 1 cut(s) 605
BisI GCNGC 3 cut(s) 448, 510, 652
BlsI GCNGC 3 cut(s) 449, 511, 653
Bme1390I CCNGG 2 cut(s) 288, 562
BmeT110I CYCGRG 3 cut(s) 81, 110, 521
BmrFI CCNGG 2 cut(s) 288, 562
BmsI GCATC 4 cut(s) 86, 233, 516, 521
BpiI GAAGAC 2 cut(s) 366, 468
BpmI CTGGAG 1 cut(s) 376
BpuEI CTTGAG 1 cut(s) 381
BsaHI GRCGYC 2 cut(s) 558, 687
BsaJI CCNNGG 2 cut(s) 27, 561
Bsc4I CCNNNNNNNGG 5 cut(s) 16, 65, 472, 567, 606
Bse1I ACTGG 1 cut(s) 91
BseBI CCWGG 2 cut(s) 288, 562
BseDI CCNNGG 2 cut(s) 27, 561
BseGI GGATG 1 cut(s) 531
BseLI CCNNNNNNNGG 5 cut(s) 16, 65, 472, 567, 606
BseMII CTCAG 2 cut(s) 269, 688
BseNI ACTGG 1 cut(s) 91
BseRI GAGGAG 2 cut(s) 32, 333
BseSI GKGCMC 1 cut(s) 480
BseXI GCAGC 2 cut(s) 459, 496
BsgI GTGCAG 1 cut(s) 676
Bsh1236I CGCG 1 cut(s) 649
BshFI GGCC 1 cut(s) 364
BsiHKAI GWGCWC 1 cut(s) 480
BsiHKCI CYCGRG 3 cut(s) 81, 110, 521
BsiSI CCGG 1 cut(s) 550
BslI CCNNNNNNNGG 5 cut(s) 16, 65, 472, 567, 606
BsnI GGCC 1 cut(s) 364
BsoBI CYCGRG 3 cut(s) 81, 110, 521
Bsp1286I GDGCHC 1 cut(s) 480
Bsp143I GATC 6 cut(s) 32, 42, 187, 235, 290, 565
BspACI CCGC 4 cut(s) 497, 537, 577, 652
BspANI GGCC 1 cut(s) 364
BspCNI CTCAG 2 cut(s) 268, 687
BspFNI CGCG 1 cut(s) 649
BspMAI CTGCAG 1 cut(s) 586
BspMI ACCTGC 1 cut(s) 605
BspPI GGATC 3 cut(s) 40, 298, 573
BsrBI CCGCTC 2 cut(s) 537, 577
BsrI ACTGG 1 cut(s) 91
BssECI CCNNGG 2 cut(s) 27, 561
BssMI GATC 6 cut(s) 32, 42, 187, 235, 290, 565
BssNI GRCGYC 2 cut(s) 558, 687
Bst2UI CCWGG 2 cut(s) 288, 562
Bst4CI ACNGT 2 cut(s) 7, 436
BstACI GRCGYC 2 cut(s) 558, 687
BstC8I GCNNGC 3 cut(s) 208, 547, 642
BstDEI CTNAG 2 cut(s) 255, 674
BstDSI CCRYGG 1 cut(s) 27
BstF5I GGATG 1 cut(s) 531
BstFNI CGCG 1 cut(s) 649
BstHHI GCGC 1 cut(s) 651
BstKTI GATC 6 cut(s) 35, 45, 190, 238, 293, 568
BstMBI GATC 6 cut(s) 32, 42, 187, 235, 290, 565
BstMWI GCNNNNNNNGC 5 cut(s) 83, 526, 646, 657, 678
BstNI CCWGG 2 cut(s) 288, 562
BstNSI RCATGY 2 cut(s) 206, 210
BstSCI CCNGG 2 cut(s) 286, 560
BstSFI CTRYAG 2 cut(s) 390, 582
BstSLI GKGCMC 1 cut(s) 480
BstUI CGCG 1 cut(s) 649
BstV1I GCAGC 2 cut(s) 459, 496
BstV2I GAAGAC 2 cut(s) 366, 468
BstX2I RGATCY 1 cut(s) 32
BstYI RGATCY 1 cut(s) 32
BsuRI GGCC 1 cut(s) 364
BtgI CCRYGG 1 cut(s) 27
BtsCI GGATG 1 cut(s) 531
BveI ACCTGC 1 cut(s) 605
Cac8I GCNNGC 3 cut(s) 208, 547, 642
CfoI GCGC 1 cut(s) 651
CseI GACGC 3 cut(s) 515, 566, 670
Csp6I GTAC 1 cut(s) 163
CviAII CATG 4 cut(s) 46, 203, 207, 404
CviQI GTAC 1 cut(s) 163
DdeI CTNAG 2 cut(s) 255, 674
DpnI GATC 6 cut(s) 34, 44, 189, 237, 292, 567
DpnII GATC 6 cut(s) 32, 42, 187, 235, 290, 565
DraI TTTAAA 1 cut(s) 709
DrdI GACNNNNNNGTC 1 cut(s) 577
DseDI GACNNNNNNGTC 1 cut(s) 577
Eco88I CYCGRG 3 cut(s) 81, 110, 521
EcoRI GAATTC 1 cut(s) 250
EcoRII CCWGG 2 cut(s) 286, 560
EcoT22I ATGCAT 1 cut(s) 208
FaeI CATG 4 cut(s) 49, 206, 210, 407
FatI CATG 4 cut(s) 45, 202, 206, 403
FauNDI CATATG 1 cut(s) 493
FbaI TGATCA 1 cut(s) 42
FblI GTMKAC 1 cut(s) 684
Fnu4HI GCNGC 3 cut(s) 448, 510, 652
FokI GGATG 1 cut(s) 538
Fsp4HI GCNGC 3 cut(s) 448, 510, 652
GlaI GCGC 1 cut(s) 650
GluI GCNGC 3 cut(s) 448, 510, 652
GsuI CTGGAG 1 cut(s) 376
HaeIII GGCC 1 cut(s) 364
HapII CCGG 1 cut(s) 550
HgaI GACGC 3 cut(s) 515, 566, 670
HhaI GCGC 1 cut(s) 651
Hin1I GRCGYC 2 cut(s) 558, 687
Hin1II CATG 4 cut(s) 49, 206, 210, 407
Hin6I GCGC 1 cut(s) 649
HinP1I GCGC 1 cut(s) 649
HincII GTYRAC 1 cut(s) 685
HindII GTYRAC 1 cut(s) 685
HinfI GANTC 4 cut(s) 334, 358, 468, 594
HpaII CCGG 1 cut(s) 550
HphI GGTGA 1 cut(s) 219
Hpy166II GTNNAC 3 cut(s) 311, 478, 685
Hpy188I TCNGA 5 cut(s) 151, 187, 240, 379, 570
Hpy188III TCNNGA 5 cut(s) 10, 267, 355, 398, 523
Hpy8I GTNNAC 3 cut(s) 311, 478, 685
Hpy99I CGWCG 4 cut(s) 506, 509, 686, 689
HpyAV CCTTC 1 cut(s) 214
HpyCH4III ACNGT 2 cut(s) 7, 436
HpyCH4IV ACGT 1 cut(s) 687
HpyF10VI GCNNNNNNNGC 5 cut(s) 83, 526, 646, 657, 678
HpyF3I CTNAG 2 cut(s) 255, 674
HpySE526I ACGT 1 cut(s) 687
Hsp92I GRCGYC 2 cut(s) 558, 687
Hsp92II CATG 4 cut(s) 49, 206, 210, 407
HspAI GCGC 1 cut(s) 649
Ksp22I TGATCA 1 cut(s) 42
Kzo9I GATC 6 cut(s) 32, 42, 187, 235, 290, 565
LmnI GCTCC 4 cut(s) 19, 132, 534, 574
Lsp1109I GCAGC 2 cut(s) 459, 496
LweI GCATC 4 cut(s) 86, 233, 516, 521
MaeII ACGT 1 cut(s) 687
MaeIII GTNAC 1 cut(s) 407
MalI GATC 6 cut(s) 34, 44, 189, 237, 292, 567
MbiI CCGCTC 2 cut(s) 537, 577
MboI GATC 6 cut(s) 32, 42, 187, 235, 290, 565
MboII GAAGA 2 cut(s) 366, 473
MflI RGATCY 1 cut(s) 32
MhlI GDGCHC 1 cut(s) 480
MluCI AATT 4 cut(s) 132, 212, 250, 710
MlyI GAGTC 2 cut(s) 367, 603
MnlI CCTC 9 cut(s) 6, 10, 69, 189, 351, 354, 533, 655, 683
Mph1103I ATGCAT 1 cut(s) 208
MroXI GAANNNNTTC 1 cut(s) 92
MseI TTAA 4 cut(s) 72, 117, 698, 708
MslI CAYNNNNRTG 2 cut(s) 205, 483
MspA1I CMGCKG 1 cut(s) 654
MspI CCGG 1 cut(s) 550
MspR9I CCNGG 2 cut(s) 288, 562
MvaI CCWGG 2 cut(s) 288, 562
MvnI CGCG 1 cut(s) 649
MwoI GCNNNNNNNGC 5 cut(s) 83, 526, 646, 657, 678
NdeI CATATG 1 cut(s) 493
NdeII GATC 6 cut(s) 32, 42, 187, 235, 290, 565
NlaIII CATG 4 cut(s) 49, 206, 210, 407
NmeAIII GCCGAG 1 cut(s) 496
NmuCI GTSAC 1 cut(s) 407
NsiI ATGCAT 1 cut(s) 208
NspI RCATGY 2 cut(s) 206, 210
PaeI GCATGC 1 cut(s) 210
PdmI GAANNNNTTC 1 cut(s) 92
PfeI GAWTC 2 cut(s) 334, 468
PkrI GCNGC 3 cut(s) 449, 511, 653
PleI GAGTC 2 cut(s) 366, 602
PpsI GAGTC 2 cut(s) 366, 602
Psp6I CCWGG 2 cut(s) 286, 560
PspGI CCWGG 2 cut(s) 286, 560
PstI CTGCAG 1 cut(s) 586
PsuI RGATCY 1 cut(s) 32
RsaI GTAC 1 cut(s) 164
RsaNI GTAC 1 cut(s) 163
RseI CAYNNNNRTG 2 cut(s) 205, 483
SalI GTCGAC 1 cut(s) 683
SaqAI TTAA 4 cut(s) 72, 117, 698, 708
SatI GCNGC 3 cut(s) 448, 510, 652
Sau3AI GATC 6 cut(s) 32, 42, 187, 235, 290, 565
SchI GAGTC 2 cut(s) 367, 603
ScrFI CCNGG 2 cut(s) 288, 562
SduI GDGCHC 1 cut(s) 480
SfaNI GCATC 4 cut(s) 86, 233, 516, 521
SfcI CTRYAG 2 cut(s) 390, 582
SgrDI CGTCGACG 1 cut(s) 683
SmiMI CAYNNNNRTG 2 cut(s) 205, 483
SmlI CTYRAG 1 cut(s) 396
SmoI CTYRAG 1 cut(s) 396
SphI GCATGC 1 cut(s) 210
Sse9I AATT 4 cut(s) 132, 212, 250, 710
SsiI CCGC 4 cut(s) 497, 537, 577, 652
StyD4I CCNGG 2 cut(s) 286, 560
TaaI ACNGT 2 cut(s) 7, 436
TaiI ACGT 1 cut(s) 690
TaqI TCGA 1 cut(s) 684
TaqII GACCGA 1 cut(s) 480
TasI AATT 4 cut(s) 132, 212, 250, 710
TauI GCSGC 1 cut(s) 654
TfiI GAWTC 2 cut(s) 334, 468
Tru1I TTAA 4 cut(s) 72, 117, 698, 708
Tru9I TTAA 4 cut(s) 72, 117, 698, 708
TseFI GTSAC 1 cut(s) 407
TseI GCWGC 2 cut(s) 447, 509
Tsp45I GTSAC 1 cut(s) 407
TspDTI ATGAA 2 cut(s) 85, 707
TspGWI ACGGA 2 cut(s) 569, 587
VneI GTGCAC 1 cut(s) 476
XapI RAATTY 1 cut(s) 250
XceI RCATGY 2 cut(s) 206, 210
XmiI GTMKAC 1 cut(s) 684
XmnI GAANNNNTTC 1 cut(s) 92
ZraI GACGTC 1 cut(s) 688
Zsp2I ATGCAT 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.