Prupe.4G227600_v2.0.a1

metal ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000343
Physical Location & Seq
Reverse (-)
14510804 .. 14512107
1304 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G227600.1

Sequence Viewer

Length: 480 bp
ATGATGAGATTGATTTTGAAGACGAGTTTGATTCTGTTTGTGCTCTTTGTGATGATGGTGGCGAGCTTTTGTGATAAGGAAACTATGTGTGAATCTCTTGGCTTTACCCAGGCGGAAGTAGATGCGATGCAATTTGTCTTCTGCAAGAACTGTGAAGATAGACAGCATCAGTGCTTCGCTTGCGGGAAGCTAGGATCCTCGGATAGATCTTCAGGTGCTGAGGTCTTCGCTTGTATTTCTGTAGCCTGTGGTAAATTTTACCATCCACATTGTGTTGCACACCTCATTGATCAAGACAATGGAGTTACTGCTGAGGAGCTTGAGAAAAAAATTTCTAAAGGGGAACCCTTTACATGTCCAATTCATAAATGCTGCGTTTGTAAACAAGGAGAGAATAAGAAAGATCCCGAGATGCATTTTGCAGCGTCTAGTCGTTTTCCAAAATCCTACCATAGGAAATGCCTGCCATGGCACTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006950 GO:0006952 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009791 GO:0009889 GO:0009893 GO:0009909 GO:0009911 GO:0009987 GO:0010228 GO:0010468 GO:0010556 GO:0010604 GO:0010638 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030154 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031326 GO:0031399 GO:0031401 GO:0031440 GO:0031935 GO:0031937 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0033043 GO:0033044 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043954 GO:0044030 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048468 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050684 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051052 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051276 GO:0051570 GO:0051574 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060968 GO:0061085 GO:0061087 GO:0061458 GO:0065007 GO:0070827 GO:0070828 GO:0070829 GO:0071840 GO:0080090 GO:0090436 GO:0097159 GO:0098542 GO:0099402 GO:0140110 GO:1900109 GO:1900111 GO:1900363 GO:1901363 GO:1902275 GO:1903311 GO:1903506 GO:1905269 GO:2000024 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNMT1-RFD

Protein Analysis

160

Amino Acids

17.93

Weight (kDa)

7.5

Isoelectric Point (pI)

44.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000343)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48090 AT5G48090 AT5G48090 AT5G55390 AT5G55390 AT5G55390
fragaria_vesca FvH4_3g23690 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160
malus_domestica MD03G1191000.v1.1 MD11G1207800.v1.1 MD11G1208000.v1.1
prunus_persica Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227600_v2.0.a1 Prupe.4G227700_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1
pyrus_communis pycom01g03400 pycom03g14420 pycom11g18100 pycom11g18140 pycom11g18150 pycom11g18160
rosa_chinensis RchiOBHm_Chr2g0145981 RchiOBHm_Chr4g0405241 RchiOBHm_Chr4g0405271 RchiOBHm_Chr5g0016201 RchiOBHm_Chr5g0041831 RchiOBHm_Chr5g0041871 RchiOBHm_Chr5g0041881 RchiOBHm_Chr5g0059241
rosa_laevigata RLG00000002117 RLG00000008861 RLG00000008862 RLG00000011000 RLG00000033216 RLG00000034097 RLG00000034101
rosa_multiflora Rmu_sc0000161.1_g000001 Rmu_sc0000861.1_g000040 Rmu_sc0007522.1_g000003 Rmu_sc0009443.1_g000015 Rmu_sc0022129.1_g000001 Rmu_sc0042315.1_g000001
rosa_roxburghii Rroxscaffold_1G00038660 Rroxscaffold_1G00038690 Rroxscaffold_5G00349560 Rroxscaffold_5G00349610 Rroxscaffold_6G00388370 Rroxscaffold_7G00188740
rosa_rugosa Rorug03G0199700 Rorug04G0055400 Rorug04G0055500 Rorug04G0055900 Rorug04G0056000 Rorug04G0056100 Rorug04G0056100 Rorug04G0056200 Rorug05G0195600 Rorug05G0195700 Rorug05G0195800 Rorug05G0195900 Rorug05G0196800 Rorug05G0385000
rosa_samantha Rh4AG129900 Rh4AG130100 Rh4BG124200 Rh4BG124400 Rh4BG124500 Rh4CG137200 Rh4CG137300 Rh4DG123500 Rh4DG123700 Rh5AG280800 Rh5AG281400 Rh5BG286700 Rh5BG287000 Rh5BG397800 Rh5CG318100 Rh5CG318600 Rh5CG421600 Rh5DG132300 Rh5DG132400 Rh5DG295400 Rh5DG295700 Rh7BG475300
rosa_wichuraiana Rw0G001330 Rw0G005730 Rw4G008670 Rw4G010510 Rw4G010540 Rw5G026450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 113, 183
AclWI GGATC 3 cut(s) 189, 202, 398
AcsI RAATTY 2 cut(s) 254, 330
AcuI CTGAAG 1 cut(s) 195
AdeI CACNNNGTG 1 cut(s) 272
AfiI CCNNNNNNNGG 1 cut(s) 453
AflIII ACRYGT 1 cut(s) 353
AgsI TTSAA 1 cut(s) 19
AjnI CCWGG 1 cut(s) 108
AluBI AGCT 3 cut(s) 66, 190, 319
AluI AGCT 3 cut(s) 66, 190, 319
Alw21I GWGCWC 1 cut(s) 45
AlwI GGATC 3 cut(s) 189, 202, 398
AlwNI CAGNNNCTG 1 cut(s) 218
Ama87I CYCGRG 1 cut(s) 407
ApeKI GCWGC 2 cut(s) 372, 422
ApoI RAATTY 2 cut(s) 254, 330
AvaI CYCGRG 1 cut(s) 407
BamHI GGATCC 1 cut(s) 194
BbsI GAAGAC 3 cut(s) 26, 130, 217
Bbv12I GWGCWC 1 cut(s) 45
BbvCI CCTCAGC 2 cut(s) 219, 312
BbvI GCAGC 2 cut(s) 359, 434
BccI CCATC 2 cut(s) 49, 270
BciT130I CCWGG 1 cut(s) 110
BclI TGATCA 1 cut(s) 289
BfaI CTAG 2 cut(s) 191, 429
BfmI CTRYAG 1 cut(s) 240
BglII AGATCT 1 cut(s) 206
BisI GCNGC 2 cut(s) 373, 423
BlsI GCNGC 2 cut(s) 374, 424
Bme1390I CCNGG 1 cut(s) 110
BmeT110I CYCGRG 1 cut(s) 407
BmiI GGNNCC 2 cut(s) 196, 345
BmrFI CCNGG 1 cut(s) 110
BmsI GCATC 4 cut(s) 112, 117, 175, 402
BpiI GAAGAC 3 cut(s) 26, 130, 217
Bpu10I CCTNAGC 2 cut(s) 219, 312
BpuEI CTTGAG 1 cut(s) 341
BsaJI CCNNGG 3 cut(s) 108, 198, 467
Bsc4I CCNNNNNNNGG 1 cut(s) 453
BseBI CCWGG 1 cut(s) 110
BseDI CCNNGG 3 cut(s) 108, 198, 467
BseGI GGATG 1 cut(s) 262
BseLI CCNNNNNNNGG 1 cut(s) 453
BseMII CTCAG 2 cut(s) 210, 303
BseRI GAGGAG 1 cut(s) 329
BseXI GCAGC 2 cut(s) 359, 434
BsiHKAI GWGCWC 1 cut(s) 45
BsiHKCI CYCGRG 1 cut(s) 407
BslI CCNNNNNNNGG 1 cut(s) 453
BsoBI CYCGRG 1 cut(s) 407
Bsp1286I GDGCHC 1 cut(s) 45
Bsp143I GATC 4 cut(s) 194, 206, 289, 403
Bsp19I CCATGG 1 cut(s) 467
BspACI CCGC 2 cut(s) 113, 183
BspCNI CTCAG 2 cut(s) 211, 304
BspLI GGNNCC 2 cut(s) 196, 345
BspPI GGATC 3 cut(s) 189, 202, 398
BssECI CCNNGG 3 cut(s) 108, 198, 467
BssMI GATC 4 cut(s) 194, 206, 289, 403
BssT1I CCWWGG 1 cut(s) 467
Bst2UI CCWGG 1 cut(s) 110
Bst4CI ACNGT 1 cut(s) 152
BstC8I GCNNGC 3 cut(s) 64, 181, 464
BstDEI CTNAG 2 cut(s) 219, 312
BstDSI CCRYGG 1 cut(s) 467
BstENI CCTNNNNNAGG 1 cut(s) 451
BstF5I GGATG 1 cut(s) 262
BstKTI GATC 4 cut(s) 197, 209, 292, 406
BstMBI GATC 4 cut(s) 194, 206, 289, 403
BstMWI GCNNNNNNNGC 1 cut(s) 180
BstNI CCWGG 1 cut(s) 110
BstNSI RCATGY 1 cut(s) 357
BstSCI CCNGG 1 cut(s) 108
BstSFI CTRYAG 1 cut(s) 240
BstV1I GCAGC 2 cut(s) 359, 434
BstV2I GAAGAC 3 cut(s) 26, 130, 217
BstX2I RGATCY 3 cut(s) 194, 206, 403
BstYI RGATCY 3 cut(s) 194, 206, 403
BtgI CCRYGG 1 cut(s) 467
BtgZI GCGATG 1 cut(s) 140
BtsCI GGATG 1 cut(s) 262
BtsIMutI CAGTG 1 cut(s) 176
Cac8I GCNNGC 3 cut(s) 64, 181, 464
CaiI CAGNNNCTG 1 cut(s) 218
CseI GACGC 1 cut(s) 414
CviAII CATG 2 cut(s) 354, 468
CviJI RGCY 5 cut(s) 66, 102, 190, 245, 319
CviKI_1 RGCY 5 cut(s) 66, 102, 190, 245, 319
DdeI CTNAG 2 cut(s) 219, 312
DpnI GATC 4 cut(s) 196, 208, 291, 405
DpnII GATC 4 cut(s) 194, 206, 289, 403
DraIII CACNNNGTG 1 cut(s) 272
EciI GGCGGA 1 cut(s) 128
Eco130I CCWWGG 1 cut(s) 467
Eco57I CTGAAG 1 cut(s) 195
Eco88I CYCGRG 1 cut(s) 407
EcoNI CCTNNNNNAGG 1 cut(s) 451
EcoRII CCWGG 1 cut(s) 108
EcoT14I CCWWGG 1 cut(s) 467
EcoT22I ATGCAT 1 cut(s) 417
ErhI CCWWGG 1 cut(s) 467
FaeI CATG 2 cut(s) 357, 471
FaiI YATR 5 cut(s) 86, 355, 366, 453, 469
FatI CATG 2 cut(s) 353, 467
FauI CCCGC 1 cut(s) 176
FbaI TGATCA 1 cut(s) 289
Fnu4HI GCNGC 2 cut(s) 373, 423
FokI GGATG 1 cut(s) 249
Fsp4HI GCNGC 2 cut(s) 373, 423
FspBI CTAG 2 cut(s) 191, 429
GluI GCNGC 2 cut(s) 373, 423
HgaI GACGC 1 cut(s) 414
Hin1II CATG 2 cut(s) 357, 471
HinfI GANTC 2 cut(s) 31, 92
Hpy166II GTNNAC 1 cut(s) 383
Hpy188I TCNGA 1 cut(s) 202
Hpy188III TCNNGA 2 cut(s) 293, 407
Hpy8I GTNNAC 1 cut(s) 383
HpyCH4III ACNGT 1 cut(s) 152
HpyCH4V TGCA 5 cut(s) 130, 144, 278, 415, 422
HpyF10VI GCNNNNNNNGC 1 cut(s) 180
HpyF3I CTNAG 2 cut(s) 219, 312
Hsp92II CATG 2 cut(s) 357, 471
Ksp22I TGATCA 1 cut(s) 289
Kzo9I GATC 4 cut(s) 194, 206, 289, 403
LmnI GCTCC 1 cut(s) 316
LpnPI CCDG 5 cut(s) 95, 122, 198, 259, 476
Lsp1109I GCAGC 2 cut(s) 359, 434
LweI GCATC 4 cut(s) 112, 117, 175, 402
MaeI CTAG 2 cut(s) 191, 429
MaeIII GTNAC 1 cut(s) 304
MalI GATC 4 cut(s) 196, 208, 291, 405
MboI GATC 4 cut(s) 194, 206, 289, 403
MboII GAAGA 5 cut(s) 31, 130, 167, 201, 217
MflI RGATCY 3 cut(s) 194, 206, 403
MhlI GDGCHC 1 cut(s) 45
MluCI AATT 4 cut(s) 131, 254, 330, 360
MnlI CCTC 4 cut(s) 208, 214, 293, 307
Mph1103I ATGCAT 1 cut(s) 417
MseI TTAA 1 cut(s) 478
MspR9I CCNGG 1 cut(s) 110
MvaI CCWGG 1 cut(s) 110
MwoI GCNNNNNNNGC 1 cut(s) 180
NcoI CCATGG 1 cut(s) 467
NdeII GATC 4 cut(s) 194, 206, 289, 403
NlaIII CATG 2 cut(s) 357, 471
NlaIV GGNNCC 2 cut(s) 196, 345
NsiI ATGCAT 1 cut(s) 417
NspI RCATGY 1 cut(s) 357
PciI ACATGT 1 cut(s) 353
PfeI GAWTC 2 cut(s) 31, 92
PkrI GCNGC 2 cut(s) 374, 424
PscI ACATGT 1 cut(s) 353
Psp6I CCWGG 1 cut(s) 108
PspGI CCWGG 1 cut(s) 108
PspN4I GGNNCC 2 cut(s) 196, 345
PstNI CAGNNNCTG 1 cut(s) 218
PsuI RGATCY 3 cut(s) 194, 206, 403
SaqAI TTAA 1 cut(s) 478
SatI GCNGC 2 cut(s) 373, 423
Sau3AI GATC 4 cut(s) 194, 206, 289, 403
ScrFI CCNGG 1 cut(s) 110
SduI GDGCHC 1 cut(s) 45
SetI ASST 6 cut(s) 68, 192, 217, 225, 285, 321
SfaNI GCATC 4 cut(s) 112, 117, 175, 402
SfcI CTRYAG 1 cut(s) 240
SmlI CTYRAG 1 cut(s) 320
SmoI CTYRAG 1 cut(s) 320
Sse9I AATT 4 cut(s) 131, 254, 330, 360
SsiI CCGC 2 cut(s) 113, 183
SspMI CTAG 2 cut(s) 191, 429
StyD4I CCNGG 1 cut(s) 108
StyI CCWWGG 1 cut(s) 467
TaaI ACNGT 1 cut(s) 152
TasI AATT 4 cut(s) 131, 254, 330, 360
TfiI GAWTC 2 cut(s) 31, 92
Tru1I TTAA 1 cut(s) 478
Tru9I TTAA 1 cut(s) 478
TscAI CASTG 1 cut(s) 176
TseI GCWGC 2 cut(s) 372, 422
TspDTI ATGAA 1 cut(s) 353
TspRI CASTG 1 cut(s) 176
XagI CCTNNNNNAGG 1 cut(s) 451
XapI RAATTY 2 cut(s) 254, 330
XceI RCATGY 1 cut(s) 357
XspI CTAG 2 cut(s) 191, 429
Zsp2I ATGCAT 1 cut(s) 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.