Rorug04G0056100

metal ion binding

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
8834784 .. 8836720
1937 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0056100.1

Sequence Viewer

Length: 387 bp
ATGCAAAAGATGTTAGCTTTGAACCTCGCTGCAAACCTCTCCAAATCTCTTCTATTCAAAAGAATATCCGATCATACTAGAGTGTTTGTCACTTCGGCCACAAGACCTTTGCAATCGAAGAAGGAGGACGATGCATCTGACAAGACAAAAGAAGCAGCAGATGCAGTTAAAGATGGAGCTAAAGAAGTGAGACAGACTTGCGAATTCATGAGGGACACCGTAGAAACCACTGCCAAAACCATGGGCAAAGCGACCAAGGAGGCGACGGAGAAAGTAACGGAAACAGCAGAAACCATCACAGAGAAAACAAAGGGCACCGTTTCAGGTGCATGGGGGATGGCCAAGAATACTACTGAGATTATCAAGGACAAAGTAATGGGCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

128

Amino Acids

14.03

Weight (kDa)

9.33

Isoelectric Point (pI)

18.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000343)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48090 AT5G48090 AT5G48090 AT5G55390 AT5G55390 AT5G55390
fragaria_vesca FvH4_3g23690 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160
malus_domestica MD03G1191000.v1.1 MD11G1207800.v1.1 MD11G1208000.v1.1
prunus_persica Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227600_v2.0.a1 Prupe.4G227700_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1
pyrus_communis pycom01g03400 pycom03g14420 pycom11g18100 pycom11g18140 pycom11g18150 pycom11g18160
rosa_chinensis RchiOBHm_Chr2g0145981 RchiOBHm_Chr4g0405241 RchiOBHm_Chr4g0405271 RchiOBHm_Chr5g0016201 RchiOBHm_Chr5g0041831 RchiOBHm_Chr5g0041871 RchiOBHm_Chr5g0041881 RchiOBHm_Chr5g0059241
rosa_laevigata RLG00000002117 RLG00000008861 RLG00000008862 RLG00000011000 RLG00000033216 RLG00000034097 RLG00000034101
rosa_multiflora Rmu_sc0000161.1_g000001 Rmu_sc0000861.1_g000040 Rmu_sc0007522.1_g000003 Rmu_sc0009443.1_g000015 Rmu_sc0022129.1_g000001 Rmu_sc0042315.1_g000001
rosa_roxburghii Rroxscaffold_1G00038660 Rroxscaffold_1G00038690 Rroxscaffold_5G00349560 Rroxscaffold_5G00349610 Rroxscaffold_6G00388370 Rroxscaffold_7G00188740
rosa_rugosa Rorug03G0199700 Rorug04G0055400 Rorug04G0055500 Rorug04G0055900 Rorug04G0056000 Rorug04G0056100 Rorug04G0056100 Rorug04G0056200 Rorug05G0195600 Rorug05G0195700 Rorug05G0195800 Rorug05G0195900 Rorug05G0196800 Rorug05G0385000
rosa_samantha Rh4AG129900 Rh4AG130100 Rh4BG124200 Rh4BG124400 Rh4BG124500 Rh4CG137200 Rh4CG137300 Rh4DG123500 Rh4DG123700 Rh5AG280800 Rh5AG281400 Rh5BG286700 Rh5BG287000 Rh5BG397800 Rh5CG318100 Rh5CG318600 Rh5CG421600 Rh5DG132300 Rh5DG132400 Rh5DG295400 Rh5DG295700 Rh7BG475300
rosa_wichuraiana Rw0G001330 Rw0G005730 Rw4G008670 Rw4G010510 Rw4G010540 Rw5G026450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 314
AcoI YGGCCR 2 cut(s) 96, 339
AcsI RAATTY 1 cut(s) 203
AgsI TTSAA 2 cut(s) 22, 58
AluBI AGCT 2 cut(s) 17, 179
AluI AGCT 2 cut(s) 17, 179
Alw26I GTCTC 1 cut(s) 184
AoxI GGCC 2 cut(s) 96, 339
ApeKI GCWGC 2 cut(s) 29, 155
ApoI RAATTY 1 cut(s) 203
BaeGI GKGCMC 1 cut(s) 317
BalI TGGCCA 1 cut(s) 341
BanI GGYRCC 1 cut(s) 314
BbvI GCAGC 2 cut(s) 16, 167
BccI CCATC 3 cut(s) 167, 302, 331
BcoDI GTCTC 1 cut(s) 184
BfaI CTAG 1 cut(s) 78
BisI GCNGC 2 cut(s) 30, 156
BlsI GCNGC 2 cut(s) 31, 157
BmiI GGNNCC 1 cut(s) 316
BmsI GCATC 3 cut(s) 121, 143, 151
BsaJI CCNNGG 2 cut(s) 240, 255
BseDI CCNNGG 2 cut(s) 240, 255
BseGI GGATG 1 cut(s) 342
BseMII CTCAG 1 cut(s) 345
BseSI GKGCMC 1 cut(s) 317
BseXI GCAGC 2 cut(s) 16, 167
BshFI GGCC 2 cut(s) 98, 341
BshNI GGYRCC 1 cut(s) 314
BslFI GGGAC 1 cut(s) 227
BsmAI GTCTC 1 cut(s) 184
BsmFI GGGAC 1 cut(s) 227
BsnI GGCC 2 cut(s) 98, 341
Bsp1286I GDGCHC 1 cut(s) 317
Bsp143I GATC 1 cut(s) 70
Bsp19I CCATGG 1 cut(s) 240
BspANI GGCC 2 cut(s) 98, 341
BspCNI CTCAG 1 cut(s) 346
BspHI TCATGA 1 cut(s) 207
BspLI GGNNCC 1 cut(s) 316
BspT107I GGYRCC 1 cut(s) 314
BssECI CCNNGG 2 cut(s) 240, 255
BssMI GATC 1 cut(s) 70
BssT1I CCWWGG 2 cut(s) 240, 255
Bst4CI ACNGT 2 cut(s) 220, 319
Bst6I CTCTTC 1 cut(s) 54
BstAPI GCANNNNNTGC 1 cut(s) 161
BstDEI CTNAG 1 cut(s) 354
BstDSI CCRYGG 1 cut(s) 240
BstF5I GGATG 1 cut(s) 342
BstKTI GATC 1 cut(s) 73
BstMAI GTCTC 1 cut(s) 184
BstMBI GATC 1 cut(s) 70
BstMWI GCNNNNNNNGC 1 cut(s) 161
BstSLI GKGCMC 1 cut(s) 317
BstV1I GCAGC 2 cut(s) 16, 167
BstXI CCANNNNNNTGG 1 cut(s) 241
BsuRI GGCC 2 cut(s) 98, 341
BtgI CCRYGG 1 cut(s) 240
BtsCI GGATG 1 cut(s) 342
BtsI GCAGTG 1 cut(s) 228
BtsIMutI CAGTG 1 cut(s) 228
CciI TCATGA 1 cut(s) 207
CviAII CATG 3 cut(s) 208, 241, 330
CviJI RGCY 4 cut(s) 17, 98, 179, 341
CviKI_1 RGCY 4 cut(s) 17, 98, 179, 341
DdeI CTNAG 1 cut(s) 354
DpnI GATC 1 cut(s) 72
DpnII GATC 1 cut(s) 70
EaeI YGGCCR 2 cut(s) 96, 339
Eam1104I CTCTTC 1 cut(s) 54
EarI CTCTTC 1 cut(s) 54
Eco130I CCWWGG 2 cut(s) 240, 255
EcoRI GAATTC 1 cut(s) 203
EcoT14I CCWWGG 2 cut(s) 240, 255
EcoT22I ATGCAT 1 cut(s) 136
ErhI CCWWGG 2 cut(s) 240, 255
FaeI CATG 3 cut(s) 211, 244, 333
FaiI YATR 4 cut(s) 75, 209, 242, 331
FaqI GGGAC 1 cut(s) 227
FatI CATG 3 cut(s) 207, 240, 329
Fnu4HI GCNGC 2 cut(s) 30, 156
FokI GGATG 1 cut(s) 349
Fsp4HI GCNGC 2 cut(s) 30, 156
FspBI CTAG 1 cut(s) 78
GluI GCNGC 2 cut(s) 30, 156
HaeIII GGCC 2 cut(s) 98, 341
Hin1II CATG 3 cut(s) 211, 244, 333
Hpy188I TCNGA 2 cut(s) 70, 139
Hpy188III TCNNGA 1 cut(s) 208
Hpy99I CGWCG 1 cut(s) 268
HpyAV CCTTC 1 cut(s) 115
HpyCH4III ACNGT 2 cut(s) 220, 319
HpyCH4V TGCA 6 cut(s) 4, 32, 112, 134, 164, 329
HpyF10VI GCNNNNNNNGC 1 cut(s) 161
HpyF3I CTNAG 1 cut(s) 354
Hsp92II CATG 3 cut(s) 211, 244, 333
Kzo9I GATC 1 cut(s) 70
LmnI GCTCC 1 cut(s) 176
LpnPI CCDG 1 cut(s) 309
Lsp1109I GCAGC 2 cut(s) 16, 167
LweI GCATC 3 cut(s) 121, 143, 151
MaeI CTAG 1 cut(s) 78
MaeIII GTNAC 2 cut(s) 88, 274
MalI GATC 1 cut(s) 72
MboI GATC 1 cut(s) 70
MboII GAAGA 2 cut(s) 41, 130
MhlI GDGCHC 1 cut(s) 317
MlsI TGGCCA 1 cut(s) 341
MluCI AATT 1 cut(s) 203
MluNI TGGCCA 1 cut(s) 341
MnlI CCTC 5 cut(s) 35, 47, 118, 204, 253
Mox20I TGGCCA 1 cut(s) 341
Mph1103I ATGCAT 1 cut(s) 136
MscI TGGCCA 1 cut(s) 341
MseI TTAA 1 cut(s) 168
Msp20I TGGCCA 1 cut(s) 341
MwoI GCNNNNNNNGC 1 cut(s) 161
NcoI CCATGG 1 cut(s) 240
NdeII GATC 1 cut(s) 70
NlaIII CATG 3 cut(s) 211, 244, 333
NlaIV GGNNCC 1 cut(s) 316
NmuCI GTSAC 1 cut(s) 88
NsiI ATGCAT 1 cut(s) 136
PagI TCATGA 1 cut(s) 207
PkrI GCNGC 2 cut(s) 31, 157
PspN4I GGNNCC 1 cut(s) 316
SaqAI TTAA 1 cut(s) 168
SatI GCNGC 2 cut(s) 30, 156
Sau3AI GATC 1 cut(s) 70
SduI GDGCHC 1 cut(s) 317
SetI ASST 6 cut(s) 19, 27, 39, 109, 181, 328
SfaNI GCATC 3 cut(s) 121, 143, 151
Sse9I AATT 1 cut(s) 203
SspMI CTAG 1 cut(s) 78
StyI CCWWGG 2 cut(s) 240, 255
TaaI ACNGT 2 cut(s) 220, 319
TaqI TCGA 1 cut(s) 116
TasI AATT 1 cut(s) 203
Tru1I TTAA 1 cut(s) 168
Tru9I TTAA 1 cut(s) 168
TscAI CASTG 1 cut(s) 235
TseFI GTSAC 1 cut(s) 88
TseI GCWGC 2 cut(s) 29, 155
Tsp45I GTSAC 1 cut(s) 88
TspDTI ATGAA 1 cut(s) 196
TspGWI ACGGA 2 cut(s) 281, 293
TspRI CASTG 1 cut(s) 235
XapI RAATTY 1 cut(s) 203
XspI CTAG 1 cut(s) 78
Zsp2I ATGCAT 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.