pycom11g18160

metal ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0000343
Physical Location & Seq
Forward (+)
20388155 .. 20388939
785 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g18160.2

Sequence Viewer

Length: 741 bp
ATGCTGATTGATGATGGCATAAAACCCGAGAGTCCTGGGGATGGGAACAACATCATTGATGAGATATGCAAGGAAATTCTGCCACGCATTCAGCCTGCTGAAAAAGGAGATCAGCATTCTGAGCCTGGCAACTCTGGTTCAAGCATGCAGTTCGGAACTACTTATGGTGGGACAAAGTTCAACATTGCTGATGACACAGGTAGAAGGAGATTCTCCATGAGCAGTGATGAGCCTTACTCGAGTCTGACTCATGGATGGTCTACCGGTCCCAATTCTGGTTATAGGGCTACAAACTCGGAGGAACCGTTTGTGGGGCACACAAGAGAGAGATTGGATAGCCTTGGTTGTAAGCCATTTTTGAATGAGGCAGAAGATGCATTTAGGAGGGAGTCTGACGTATGTTCTCAGATTCACCTCTATGGTCAGCAAGATTTTGATTCTTCAAGAAGTAATTATTTGGTGGGTCAGGATTCTGTGAGTGGACAGATTGGATCGTATTCATCTACTGACAGCCATAGTCATCCTGGTCCAGCAGCTGAGTTATCGCACAGAATGAACACATCAGTCATGCAGCGGTATGCACCTCGGTTGGATGAATTGAACCACACGAGGATGGGCCGCTTAGGATCTGAACCTGCTTTAGGATATCAACCGCACATGTCCAGTAGGTGGCTCCATGGGTTTTGCTCCCGGTCCTCACCAAAGCTATTCGAACCAAAATTCAGCAGGTTGGCTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006950 GO:0006952 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009791 GO:0009889 GO:0009893 GO:0009909 GO:0009911 GO:0009987 GO:0010228 GO:0010468 GO:0010556 GO:0010604 GO:0010638 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030154 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031326 GO:0031399 GO:0031401 GO:0031440 GO:0031935 GO:0031937 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0033043 GO:0033044 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043954 GO:0044030 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048468 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050684 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051052 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051276 GO:0051570 GO:0051574 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060968 GO:0061085 GO:0061087 GO:0061458 GO:0065007 GO:0070827 GO:0070828 GO:0070829 GO:0071840 GO:0080090 GO:0090436 GO:0097159 GO:0098542 GO:0099402 GO:0140110 GO:1900109 GO:1900111 GO:1900363 GO:1901363 GO:1902275 GO:1903311 GO:1903506 GO:1905269 GO:2000024 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNMT1-RFD

Protein Analysis

247

Amino Acids

27.21

Weight (kDa)

5.79

Isoelectric Point (pI)

59.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000343)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48090 AT5G48090 AT5G48090 AT5G55390 AT5G55390 AT5G55390
fragaria_vesca FvH4_3g23690 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160
malus_domestica MD03G1191000.v1.1 MD11G1207800.v1.1 MD11G1208000.v1.1
prunus_persica Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227600_v2.0.a1 Prupe.4G227700_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1
pyrus_communis pycom01g03400 pycom03g14420 pycom11g18100 pycom11g18140 pycom11g18150 pycom11g18160
rosa_chinensis RchiOBHm_Chr2g0145981 RchiOBHm_Chr4g0405241 RchiOBHm_Chr4g0405271 RchiOBHm_Chr5g0016201 RchiOBHm_Chr5g0041831 RchiOBHm_Chr5g0041871 RchiOBHm_Chr5g0041881 RchiOBHm_Chr5g0059241
rosa_laevigata RLG00000002117 RLG00000008861 RLG00000008862 RLG00000011000 RLG00000033216 RLG00000034097 RLG00000034101
rosa_multiflora Rmu_sc0000161.1_g000001 Rmu_sc0000861.1_g000040 Rmu_sc0007522.1_g000003 Rmu_sc0009443.1_g000015 Rmu_sc0022129.1_g000001 Rmu_sc0042315.1_g000001
rosa_roxburghii Rroxscaffold_1G00038660 Rroxscaffold_1G00038690 Rroxscaffold_5G00349560 Rroxscaffold_5G00349610 Rroxscaffold_6G00388370 Rroxscaffold_7G00188740
rosa_rugosa Rorug03G0199700 Rorug04G0055400 Rorug04G0055500 Rorug04G0055900 Rorug04G0056000 Rorug04G0056100 Rorug04G0056100 Rorug04G0056200 Rorug05G0195600 Rorug05G0195700 Rorug05G0195800 Rorug05G0195900 Rorug05G0196800 Rorug05G0385000
rosa_samantha Rh4AG129900 Rh4AG130100 Rh4BG124200 Rh4BG124400 Rh4BG124500 Rh4CG137200 Rh4CG137300 Rh4DG123500 Rh4DG123700 Rh5AG280800 Rh5AG281400 Rh5BG286700 Rh5BG287000 Rh5BG397800 Rh5CG318100 Rh5CG318600 Rh5CG421600 Rh5DG132300 Rh5DG132400 Rh5DG295400 Rh5DG295700 Rh7BG475300
rosa_wichuraiana Rw0G001330 Rw0G005730 Rw4G008670 Rw4G010510 Rw4G010540 Rw5G026450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 643, 717
AccB7I CCANNNNNTGG 1 cut(s) 669
AccI GTMKAC 1 cut(s) 260
AciI CCGC 3 cut(s) 574, 619, 653
AclWI GGATC 2 cut(s) 499, 634
AcsI RAATTY 2 cut(s) 75, 719
AfiI CCNNNNNNNGG 5 cut(s) 41, 275, 311, 641, 669
AflIII ACRYGT 1 cut(s) 657
AgeI ACCGGT 1 cut(s) 263
AgsI TTSAA 5 cut(s) 141, 181, 361, 444, 601
AjnI CCWGG 3 cut(s) 34, 124, 523
AluBI AGCT 2 cut(s) 536, 706
AluI AGCT 2 cut(s) 536, 706
AlwI GGATC 2 cut(s) 499, 634
AlwNI CAGNNNCTG 1 cut(s) 536
Ama87I CYCGRG 2 cut(s) 26, 238
AoxI GGCC 1 cut(s) 616
ApeKI GCWGC 3 cut(s) 533, 571, 734
ApoI RAATTY 2 cut(s) 75, 719
AsiGI ACCGGT 1 cut(s) 263
AspS9I GGNCC 4 cut(s) 266, 527, 616, 693
AsuC2I CCSGG 1 cut(s) 691
AsuHPI GGTGA 2 cut(s) 404, 690
AsuII TTCGAA 1 cut(s) 711
AvaI CYCGRG 2 cut(s) 26, 238
AvaII GGWCC 3 cut(s) 266, 527, 693
BaeGI GKGCMC 1 cut(s) 318
BauI CACGAG 1 cut(s) 607
BbvI GCAGC 3 cut(s) 545, 583, 721
BccI CCATC 4 cut(s) 8, 35, 249, 607
BcgI CGANNNNNNTGC 2 cut(s) 133, 167
BciT130I CCWGG 3 cut(s) 36, 126, 525
BcnI CCSGG 1 cut(s) 691
BfuAI ACCTGC 2 cut(s) 643, 717
BisI GCNGC 4 cut(s) 534, 572, 619, 735
BlsI GCNGC 4 cut(s) 535, 573, 620, 736
Bme1390I CCNGG 4 cut(s) 36, 126, 525, 691
Bme18I GGWCC 3 cut(s) 266, 527, 693
BmeT110I CYCGRG 2 cut(s) 26, 238
BmgT120I GGNCC 4 cut(s) 266, 527, 616, 693
BmiI GGNNCC 3 cut(s) 268, 303, 674
BmrFI CCNGG 4 cut(s) 36, 126, 525, 691
BmsI GCATC 1 cut(s) 364
BplI GAGNNNNNCTC 4 cut(s) 221, 253, 232, 264
Bpu10I CCTNAGC 1 cut(s) 622
Bpu14I TTCGAA 1 cut(s) 711
BpuMI CCSGG 1 cut(s) 691
BsaJI CCNNGG 4 cut(s) 35, 340, 584, 676
BsaWI WCCGGW 1 cut(s) 263
BsaXI ACNNNNNCTCC 2 cut(s) 290, 320
Bsc4I CCNNNNNNNGG 5 cut(s) 41, 275, 311, 641, 669
Bse118I RCCGGY 1 cut(s) 263
Bse1I ACTGG 1 cut(s) 663
Bse3DI GCAATG 1 cut(s) 183
BseBI CCWGG 3 cut(s) 36, 126, 525
BseDI CCNNGG 4 cut(s) 35, 340, 584, 676
BseGI GGATG 5 cut(s) 46, 260, 520, 598, 618
BseLI CCNNNNNNNGG 5 cut(s) 41, 275, 311, 641, 669
BseMI GCAATG 1 cut(s) 183
BseMII CTCAG 3 cut(s) 111, 419, 528
BseNI ACTGG 1 cut(s) 663
BseSI GKGCMC 1 cut(s) 318
BseXI GCAGC 3 cut(s) 545, 583, 721
BshFI GGCC 1 cut(s) 618
BshTI ACCGGT 1 cut(s) 263
BsiHKCI CYCGRG 2 cut(s) 26, 238
BsiSI CCGG 2 cut(s) 264, 691
BslFI GGGAC 2 cut(s) 184, 252
BslI CCNNNNNNNGG 5 cut(s) 41, 275, 311, 641, 669
BsmFI GGGAC 2 cut(s) 184, 252
BsmI GAATGC 2 cut(s) 87, 115
BsnI GGCC 1 cut(s) 618
BsoBI CYCGRG 2 cut(s) 26, 238
Bsp119I TTCGAA 1 cut(s) 711
Bsp1286I GDGCHC 1 cut(s) 318
Bsp143I GATC 3 cut(s) 109, 491, 626
Bsp19I CCATGG 1 cut(s) 676
BspACI CCGC 3 cut(s) 574, 619, 653
BspANI GGCC 1 cut(s) 618
BspCNI CTCAG 3 cut(s) 112, 418, 529
BspLI GGNNCC 3 cut(s) 268, 303, 674
BspMI ACCTGC 2 cut(s) 643, 717
BspPI GGATC 2 cut(s) 499, 634
BspT104I TTCGAA 1 cut(s) 711
BsrDI GCAATG 1 cut(s) 183
BsrFI RCCGGY 1 cut(s) 263
BsrI ACTGG 1 cut(s) 663
BssAI RCCGGY 1 cut(s) 263
BssECI CCNNGG 4 cut(s) 35, 340, 584, 676
BssMI GATC 3 cut(s) 109, 491, 626
BssSI CACGAG 1 cut(s) 607
BssT1I CCWWGG 2 cut(s) 340, 676
Bst2BI CACGAG 1 cut(s) 607
Bst2UI CCWGG 3 cut(s) 36, 126, 525
Bst4CI ACNGT 1 cut(s) 306
BstAPI GCANNNNNTGC 1 cut(s) 374
BstBI TTCGAA 1 cut(s) 711
BstC8I GCNNGC 2 cut(s) 96, 146
BstDEI CTNAG 4 cut(s) 120, 405, 537, 622
BstDSI CCRYGG 1 cut(s) 676
BstENI CCTNNNNNAGG 1 cut(s) 639
BstF5I GGATG 5 cut(s) 46, 260, 520, 598, 618
BstKTI GATC 3 cut(s) 112, 494, 629
BstMBI GATC 3 cut(s) 109, 491, 626
BstMWI GCNNNNNNNGC 2 cut(s) 121, 374
BstNI CCWGG 3 cut(s) 36, 126, 525
BstNSI RCATGY 2 cut(s) 148, 661
BstSCI CCNGG 4 cut(s) 34, 124, 523, 689
BstSLI GKGCMC 1 cut(s) 318
BstV1I GCAGC 3 cut(s) 545, 583, 721
BstX2I RGATCY 1 cut(s) 626
BstYI RGATCY 1 cut(s) 626
BsuRI GGCC 1 cut(s) 618
BtgI CCRYGG 1 cut(s) 676
BtsCI GGATG 5 cut(s) 46, 260, 520, 598, 618
BtsI GCAGTG 1 cut(s) 229
BtsIMutI CAGTG 1 cut(s) 229
BveI ACCTGC 2 cut(s) 643, 717
Cac8I GCNNGC 2 cut(s) 96, 146
CaiI CAGNNNCTG 1 cut(s) 536
Cfr10I RCCGGY 1 cut(s) 263
Cfr13I GGNCC 4 cut(s) 266, 527, 616, 693
CspAI ACCGGT 1 cut(s) 263
CviAII CATG 7 cut(s) 145, 217, 251, 568, 658, 677, 738
DdeI CTNAG 4 cut(s) 120, 405, 537, 622
DpnI GATC 3 cut(s) 111, 493, 628
DpnII GATC 3 cut(s) 109, 491, 626
Eco130I CCWWGG 2 cut(s) 340, 676
Eco32I GATATC 1 cut(s) 647
Eco47I GGWCC 3 cut(s) 266, 527, 693
Eco88I CYCGRG 2 cut(s) 26, 238
EcoNI CCTNNNNNAGG 1 cut(s) 639
EcoRII CCWGG 3 cut(s) 34, 124, 523
EcoRV GATATC 1 cut(s) 647
EcoT14I CCWWGG 2 cut(s) 340, 676
EcoT22I ATGCAT 1 cut(s) 379
ErhI CCWWGG 2 cut(s) 340, 676
FaeI CATG 7 cut(s) 148, 220, 254, 571, 661, 680, 741
FaqI GGGAC 2 cut(s) 184, 252
FatI CATG 7 cut(s) 144, 216, 250, 567, 657, 676, 737
FblI GTMKAC 1 cut(s) 260
Fnu4HI GCNGC 4 cut(s) 534, 572, 619, 735
FokI GGATG 5 cut(s) 53, 267, 507, 605, 625
Fsp4HI GCNGC 4 cut(s) 534, 572, 619, 735
GluI GCNGC 4 cut(s) 534, 572, 619, 735
HaeIII GGCC 1 cut(s) 618
HapII CCGG 2 cut(s) 264, 691
Hin1II CATG 7 cut(s) 148, 220, 254, 571, 661, 680, 741
HinfI GANTC 8 cut(s) 31, 210, 241, 247, 389, 409, 437, 470
HpaII CCGG 2 cut(s) 264, 691
HphI GGTGA 2 cut(s) 404, 690
Hpy166II GTNNAC 2 cut(s) 261, 482
Hpy188I TCNGA 7 cut(s) 121, 155, 246, 298, 394, 408, 631
Hpy188III TCNNGA 2 cut(s) 444, 467
Hpy8I GTNNAC 2 cut(s) 261, 482
HpyAV CCTTC 1 cut(s) 198
HpyCH4III ACNGT 1 cut(s) 306
HpyCH4IV ACGT 1 cut(s) 396
HpyCH4V TGCA 6 cut(s) 69, 148, 377, 571, 581, 737
HpyF10VI GCNNNNNNNGC 2 cut(s) 121, 374
HpyF3I CTNAG 4 cut(s) 120, 405, 537, 622
HpySE526I ACGT 1 cut(s) 396
Hsp92II CATG 7 cut(s) 148, 220, 254, 571, 661, 680, 741
Kzo9I GATC 3 cut(s) 109, 491, 626
LmnI GCTCC 2 cut(s) 678, 692
Lsp1109I GCAGC 3 cut(s) 545, 583, 721
LweI GCATC 1 cut(s) 364
MaeII ACGT 1 cut(s) 396
MalI GATC 3 cut(s) 111, 493, 628
MboI GATC 3 cut(s) 109, 491, 626
MboII GAAGA 2 cut(s) 383, 432
MflI RGATCY 1 cut(s) 626
MhlI GDGCHC 1 cut(s) 318
MluCI AATT 5 cut(s) 75, 271, 451, 596, 719
MlyI GAGTC 4 cut(s) 40, 241, 250, 398
MmeI TCCRAC 1 cut(s) 570
MnlI CCTC 7 cut(s) 292, 358, 378, 425, 594, 603, 706
Mph1103I ATGCAT 1 cut(s) 379
MslI CAYNNNNRTG 2 cut(s) 417, 611
MspA1I CMGCKG 2 cut(s) 536, 574
MspI CCGG 2 cut(s) 264, 691
MspR9I CCNGG 4 cut(s) 36, 126, 525, 691
Mva1269I GAATGC 2 cut(s) 87, 115
MvaI CCWGG 3 cut(s) 36, 126, 525
MwoI GCNNNNNNNGC 2 cut(s) 121, 374
NciI CCSGG 1 cut(s) 691
NcoI CCATGG 1 cut(s) 676
NdeII GATC 3 cut(s) 109, 491, 626
NlaIII CATG 7 cut(s) 148, 220, 254, 571, 661, 680, 741
NlaIV GGNNCC 3 cut(s) 268, 303, 674
NsiI ATGCAT 1 cut(s) 379
NspI RCATGY 2 cut(s) 148, 661
NspV TTCGAA 1 cut(s) 711
PaeI GCATGC 1 cut(s) 148
PaeR7I CTCGAG 1 cut(s) 238
PciI ACATGT 1 cut(s) 657
PcsI WCGNNNNNNNCGW 1 cut(s) 302
PctI GAATGC 2 cut(s) 87, 115
PfeI GAWTC 4 cut(s) 210, 409, 437, 470
PflMI CCANNNNNTGG 1 cut(s) 669
PinAI ACCGGT 1 cut(s) 263
PkrI GCNGC 4 cut(s) 535, 573, 620, 736
PleI GAGTC 4 cut(s) 39, 241, 249, 397
PpsI GAGTC 4 cut(s) 39, 241, 249, 397
PscI ACATGT 1 cut(s) 657
Psp6I CCWGG 3 cut(s) 34, 124, 523
PspGI CCWGG 3 cut(s) 34, 124, 523
PspN4I GGNNCC 3 cut(s) 268, 303, 674
PspPI GGNCC 4 cut(s) 266, 527, 616, 693
PspXI VCTCGAGB 1 cut(s) 238
PstNI CAGNNNCTG 1 cut(s) 536
PsuI RGATCY 1 cut(s) 626
PvuII CAGCTG 1 cut(s) 536
RseI CAYNNNNRTG 2 cut(s) 417, 611
SatI GCNGC 4 cut(s) 534, 572, 619, 735
Sau3AI GATC 3 cut(s) 109, 491, 626
Sau96I GGNCC 4 cut(s) 266, 527, 616, 693
SchI GAGTC 4 cut(s) 40, 241, 250, 398
ScrFI CCNGG 4 cut(s) 36, 126, 525, 691
SduI GDGCHC 1 cut(s) 318
SetI ASST 9 cut(s) 202, 399, 417, 538, 586, 637, 671, 708, 731
SfaNI GCATC 1 cut(s) 364
Sfr274I CTCGAG 1 cut(s) 238
SfuI TTCGAA 1 cut(s) 711
SinI GGWCC 3 cut(s) 266, 527, 693
SlaI CTCGAG 1 cut(s) 238
SmiMI CAYNNNNRTG 2 cut(s) 417, 611
SmlI CTYRAG 1 cut(s) 238
SmoI CTYRAG 1 cut(s) 238
SphI GCATGC 1 cut(s) 148
Sse9I AATT 5 cut(s) 75, 271, 451, 596, 719
SsiI CCGC 3 cut(s) 574, 619, 653
StyD4I CCNGG 4 cut(s) 34, 124, 523, 689
StyI CCWWGG 2 cut(s) 340, 676
TaaI ACNGT 1 cut(s) 306
TaiI ACGT 1 cut(s) 399
TaqI TCGA 2 cut(s) 239, 711
TasI AATT 5 cut(s) 75, 271, 451, 596, 719
TauI GCSGC 1 cut(s) 621
TfiI GAWTC 4 cut(s) 210, 409, 437, 470
TscAI CASTG 1 cut(s) 229
TseI GCWGC 3 cut(s) 533, 571, 734
TspDTI ATGAA 3 cut(s) 489, 569, 609
TspRI CASTG 1 cut(s) 229
Van91I CCANNNNNTGG 1 cut(s) 669
VpaK11BI GGWCC 3 cut(s) 266, 527, 693
XagI CCTNNNNNAGG 1 cut(s) 639
XapI RAATTY 2 cut(s) 75, 719
XceI RCATGY 2 cut(s) 148, 661
XcmI CCANNNNNNNNNTGG 1 cut(s) 521
XhoI CTCGAG 1 cut(s) 238
XmiI GTMKAC 1 cut(s) 260
Zsp2I ATGCAT 1 cut(s) 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.