RLG00000011000

metal ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000343
Physical Location & Seq
Reverse (-)
5942038 .. 5945090
3053 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011000

Sequence Viewer

Length: 762 bp
ATGGCATCTTTTGATAATGAGGCAGAGCCTCTGCCAGTTACGAATTACTATTTTGAAGATGACAAGAATGAACCTATTTTGTTTCATGTTTTGCCAATTGAATGGAGCAAGGATAAGAGACAGAATGGGAAGAAAGAACTCATATATTTGCGTGGCATTGCAGATAATGGGCTTCAGACCATACATAGAGCTGTTATAGCATGGAAATTTGACCTTTTTAGTGTGAAGCCGGTGATATCGGTGCTCTCCAGGAAAAACAAGTGGATTGTGCTTCAGAGGTTGAGGAAGAGCTTTGAGAAGATAATAAGGCCAATCTTGGTAACGCTCTACTGTCTTAGTTATGTGATTAGAAATCCGGAAACGTCTGCCAAATCTCTGTGGGAGTACTTAGCTAGTGTTTTTAGAGCTCAAATTTTCTTGCTCTTGTTCTTTGCTATTTCGGAGAGAGACCAAGGGAAGGAGCAAAAAATTTCCAATTCCCATTGGATTCCGGAACCGGAGAGCGGCGGCGGCTCGATTCCAGCGAATGTGCTTTGCCGCAACCGTGATATTCAGCGAGTGAATTGTAAGGTTATCTCAATGTCTAAGATCTCACACCAATCAGTGGCTAGACCTACTGGCTTGGCCTCGGTGTCCACTATTCCGGTGTGCAAGGTCAATCAGTTGGTTCAGGTTGCACAGAAGTGCCAGAGTACGATTGCTGAAAGTGGATCTGATGGGGTTTCTCAGCAGAATCTACAAGCAAATAGTAATTGGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006950 GO:0006952 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009791 GO:0009889 GO:0009893 GO:0009909 GO:0009911 GO:0009987 GO:0010228 GO:0010468 GO:0010556 GO:0010604 GO:0010638 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030154 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031326 GO:0031399 GO:0031401 GO:0031440 GO:0031935 GO:0031937 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0033043 GO:0033044 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043954 GO:0044030 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048468 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050684 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051052 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051276 GO:0051570 GO:0051574 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060968 GO:0061085 GO:0061087 GO:0061458 GO:0065007 GO:0070827 GO:0070828 GO:0070829 GO:0071840 GO:0080090 GO:0090436 GO:0097159 GO:0098542 GO:0099402 GO:0140110 GO:1900109 GO:1900111 GO:1900363 GO:1901363 GO:1902275 GO:1903311 GO:1903506 GO:1905269 GO:2000024 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNMT1-RFD

Protein Analysis

254

Amino Acids

28.77

Weight (kDa)

9.36

Isoelectric Point (pI)

39.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000343)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48090 AT5G48090 AT5G48090 AT5G55390 AT5G55390 AT5G55390
fragaria_vesca FvH4_3g23690 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160
malus_domestica MD03G1191000.v1.1 MD11G1207800.v1.1 MD11G1208000.v1.1
prunus_persica Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227600_v2.0.a1 Prupe.4G227700_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1
pyrus_communis pycom01g03400 pycom03g14420 pycom11g18100 pycom11g18140 pycom11g18150 pycom11g18160
rosa_chinensis RchiOBHm_Chr2g0145981 RchiOBHm_Chr4g0405241 RchiOBHm_Chr4g0405271 RchiOBHm_Chr5g0016201 RchiOBHm_Chr5g0041831 RchiOBHm_Chr5g0041871 RchiOBHm_Chr5g0041881 RchiOBHm_Chr5g0059241
rosa_laevigata RLG00000002117 RLG00000008861 RLG00000008862 RLG00000011000 RLG00000033216 RLG00000034097 RLG00000034101
rosa_multiflora Rmu_sc0000161.1_g000001 Rmu_sc0000861.1_g000040 Rmu_sc0007522.1_g000003 Rmu_sc0009443.1_g000015 Rmu_sc0022129.1_g000001 Rmu_sc0042315.1_g000001
rosa_roxburghii Rroxscaffold_1G00038660 Rroxscaffold_1G00038690 Rroxscaffold_5G00349560 Rroxscaffold_5G00349610 Rroxscaffold_6G00388370 Rroxscaffold_7G00188740
rosa_rugosa Rorug03G0199700 Rorug04G0055400 Rorug04G0055500 Rorug04G0055900 Rorug04G0056000 Rorug04G0056100 Rorug04G0056100 Rorug04G0056200 Rorug05G0195600 Rorug05G0195700 Rorug05G0195800 Rorug05G0195900 Rorug05G0196800 Rorug05G0385000
rosa_samantha Rh4AG129900 Rh4AG130100 Rh4BG124200 Rh4BG124400 Rh4BG124500 Rh4CG137200 Rh4CG137300 Rh4DG123500 Rh4DG123700 Rh5AG280800 Rh5AG281400 Rh5BG286700 Rh5BG287000 Rh5BG397800 Rh5CG318100 Rh5CG318600 Rh5CG421600 Rh5DG132300 Rh5DG132400 Rh5DG295400 Rh5DG295700 Rh7BG475300
rosa_wichuraiana Rw0G001330 Rw0G005730 Rw4G008670 Rw4G010510 Rw4G010540 Rw5G026450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 604
AccBSI CCGCTC 1 cut(s) 504
AccIII TCCGGA 2 cut(s) 355, 490
AciI CCGC 4 cut(s) 504, 507, 510, 538
AclWI GGATC 1 cut(s) 718
AcsI RAATTY 3 cut(s) 206, 411, 468
AcuI CTGAAG 2 cut(s) 158, 257
AfaI GTAC 2 cut(s) 386, 694
AfiI CCNNNNNNNGG 3 cut(s) 457, 503, 604
AgsI TTSAA 2 cut(s) 56, 101
AjnI CCWGG 1 cut(s) 248
AleI CACNNNNGTG 1 cut(s) 682
AluBI AGCT 4 cut(s) 191, 291, 392, 407
AluI AGCT 4 cut(s) 191, 291, 392, 407
Alw21I GWGCWC 2 cut(s) 246, 409
Alw26I GTCTC 2 cut(s) 112, 441
AlwI GGATC 1 cut(s) 718
Aor13HI TCCGGA 2 cut(s) 355, 490
AoxI GGCC 2 cut(s) 308, 624
ApoI RAATTY 3 cut(s) 206, 411, 468
AsuHPI GGTGA 1 cut(s) 244
BanII GRGCYC 1 cut(s) 409
Bbv12I GWGCWC 2 cut(s) 246, 409
BccI CCATC 1 cut(s) 710
BciT130I CCWGG 1 cut(s) 250
BcoDI GTCTC 2 cut(s) 112, 441
BfaI CTAG 2 cut(s) 393, 609
BglII AGATCT 1 cut(s) 588
BisI GCNGC 4 cut(s) 505, 508, 511, 538
BlsI GCNGC 4 cut(s) 506, 509, 512, 539
BmcAI AGTACT 1 cut(s) 386
Bme1390I CCNGG 1 cut(s) 250
BmiI GGNNCC 1 cut(s) 495
BmrFI CCNGG 1 cut(s) 250
BmsI GCATC 1 cut(s) 14
BpmI CTGGAG 1 cut(s) 232
BsaI GGTCTC 1 cut(s) 441
BsaJI CCNNGG 2 cut(s) 451, 627
BsaWI WCCGGW 4 cut(s) 355, 490, 496, 643
Bsc4I CCNNNNNNNGG 3 cut(s) 457, 503, 604
Bse118I RCCGGY 1 cut(s) 229
Bse1I ACTGG 2 cut(s) 35, 622
Bse3DI GCAATG 1 cut(s) 156
BseAI TCCGGA 2 cut(s) 355, 490
BseBI CCWGG 1 cut(s) 250
BseDI CCNNGG 2 cut(s) 451, 627
BseLI CCNNNNNNNGG 3 cut(s) 457, 503, 604
BseMI GCAATG 1 cut(s) 156
BseMII CTCAG 1 cut(s) 740
BseNI ACTGG 2 cut(s) 35, 622
BshFI GGCC 2 cut(s) 310, 626
BsiHKAI GWGCWC 2 cut(s) 246, 409
BsiSI CCGG 5 cut(s) 230, 356, 491, 497, 644
BslI CCNNNNNNNGG 3 cut(s) 457, 503, 604
BsmAI GTCTC 2 cut(s) 112, 441
BsnI GGCC 2 cut(s) 310, 626
Bso31I GGTCTC 1 cut(s) 441
Bsp1286I GDGCHC 2 cut(s) 246, 409
Bsp13I TCCGGA 2 cut(s) 355, 490
Bsp143I GATC 2 cut(s) 588, 710
BspACI CCGC 4 cut(s) 504, 507, 510, 538
BspANI GGCC 2 cut(s) 310, 626
BspCNI CTCAG 1 cut(s) 739
BspEI TCCGGA 2 cut(s) 355, 490
BspLI GGNNCC 1 cut(s) 495
BspPI GGATC 1 cut(s) 718
BspQI GCTCTTC 1 cut(s) 281
BspTNI GGTCTC 1 cut(s) 441
BsrBI CCGCTC 1 cut(s) 504
BsrDI GCAATG 1 cut(s) 156
BsrFI RCCGGY 1 cut(s) 229
BsrI ACTGG 2 cut(s) 35, 622
BssAI RCCGGY 1 cut(s) 229
BssECI CCNNGG 2 cut(s) 451, 627
BssMI GATC 2 cut(s) 588, 710
BssT1I CCWWGG 1 cut(s) 451
Bst2UI CCWGG 1 cut(s) 250
Bst4CI ACNGT 2 cut(s) 332, 545
Bst6I CTCTTC 1 cut(s) 281
BstDEI CTNAG 4 cut(s) 335, 388, 585, 726
BstKTI GATC 2 cut(s) 591, 713
BstMAI GTCTC 2 cut(s) 112, 441
BstMBI GATC 2 cut(s) 588, 710
BstMWI GCNNNNNNNGC 2 cut(s) 197, 510
BstNI CCWGG 1 cut(s) 250
BstSCI CCNGG 1 cut(s) 248
BstX2I RGATCY 2 cut(s) 588, 710
BstXI CCANNNNNNTGG 1 cut(s) 102
BstYI RGATCY 2 cut(s) 588, 710
BsuRI GGCC 2 cut(s) 310, 626
BtsIMutI CAGTG 1 cut(s) 609
Cfr10I RCCGGY 1 cut(s) 229
Csp6I GTAC 2 cut(s) 385, 693
CviAII CATG 2 cut(s) 86, 201
CviQI GTAC 2 cut(s) 385, 693
DdeI CTNAG 4 cut(s) 335, 388, 585, 726
DpnI GATC 2 cut(s) 590, 712
DpnII GATC 2 cut(s) 588, 710
Eam1104I CTCTTC 1 cut(s) 281
EarI CTCTTC 1 cut(s) 281
Ecl136II GAGCTC 1 cut(s) 407
Eco130I CCWWGG 1 cut(s) 451
Eco24I GRGCYC 1 cut(s) 409
Eco31I GGTCTC 1 cut(s) 441
Eco32I GATATC 1 cut(s) 237
Eco53kI GAGCTC 1 cut(s) 407
Eco57I CTGAAG 2 cut(s) 158, 257
EcoICRI GAGCTC 1 cut(s) 407
EcoRII CCWGG 1 cut(s) 248
EcoRV GATATC 1 cut(s) 237
EcoT14I CCWWGG 1 cut(s) 451
EcoT38I GRGCYC 1 cut(s) 409
ErhI CCWWGG 1 cut(s) 451
FaeI CATG 2 cut(s) 89, 204
FaiI YATR 8 cut(s) 87, 143, 145, 182, 186, 197, 202, 342
FatI CATG 2 cut(s) 85, 200
Fnu4HI GCNGC 4 cut(s) 505, 508, 511, 538
FriOI GRGCYC 1 cut(s) 409
Fsp4HI GCNGC 4 cut(s) 505, 508, 511, 538
FspBI CTAG 2 cut(s) 393, 609
GluI GCNGC 4 cut(s) 505, 508, 511, 538
GsuI CTGGAG 1 cut(s) 232
HaeIII GGCC 2 cut(s) 310, 626
HapII CCGG 5 cut(s) 230, 356, 491, 497, 644
Hin1II CATG 2 cut(s) 89, 204
HinfI GANTC 3 cut(s) 487, 517, 733
HpaII CCGG 5 cut(s) 230, 356, 491, 497, 644
HphI GGTGA 1 cut(s) 244
Hpy166II GTNNAC 1 cut(s) 636
Hpy188I TCNGA 5 cut(s) 177, 276, 442, 715, 761
Hpy188III TCNNGA 2 cut(s) 356, 491
Hpy8I GTNNAC 1 cut(s) 636
HpyAV CCTTC 1 cut(s) 451
HpyCH4III ACNGT 2 cut(s) 332, 545
HpyCH4IV ACGT 1 cut(s) 362
HpyCH4V TGCA 3 cut(s) 161, 651, 677
HpyF10VI GCNNNNNNNGC 2 cut(s) 197, 510
HpyF3I CTNAG 4 cut(s) 335, 388, 585, 726
HpySE526I ACGT 1 cut(s) 362
Hsp92II CATG 2 cut(s) 89, 204
Kpn2I TCCGGA 2 cut(s) 355, 490
Kzo9I GATC 2 cut(s) 588, 710
LguI GCTCTTC 1 cut(s) 281
LmnI GCTCC 2 cut(s) 105, 460
LweI GCATC 1 cut(s) 14
MaeI CTAG 2 cut(s) 393, 609
MaeII ACGT 1 cut(s) 362
MaeIII GTNAC 2 cut(s) 37, 319
MalI GATC 2 cut(s) 590, 712
MbiI CCGCTC 1 cut(s) 504
MboI GATC 2 cut(s) 588, 710
MboII GAAGA 4 cut(s) 68, 142, 298, 310
MfeI CAATTG 1 cut(s) 96
MflI RGATCY 2 cut(s) 588, 710
MhlI GDGCHC 2 cut(s) 246, 409
MluCI AATT 8 cut(s) 43, 96, 206, 411, 468, 475, 562, 751
MnlI CCTC 5 cut(s) 13, 39, 270, 276, 637
MroI TCCGGA 2 cut(s) 355, 490
MslI CAYNNNNRTG 1 cut(s) 682
MspI CCGG 5 cut(s) 230, 356, 491, 497, 644
MspR9I CCNGG 1 cut(s) 250
MunI CAATTG 1 cut(s) 96
MvaI CCWGG 1 cut(s) 250
MwoI GCNNNNNNNGC 2 cut(s) 197, 510
NdeII GATC 2 cut(s) 588, 710
NlaIII CATG 2 cut(s) 89, 204
NlaIV GGNNCC 1 cut(s) 495
OliI CACNNNNGTG 1 cut(s) 682
PciSI GCTCTTC 1 cut(s) 281
PcsI WCGNNNNNNNCGW 1 cut(s) 521
PfeI GAWTC 3 cut(s) 487, 517, 733
PflMI CCANNNNNTGG 1 cut(s) 604
PfoI TCCNGGA 1 cut(s) 248
PkrI GCNGC 4 cut(s) 506, 509, 512, 539
Psp124BI GAGCTC 1 cut(s) 409
Psp6I CCWGG 1 cut(s) 248
PspGI CCWGG 1 cut(s) 248
PspN4I GGNNCC 1 cut(s) 495
PsuI RGATCY 2 cut(s) 588, 710
RsaI GTAC 2 cut(s) 386, 694
RsaNI GTAC 2 cut(s) 385, 693
RseI CAYNNNNRTG 1 cut(s) 682
SacI GAGCTC 1 cut(s) 409
SapI GCTCTTC 1 cut(s) 281
SatI GCNGC 4 cut(s) 505, 508, 511, 538
Sau3AI GATC 2 cut(s) 588, 710
ScaI AGTACT 1 cut(s) 386
ScrFI CCNGG 1 cut(s) 250
SduI GDGCHC 2 cut(s) 246, 409
SfaNI GCATC 1 cut(s) 14
SmiMI CAYNNNNRTG 1 cut(s) 682
Sse9I AATT 8 cut(s) 43, 96, 206, 411, 468, 475, 562, 751
SsiI CCGC 4 cut(s) 504, 507, 510, 538
SspMI CTAG 2 cut(s) 393, 609
SstI GAGCTC 1 cut(s) 409
StyD4I CCNGG 1 cut(s) 248
StyI CCWWGG 1 cut(s) 451
TaaI ACNGT 2 cut(s) 332, 545
TaiI ACGT 1 cut(s) 365
TaqI TCGA 1 cut(s) 515
TasI AATT 8 cut(s) 43, 96, 206, 411, 468, 475, 562, 751
TatI WGTACW 1 cut(s) 384
TauI GCSGC 4 cut(s) 507, 510, 513, 540
TfiI GAWTC 3 cut(s) 487, 517, 733
TscAI CASTG 1 cut(s) 609
TspDTI ATGAA 2 cut(s) 74, 84
TspRI CASTG 1 cut(s) 609
Van91I CCANNNNNTGG 1 cut(s) 604
XapI RAATTY 3 cut(s) 206, 411, 468
XspI CTAG 2 cut(s) 393, 609
ZrmI AGTACT 1 cut(s) 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.