FvH4_4g08730

metal ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000343
Physical Location & Seq
Forward (+)
9311266 .. 9317288
6023 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g08730.t2

Sequence Viewer

Length: 2568 bp
ATGGCATCCACAGATGAGCCCGACTGTGGACAATATTCTGTTTCGGATTACCATTTAGTAGATGATAAGGCTGAATGTGTGTCATTTCATGTATTACCTGTTCAATGGAGTGACGGTGAGCGACAGGGGGGCGGCGAGGAAGTGAAGATATATCTGCATGGAACTGGTGATAATGGGCTCTCAGAAATATGTAAGCGTGTTATTGCATGGAAGTTTGACATTTCGAGTGAAGTGCCTGAGATACTGGTGCTCTCTGAGGAAAATAGTTGGATCAAGCTTGGGAAGCCGAGGAAGAGCTTTGAGGACACCATTAGGTCAATTTTGATAACGGTGCACTGCATTCACTATGTGATGAGAAATCCTGAAACATCCGGAGATTCTGTGTGGAATCACCTATGTGAAGTTTTCAGATCATATGCGGTCAGGCCTTCTCAAAGTGATCTGGTGGATCACATACCTCTAATCAGTGATTGTGTCAACAGATATCGTGGCCTAGAGGATTCCAAGTTTTTGGCCACCCTTTCTGAAGAGAAGACAATGAAGAGGAAACTCTCTGATGTTGATAGGGAAGCTAGGAAGAAGTTCAAAATTATCATCGATGATATAAAAGATGATAAGATTGATGAAGCAGAAGATGAGGATAACGACAACCTGTTCAGCGAGTTCTGTGCTTTATGCGATGATGGTGGCAAGATCATTTGTTGTGAAGGGGGGTGCCTAAGGTCTTTTCATGCAACTAAGGAGGCGGGTGCGGGATCTTATTGCAAATCTCTTGGCTTTATGCCGGATGACATTATTGGGATGCAAAATTTCTACTGCAAGAACTGTGAACATAAACAGCACCAGTGCTTTATTTGTGGGAAGTTAGGCTCCTCTGATAAGTCCTCAGGTGCTGCTGAGGTTGTTTCCTGTGTATCTCCAAAGTGTGGTCGATTTTACCATCCACATTGTGTTGCAATATTACTTAACCAAGATACTGGAGTTCCTGCTAAAGAACTTGAGAGAAAGATTGCTGGCGGGGAATCTTTTACTTGTCCAATTCATAAGTGCTGCATTTGTAAACAAGGAGAAAATAAGAAGGATATGGAATTTCAGTTTGCTGTGTGCATCCGTTGTCCAAAGTCATATCACAGGAAATGCCTGCCAGGGGAGATTGCTTTTGAAAATCAAGGACAAATGCTAGAAGGGAGATCAATAACAAGAGCTTGGGATGGTCTATTACCTAACCGTATACTCATATACTGCACAAAACATGATATAGATATTGAAAGTGGAACTGTAAGAAGGGACCACATAAAATTCCCTGATGTCAAACAGAATACGAGCACCCTCAAAAAGAAGATTATTTTAGAAGCGAAATGGAAGCCAATATCAGAGTTCCTTGTAGAGGGAGAGAAAGTTGTGTCTAAGAGAAATATTTCCTTGGAAAAATCACATAAGGGAAAAAATGCTGCTACAAAAAAACCATATTTGCAAAAGAAGAAGACTAAGAAATTGATGTCAGGGCAGAAATCTGTGTCTAAGAAGAGCAACTTCTCTCCAGAAGAATCAGTCGGGCAAACAAGTGATCCGGTACTATCAAAACTAGTGAAGCAGAAGCTTTATTCAGTGAAAGAGAAGACTAATATAAAAGAGAAAACTATCGTTGAAGAGAAAGAGGGCCAACTTACATCAATGGTCTCTGTTGACAGAGATAAAGCTGTATCAAAGAGGAAACTGACATCAGAGCTCATTGTAGATGGAGATGAGGGTGTGTCTAAGAAGGGAAGTCCTTTGGAAGAATCATTGAGTGCGACTGCTTCAACTGTACCCAAACCGAAGCGGAAGTTGACTTCTGCTGTGAAATTGGGCAGTAACAGAAATAGGGATGACAAGTCTTCAGTTACAGATATTTCAAGGATGGTGAAACGAAATAATTTACTTAAAAAGGAACTCCAGACTTCCGTGTGTGAGAAAATCATGACCTCACTGGGTGAAATGCCATTTTTTTCAATGGGGTCTGAGCGGGTGAAATTCGGGAACCTTGATACACCTGATGCTACTTCAGTTAGTCAGATACACAAGGAAATGCCACCACGTACAGAATGTGGTGACCATGGAAATCAGCATCCGAACCCCAGCAAGTCTTGTATGTACTGTGCCCATGCTAATGGTCGAATCCATTTGAACATTCCTGATGATGAAGGCAGAAGGTGCACTGAGAGTAATGTTAAGGGGTGCAATAGAGAGAACTCAGGGAAACCATATTTAAATGGGATGAAACAGGAAAAGAAAACAGAATTTGACTTAGTCCCACAGCCAGATCTTCATTTTTCAAGAGGCAGTTATTTAGCGGGTCAAAATTCAGTATATGATGTTAGGGCATTCTCATCTAGTTTTTACAGCCATATAGGCCCTGTTGCTGACTCGTTATTTAGTATGAAAAGTTTAGCTATGCCATCAGATGCAACTATATTGGTTGATCCAACAGCACCCCAACGTGGTTACCTGAATAGGTCTATGGGTTTCGCTCCTGGTCCTCACCTGAACTATTCACTACAGAATTCAGCTGGTTGGATCGATGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006950 GO:0006952 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009791 GO:0009889 GO:0009893 GO:0009909 GO:0009911 GO:0009987 GO:0010228 GO:0010468 GO:0010556 GO:0010604 GO:0010638 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030154 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031326 GO:0031399 GO:0031401 GO:0031440 GO:0031935 GO:0031937 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0033043 GO:0033044 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043954 GO:0044030 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048468 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050684 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051052 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051276 GO:0051570 GO:0051574 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060968 GO:0061085 GO:0061087 GO:0061458 GO:0065007 GO:0070827 GO:0070828 GO:0070829 GO:0071840 GO:0080090 GO:0090436 GO:0097159 GO:0098542 GO:0099402 GO:0140110 GO:1900109 GO:1900111 GO:1900363 GO:1901363 GO:1902275 GO:1903311 GO:1903506 GO:1905269 GO:2000024 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNMT1-RFD

Protein Analysis

856

Amino Acids

95.55

Weight (kDa)

8.27

Isoelectric Point (pI)

43.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DNMT1-RFD PF12047 13 - 137 8.1e-10 Cytosine specific DNA methyltransferase replication foci domain
PHD_NSD PF22908 279 - 348 5e-19 Histone-lysine N-methyltransferase NSD-like, PHD zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000343)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48090 AT5G48090 AT5G48090 AT5G55390 AT5G55390 AT5G55390
fragaria_vesca FvH4_3g23690 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160
malus_domestica MD03G1191000.v1.1 MD11G1207800.v1.1 MD11G1208000.v1.1
prunus_persica Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227600_v2.0.a1 Prupe.4G227700_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1
pyrus_communis pycom01g03400 pycom03g14420 pycom11g18100 pycom11g18140 pycom11g18150 pycom11g18160
rosa_chinensis RchiOBHm_Chr2g0145981 RchiOBHm_Chr4g0405241 RchiOBHm_Chr4g0405271 RchiOBHm_Chr5g0016201 RchiOBHm_Chr5g0041831 RchiOBHm_Chr5g0041871 RchiOBHm_Chr5g0041881 RchiOBHm_Chr5g0059241
rosa_laevigata RLG00000002117 RLG00000008861 RLG00000008862 RLG00000011000 RLG00000033216 RLG00000034097 RLG00000034101
rosa_multiflora Rmu_sc0000161.1_g000001 Rmu_sc0000861.1_g000040 Rmu_sc0007522.1_g000003 Rmu_sc0009443.1_g000015 Rmu_sc0022129.1_g000001 Rmu_sc0042315.1_g000001
rosa_roxburghii Rroxscaffold_1G00038660 Rroxscaffold_1G00038690 Rroxscaffold_5G00349560 Rroxscaffold_5G00349610 Rroxscaffold_6G00388370 Rroxscaffold_7G00188740
rosa_rugosa Rorug03G0199700 Rorug04G0055400 Rorug04G0055500 Rorug04G0055900 Rorug04G0056000 Rorug04G0056100 Rorug04G0056100 Rorug04G0056200 Rorug05G0195600 Rorug05G0195700 Rorug05G0195800 Rorug05G0195900 Rorug05G0196800 Rorug05G0385000
rosa_samantha Rh4AG129900 Rh4AG130100 Rh4BG124200 Rh4BG124400 Rh4BG124500 Rh4CG137200 Rh4CG137300 Rh4DG123500 Rh4DG123700 Rh5AG280800 Rh5AG281400 Rh5BG286700 Rh5BG287000 Rh5BG397800 Rh5CG318100 Rh5CG318600 Rh5CG421600 Rh5DG132300 Rh5DG132400 Rh5DG295400 Rh5DG295700 Rh7BG475300
rosa_wichuraiana Rw0G001330 Rw0G005730 Rw4G008670 Rw4G010510 Rw4G010540 Rw5G026450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 714
AccB7I CCANNNNNTGG 1 cut(s) 926
AccBSI CCGCTC 1 cut(s) 2005
AccI GTMKAC 1 cut(s) 1231
AccIII TCCGGA 1 cut(s) 371
AciI CCGC 8 cut(s) 132, 419, 746, 752, 1017, 1822, 2005, 2333
AclWI GGATC 6 cut(s) 278, 456, 763, 1562, 2456, 2564
AcoI YGGCCR 1 cut(s) 513
AcsI RAATTY 7 cut(s) 808, 1088, 1298, 2012, 2279, 2341, 2542
AcuI CTGAAG 3 cut(s) 546, 1863, 2028
AdeI CACNNNGTG 3 cut(s) 349, 950, 1973
AfaI GTAC 4 cut(s) 1575, 1809, 2080, 2135
AfiI CCNNNNNNNGG 5 cut(s) 26, 926, 1147, 1387, 2480
AhlI ACTAGT 1 cut(s) 1585
AjnI CCWGG 2 cut(s) 1144, 2512
AleI CACNNNNGTG 1 cut(s) 396
AluBI AGCT 9 cut(s) 277, 297, 572, 1205, 1600, 1700, 1729, 2432, 2549
AluI AGCT 9 cut(s) 277, 297, 572, 1205, 1600, 1700, 1729, 2432, 2549
Alw21I GWGCWC 5 cut(s) 252, 336, 1328, 1731, 2198
Alw26I GTCTC 1 cut(s) 1684
Alw44I GTGCAC 2 cut(s) 332, 2194
AlwI GGATC 6 cut(s) 278, 456, 763, 1562, 2456, 2564
AlwNI CAGNNNCTG 1 cut(s) 893
Aor13HI TCCGGA 1 cut(s) 371
AoxI GGCC 5 cut(s) 425, 490, 513, 1660, 2392
ApaLI GTGCAC 2 cut(s) 332, 2194
ApeKI GCWGC 3 cut(s) 893, 1050, 1451
ApoI RAATTY 7 cut(s) 808, 1088, 1298, 2012, 2279, 2341, 2542
Asp700I GAANNNNTTC 2 cut(s) 581, 1417
AspS9I GGNCC 4 cut(s) 1288, 1660, 2393, 2516
AsuHPI GGTGA 8 cut(s) 128, 179, 383, 1915, 1985, 2020, 2102, 2513
AvaII GGWCC 2 cut(s) 1288, 2516
AxyI CCTNAGG 2 cut(s) 719, 886
BaeGI GKGCMC 3 cut(s) 336, 2143, 2198
BaeI ACNNNNGTAYC 2 cut(s) 966, 999
BalI TGGCCA 1 cut(s) 515
BanI GGYRCC 1 cut(s) 714
BanII GRGCYC 3 cut(s) 21, 180, 1731
BbsI GAAGAC 4 cut(s) 539, 1490, 1625, 1869
Bbv12I GWGCWC 5 cut(s) 252, 336, 1328, 1731, 2198
BbvCI CCTCAGC 1 cut(s) 897
BbvI GCAGC 3 cut(s) 880, 1037, 1438
BccI CCATC 6 cut(s) 677, 948, 1205, 1733, 1894, 2446
BcgI CGANNNNNNTGC 4 cut(s) 214, 248, 650, 684
BciT130I CCWGG 2 cut(s) 1146, 2514
BcoDI GTCTC 1 cut(s) 1684
BcuI ACTAGT 1 cut(s) 1585
BfaI CTAG 5 cut(s) 494, 573, 1181, 1586, 2373
BfmI CTRYAG 1 cut(s) 2537
BglI GCCNNNNNGGC 1 cut(s) 2391
BglII AGATCT 1 cut(s) 2302
BisI GCNGC 4 cut(s) 133, 894, 1051, 1452
BlsI GCNGC 4 cut(s) 134, 895, 1052, 1453
Bme1390I CCNGG 2 cut(s) 1146, 2514
Bme18I GGWCC 2 cut(s) 1288, 2516
BmgT120I GGNCC 4 cut(s) 1288, 1660, 2393, 2516
BmiI GGNNCC 4 cut(s) 716, 871, 1289, 2021
BmrFI CCNGG 2 cut(s) 1146, 2514
BmrI ACTGGG 1 cut(s) 1979
BmsI GCATC 6 cut(s) 14, 792, 1116, 2026, 2116, 2434
BmuI ACTGGG 1 cut(s) 1979
BpiI GAAGAC 4 cut(s) 539, 1490, 1625, 1869
BpmI CTGGAG 3 cut(s) 999, 1524, 1919
Bpu10I CCTNAGC 1 cut(s) 897
BpuEI CTTGAG 1 cut(s) 1019
Bsa29I ATCGAT 2 cut(s) 597, 2559
BsaAI YACGTR 1 cut(s) 2078
BsaI GGTCTC 1 cut(s) 1684
BsaJI CCNNGG 4 cut(s) 287, 1145, 1422, 2095
BsaWI WCCGGW 2 cut(s) 371, 1570
BsaXI ACNNNNNCTCC 6 cut(s) 100, 130, 366, 396, 1383, 1413
Bsc4I CCNNNNNNNGG 5 cut(s) 26, 926, 1147, 1387, 2480
Bse1I ACTGG 5 cut(s) 169, 249, 844, 982, 1974
Bse21I CCTNAGG 2 cut(s) 719, 886
BseAI TCCGGA 1 cut(s) 371
BseBI CCWGG 2 cut(s) 1146, 2514
BseCI ATCGAT 2 cut(s) 597, 2559
BseDI CCNNGG 4 cut(s) 287, 1145, 1422, 2095
BseLI CCNNNNNNNGG 5 cut(s) 26, 926, 1147, 1387, 2480
BseMII CTCAG 8 cut(s) 195, 228, 246, 888, 900, 1992, 2190, 2247
BseNI ACTGG 5 cut(s) 169, 249, 844, 982, 1974
BseRI GAGGAG 1 cut(s) 862
BseSI GKGCMC 3 cut(s) 336, 2143, 2198
BseXI GCAGC 3 cut(s) 880, 1037, 1438
BseYI CCCAGC 1 cut(s) 2117
BsgI GTGCAG 1 cut(s) 1228
BshFI GGCC 5 cut(s) 427, 492, 515, 1662, 2394
BshNI GGYRCC 1 cut(s) 714
BshVI ATCGAT 2 cut(s) 597, 2559
BsiHKAI GWGCWC 5 cut(s) 252, 336, 1328, 1731, 2198
BsiSI CCGG 3 cut(s) 372, 785, 1571
BslFI GGGAC 2 cut(s) 1301, 2276
BslI CCNNNNNNNGG 5 cut(s) 26, 926, 1147, 1387, 2480
BsmAI GTCTC 1 cut(s) 1684
BsmFI GGGAC 2 cut(s) 1301, 2276
BsmI GAATGC 2 cut(s) 339, 2363
BsnI GGCC 5 cut(s) 427, 492, 515, 1662, 2394
Bso31I GGTCTC 1 cut(s) 1684
Bsp1286I GDGCHC 8 cut(s) 21, 180, 252, 336, 1328, 1731, 2143, 2198
Bsp13I TCCGGA 1 cut(s) 371
Bsp19I CCATGG 1 cut(s) 2095
BspACI CCGC 8 cut(s) 132, 419, 746, 752, 1017, 1822, 2005, 2333
BspANI GGCC 5 cut(s) 427, 492, 515, 1662, 2394
BspCNI CTCAG 8 cut(s) 194, 229, 247, 889, 899, 1993, 2191, 2246
BspDI ATCGAT 2 cut(s) 597, 2559
BspEI TCCGGA 1 cut(s) 371
BspHI TCATGA 1 cut(s) 1959
BspLI GGNNCC 4 cut(s) 716, 871, 1289, 2021
BspPI GGATC 6 cut(s) 278, 456, 763, 1562, 2456, 2564
BspQI GCTCTTC 2 cut(s) 287, 1520
BspT107I GGYRCC 1 cut(s) 714
BspTNI GGTCTC 1 cut(s) 1684
BsrBI CCGCTC 1 cut(s) 2005
BsrI ACTGG 5 cut(s) 169, 249, 844, 982, 1974
BssECI CCNNGG 4 cut(s) 287, 1145, 1422, 2095
BssNAI GTATAC 1 cut(s) 1232
BssT1I CCWWGG 2 cut(s) 1422, 2095
Bst1107I GTATAC 1 cut(s) 1232
Bst2UI CCWGG 2 cut(s) 1146, 2514
Bst4CI ACNGT 8 cut(s) 26, 116, 331, 827, 1229, 1279, 1807, 2138
Bst6I CTCTTC 5 cut(s) 287, 522, 536, 1520, 1644
BstAPI GCANNNNNTGC 1 cut(s) 2193
BstBAI YACGTR 1 cut(s) 2078
BstC8I GCNNGC 2 cut(s) 1015, 1142
BstDSI CCRYGG 1 cut(s) 2095
BstEII GGTNACC 2 cut(s) 2090, 2483
BstENI CCTNNNNNAGG 1 cut(s) 1385
BstMAI GTCTC 1 cut(s) 1684
BstMWI GCNNNNNNNGC 3 cut(s) 283, 2193, 2391
BstNI CCWGG 2 cut(s) 1146, 2514
BstPI GGTNACC 2 cut(s) 2090, 2483
BstSCI CCNGG 2 cut(s) 1144, 2512
BstSFI CTRYAG 1 cut(s) 2537
BstSLI GKGCMC 3 cut(s) 336, 2143, 2198
BstV1I GCAGC 3 cut(s) 880, 1037, 1438
BstV2I GAAGAC 4 cut(s) 539, 1490, 1625, 1869
BstX2I RGATCY 2 cut(s) 755, 2302
BstXI CCANNNNNNTGG 3 cut(s) 511, 977, 2150
BstYI RGATCY 2 cut(s) 755, 2302
BstZ17I GTATAC 1 cut(s) 1232
Bsu15I ATCGAT 2 cut(s) 597, 2559
Bsu36I CCTNAGG 2 cut(s) 719, 886
BsuRI GGCC 5 cut(s) 427, 492, 515, 1662, 2394
BsuTUI ATCGAT 2 cut(s) 597, 2559
BtgI CCRYGG 1 cut(s) 2095
BtgZI GCGATG 1 cut(s) 693
BtsI GCAGTG 1 cut(s) 334
BtsIMutI CAGTG 6 cut(s) 334, 472, 851, 1614, 1967, 2196
Cac8I GCNNGC 2 cut(s) 1015, 1142
CaiI CAGNNNCTG 1 cut(s) 893
CciI TCATGA 1 cut(s) 1959
Cfr13I GGNCC 4 cut(s) 1288, 1660, 2393, 2516
ClaI ATCGAT 2 cut(s) 597, 2559
Csp6I GTAC 4 cut(s) 1574, 1808, 2079, 2134
CviAII CATG 8 cut(s) 89, 158, 207, 731, 1253, 1960, 2096, 2144
CviQI GTAC 4 cut(s) 1574, 1808, 2079, 2134
DraI TTTAAA 1 cut(s) 2250
DraIII CACNNNGTG 3 cut(s) 349, 950, 1973
EaeI YGGCCR 1 cut(s) 513
Eam1104I CTCTTC 5 cut(s) 287, 522, 536, 1520, 1644
EarI CTCTTC 5 cut(s) 287, 522, 536, 1520, 1644
Ecl136II GAGCTC 1 cut(s) 1729
Eco130I CCWWGG 2 cut(s) 1422, 2095
Eco147I AGGCCT 1 cut(s) 427
Eco24I GRGCYC 3 cut(s) 21, 180, 1731
Eco31I GGTCTC 1 cut(s) 1684
Eco32I GATATC 1 cut(s) 485
Eco47I GGWCC 2 cut(s) 1288, 2516
Eco53kI GAGCTC 1 cut(s) 1729
Eco57I CTGAAG 3 cut(s) 546, 1863, 2028
Eco81I CCTNAGG 2 cut(s) 719, 886
Eco91I GGTNACC 2 cut(s) 2090, 2483
EcoICRI GAGCTC 1 cut(s) 1729
EcoNI CCTNNNNNAGG 1 cut(s) 1385
EcoO109I RGGNCCY 1 cut(s) 2393
EcoO65I GGTNACC 2 cut(s) 2090, 2483
EcoRI GAATTC 1 cut(s) 2542
EcoRII CCWGG 2 cut(s) 1144, 2512
EcoRV GATATC 1 cut(s) 485
EcoT14I CCWWGG 2 cut(s) 1422, 2095
EcoT38I GRGCYC 3 cut(s) 21, 180, 1731
ErhI CCWWGG 2 cut(s) 1422, 2095
FaeI CATG 8 cut(s) 92, 161, 210, 734, 1256, 1963, 2099, 2147
FalI AAGNNNNNCTT 2 cut(s) 1517, 1549
FaqI GGGAC 2 cut(s) 1301, 2276
FatI CATG 8 cut(s) 88, 157, 206, 730, 1252, 1959, 2095, 2143
FauI CCCGC 5 cut(s) 739, 745, 1010, 1998, 2326
FauNDI CATATG 1 cut(s) 415
FblI GTMKAC 1 cut(s) 1231
Fnu4HI GCNGC 4 cut(s) 133, 894, 1051, 1452
FriOI GRGCYC 3 cut(s) 21, 180, 1731
Fsp4HI GCNGC 4 cut(s) 133, 894, 1051, 1452
FspBI CTAG 5 cut(s) 494, 573, 1181, 1586, 2373
GluI GCNGC 4 cut(s) 133, 894, 1051, 1452
GsaI CCCAGC 1 cut(s) 2121
GsuI CTGGAG 3 cut(s) 999, 1524, 1919
HaeIII GGCC 5 cut(s) 427, 492, 515, 1662, 2394
HapII CCGG 3 cut(s) 372, 785, 1571
Hin1II CATG 8 cut(s) 92, 161, 210, 734, 1256, 1963, 2099, 2147
HincII GTYRAC 3 cut(s) 478, 1687, 1830
HindII GTYRAC 3 cut(s) 478, 1687, 1830
HindIII AAGCTT 2 cut(s) 275, 1598
HinfI GANTC 8 cut(s) 377, 388, 500, 1022, 1547, 1781, 2157, 2405
HpaII CCGG 3 cut(s) 372, 785, 1571
HphI GGTGA 8 cut(s) 128, 179, 383, 1915, 1985, 2020, 2102, 2513
Hpy166II GTNNAC 9 cut(s) 29, 334, 478, 830, 1061, 1232, 1687, 1830, 2196
Hpy188III TCNNGA 8 cut(s) 362, 372, 1541, 1936, 1960, 2017, 2174, 2316
Hpy8I GTNNAC 9 cut(s) 29, 334, 478, 830, 1061, 1232, 1687, 1830, 2196
HpyAV CCTTC 8 cut(s) 438, 701, 1072, 1178, 1278, 1756, 2177, 2184
HpyCH4III ACNGT 8 cut(s) 26, 116, 331, 827, 1229, 1279, 1807, 2138
HpyCH4IV ACGT 2 cut(s) 2077, 2479
HpyF10VI GCNNNNNNNGC 3 cut(s) 283, 2193, 2391
HpySE526I ACGT 2 cut(s) 2077, 2479
Hsp92II CATG 8 cut(s) 92, 161, 210, 734, 1256, 1963, 2099, 2147
Kpn2I TCCGGA 1 cut(s) 371
LguI GCTCTTC 2 cut(s) 287, 1520
LmnI GCTCC 2 cut(s) 875, 2515
Lsp1109I GCAGC 3 cut(s) 880, 1037, 1438
LweI GCATC 6 cut(s) 14, 792, 1116, 2026, 2116, 2434
MaeI CTAG 5 cut(s) 494, 573, 1181, 1586, 2373
MaeII ACGT 2 cut(s) 2077, 2479
MaeIII GTNAC 5 cut(s) 110, 1853, 1882, 2090, 2483
MbiI CCGCTC 1 cut(s) 2005
MflI RGATCY 2 cut(s) 755, 2302
MhlI GDGCHC 8 cut(s) 21, 180, 252, 336, 1328, 1731, 2143, 2198
MlsI TGGCCA 1 cut(s) 515
MluNI TGGCCA 1 cut(s) 515
MlyI GAGTC 1 cut(s) 2399
MmeI TCCRAC 3 cut(s) 248, 2489, 2534
Mox20I TGGCCA 1 cut(s) 515
MroI TCCGGA 1 cut(s) 371
MroXI GAANNNNTTC 2 cut(s) 581, 1417
MscI TGGCCA 1 cut(s) 515
MseI TTAA 4 cut(s) 966, 1923, 2211, 2249
MslI CAYNNNNRTG 2 cut(s) 396, 2148
Msp20I TGGCCA 1 cut(s) 515
MspA1I CMGCKG 1 cut(s) 2549
MspI CCGG 3 cut(s) 372, 785, 1571
MspR9I CCNGG 2 cut(s) 1146, 2514
Mva1269I GAATGC 2 cut(s) 339, 2363
MvaI CCWGG 2 cut(s) 1146, 2514
MwoI GCNNNNNNNGC 3 cut(s) 283, 2193, 2391
NcoI CCATGG 1 cut(s) 2095
NdeI CATATG 1 cut(s) 415
NlaIII CATG 8 cut(s) 92, 161, 210, 734, 1256, 1963, 2099, 2147
NlaIV GGNNCC 4 cut(s) 716, 871, 1289, 2021
NmeAIII GCCGAG 1 cut(s) 312
NmuCI GTSAC 2 cut(s) 110, 2090
OliI CACNNNNGTG 1 cut(s) 396
PagI TCATGA 1 cut(s) 1959
PceI AGGCCT 1 cut(s) 427
PciSI GCTCTTC 2 cut(s) 287, 1520
PctI GAATGC 2 cut(s) 339, 2363
PdmI GAANNNNTTC 2 cut(s) 581, 1417
PfeI GAWTC 7 cut(s) 377, 388, 500, 1022, 1547, 1781, 2157
PflFI GACNNNGTC 1 cut(s) 2288
PflMI CCANNNNNTGG 1 cut(s) 926
PkrI GCNGC 4 cut(s) 134, 895, 1052, 1453
PleI GAGTC 1 cut(s) 2399
PpsI GAGTC 1 cut(s) 2399
Ppu21I YACGTR 1 cut(s) 2078
Psp124BI GAGCTC 1 cut(s) 1731
Psp6I CCWGG 2 cut(s) 1144, 2512
PspEI GGTNACC 2 cut(s) 2090, 2483
PspFI CCCAGC 1 cut(s) 2117
PspGI CCWGG 2 cut(s) 1144, 2512
PspN4I GGNNCC 4 cut(s) 716, 871, 1289, 2021
PspPI GGNCC 4 cut(s) 1288, 1660, 2393, 2516
PsrI GAACNNNNNNTAC 2 cut(s) 84, 116
PstNI CAGNNNCTG 1 cut(s) 893
PsuI RGATCY 2 cut(s) 755, 2302
PsyI GACNNNGTC 1 cut(s) 2288
PvuII CAGCTG 1 cut(s) 2549
RsaI GTAC 4 cut(s) 1575, 1809, 2080, 2135
RsaNI GTAC 4 cut(s) 1574, 1808, 2079, 2134
RseI CAYNNNNRTG 2 cut(s) 396, 2148
SacI GAGCTC 1 cut(s) 1731
SapI GCTCTTC 2 cut(s) 287, 1520
SaqAI TTAA 4 cut(s) 966, 1923, 2211, 2249
SatI GCNGC 4 cut(s) 133, 894, 1051, 1452
Sau96I GGNCC 4 cut(s) 1288, 1660, 2393, 2516
SchI GAGTC 1 cut(s) 2399
ScrFI CCNGG 2 cut(s) 1146, 2514
SduI GDGCHC 8 cut(s) 21, 180, 252, 336, 1328, 1731, 2143, 2198
SfaNI GCATC 6 cut(s) 14, 792, 1116, 2026, 2116, 2434
SfcI CTRYAG 1 cut(s) 2537
SinI GGWCC 2 cut(s) 1288, 2516
SmiI ATTTAAAT 1 cut(s) 2250
SmiMI CAYNNNNRTG 2 cut(s) 396, 2148
SmlI CTYRAG 1 cut(s) 998
SmoI CTYRAG 1 cut(s) 998
SpeI ACTAGT 1 cut(s) 1585
SseBI AGGCCT 1 cut(s) 427
SsiI CCGC 8 cut(s) 132, 419, 746, 752, 1017, 1822, 2005, 2333
SspI AATATT 3 cut(s) 35, 960, 1417
SspMI CTAG 5 cut(s) 494, 573, 1181, 1586, 2373
SstI GAGCTC 1 cut(s) 1731
StuI AGGCCT 1 cut(s) 427
StyD4I CCNGG 2 cut(s) 1144, 2512
StyI CCWWGG 2 cut(s) 1422, 2095
SwaI ATTTAAAT 1 cut(s) 2250
TaaI ACNGT 8 cut(s) 26, 116, 331, 827, 1229, 1279, 1807, 2138
TaiI ACGT 2 cut(s) 2080, 2482
TaqI TCGA 5 cut(s) 224, 597, 931, 2155, 2559
TatI WGTACW 1 cut(s) 2133
TauI GCSGC 1 cut(s) 135
TfiI GAWTC 7 cut(s) 377, 388, 500, 1022, 1547, 1781, 2157
Tru1I TTAA 4 cut(s) 966, 1923, 2211, 2249
Tru9I TTAA 4 cut(s) 966, 1923, 2211, 2249
TscAI CASTG 6 cut(s) 341, 472, 851, 1614, 1974, 2203
TseFI GTSAC 2 cut(s) 110, 2090
TseI GCWGC 3 cut(s) 893, 1050, 1451
Tsp45I GTSAC 2 cut(s) 110, 2090
TspDTI ATGAA 9 cut(s) 77, 554, 639, 719, 1031, 2196, 2273, 2297, 2435
TspGWI ACGGA 2 cut(s) 1100, 1933
TspRI CASTG 6 cut(s) 341, 472, 851, 1614, 1974, 2203
Tth111I GACNNNGTC 1 cut(s) 2288
Van91I CCANNNNNTGG 1 cut(s) 926
VneI GTGCAC 2 cut(s) 332, 2194
VpaK11BI GGWCC 2 cut(s) 1288, 2516
XagI CCTNNNNNAGG 1 cut(s) 1385
XapI RAATTY 7 cut(s) 808, 1088, 1298, 2012, 2279, 2341, 2542
XmiI GTMKAC 1 cut(s) 1231
XmnI GAANNNNTTC 2 cut(s) 581, 1417
XspI CTAG 5 cut(s) 494, 573, 1181, 1586, 2373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.