RchiOBHm_Chr5g0059241

metal ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000343
Physical Location & Seq
Reverse (-)
64142402 .. 64146111
3710 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33584

Sequence Viewer

Length: 1164 bp
ATGAAAATGTTCTGTTTGAAGGCTTCAGCTAGTAACTCAGACGGCGAGGACCGCAAGTTGACAAGAAAGGAGAAGGACGGAGGATGTAAGATCGAGTACACTACTGAAAAACCAGCCACGCCATTGCTGGACACAATCAATTACCCAGCTCACATGAAGAATCTATCAACACAGGATCTCGAACAACTAGCAGCAGAGCTCAGAATGGATATTGTTCACAGTGTTTCACAGACAGGTGGGCATCTCAGTTTTAGCTTGGGTGTGGTGGAGCTATCAGTGGCATTGCATCATGTGTTCAGCACCCCTGACGATAAAATCATATGGGATGTTGGTCATCAGGATATCCAAGTTAGAAAAAAGCCAGGATTGTCCACTGATGACATATTCGATACGGTTTGTGCTTTTTGTGATAATGGTGGCAGCCTTTTGTGTTGTGAAGGGCGATGCCTAAGGTCCTTTCATGCAACTGTAAAGGACGGTGAGGGCTTTACTTGTGAATCTCTTGGATTTTCCCAGGATGAAGTAGATGCAATTCGAAAAATTGATTTCTACTGCAAGAACTGTCAATATAAACAGCATCAGTGCTATGCTTGTGGGAGGTTAGGATCCTCGGACAAATCTTTAGGTGCTGAGGTCTTCCCCTGCACTTCTGCAAGGTGTGGTCAGTTTTATCATCCTCATTGTATTGCAAAATTAAGATATCATGAGACCGGAGTTTCTGCAGAAGAACTTGAGAAAAGAATTATGCTGGGGGAATCTTTTACATGTCCAATTCACAAGTGCTGGTTTTGTAAGCAAGGAGAGAATAAGAAGGATCCTGAATTGCAGTTTGCTGTGTGTAGGCGTTGTCCTACATCCTACCACCGTAAATGCTTGCCACGGGACATTCGTTTTGCAAAAGGCAAGGAAGGTGATGAGGAAGACATGGATACAAGAGCTTGGGAAGGTCTATTACCTGACCGTGTGCTAATATATTGCATGTACTTGCAAAAGCACAGCTTTGACTCTATGTTTATTCTGAAGGCATTCACTTACAAACATTGTTCTAAAAGTTCATCAAGTGATAATATCTACAGCCAATCCAAGCAGAGCACAACATGGTTTTTCTATTTGAACCCTTCACTGTCAAGAAATCAAATATACTGTAAACAATTAGAATGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006950 GO:0006952 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009791 GO:0009889 GO:0009893 GO:0009909 GO:0009911 GO:0009987 GO:0010228 GO:0010468 GO:0010556 GO:0010604 GO:0010638 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030154 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031326 GO:0031399 GO:0031401 GO:0031440 GO:0031935 GO:0031937 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0033043 GO:0033044 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043954 GO:0044030 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048468 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050684 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051052 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051276 GO:0051570 GO:0051574 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060968 GO:0061085 GO:0061087 GO:0061458 GO:0065007 GO:0070827 GO:0070828 GO:0070829 GO:0071840 GO:0080090 GO:0090436 GO:0097159 GO:0098542 GO:0099402 GO:0140110 GO:1900109 GO:1900111 GO:1900363 GO:1901363 GO:1902275 GO:1903311 GO:1903506 GO:1905269 GO:2000024 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNMT1-RFD

Protein Analysis

387

Amino Acids

44.02

Weight (kDa)

6.91

Isoelectric Point (pI)

44.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DXP_synthase_N PF13292 43 - 113 9.4e-28 1-deoxy-D-xylulose-5-phosphate synthase
PHD_NSD PF22908 191 - 259 5.6e-19 Histone-lysine N-methyltransferase NSD-like, PHD zinc finger
PHDvar_NSD PF23004 261 - 298 3.2e-06 Histone-lysine N-methyltransferase NSD-like, variant PHD zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000343)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48090 AT5G48090 AT5G48090 AT5G55390 AT5G55390 AT5G55390
fragaria_vesca FvH4_3g23690 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160
malus_domestica MD03G1191000.v1.1 MD11G1207800.v1.1 MD11G1208000.v1.1
prunus_persica Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227600_v2.0.a1 Prupe.4G227700_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1
pyrus_communis pycom01g03400 pycom03g14420 pycom11g18100 pycom11g18140 pycom11g18150 pycom11g18160
rosa_chinensis RchiOBHm_Chr2g0145981 RchiOBHm_Chr4g0405241 RchiOBHm_Chr4g0405271 RchiOBHm_Chr5g0016201 RchiOBHm_Chr5g0041831 RchiOBHm_Chr5g0041871 RchiOBHm_Chr5g0041881 RchiOBHm_Chr5g0059241
rosa_laevigata RLG00000002117 RLG00000008861 RLG00000008862 RLG00000011000 RLG00000033216 RLG00000034097 RLG00000034101
rosa_multiflora Rmu_sc0000161.1_g000001 Rmu_sc0000861.1_g000040 Rmu_sc0007522.1_g000003 Rmu_sc0009443.1_g000015 Rmu_sc0022129.1_g000001 Rmu_sc0042315.1_g000001
rosa_roxburghii Rroxscaffold_1G00038660 Rroxscaffold_1G00038690 Rroxscaffold_5G00349560 Rroxscaffold_5G00349610 Rroxscaffold_6G00388370 Rroxscaffold_7G00188740
rosa_rugosa Rorug03G0199700 Rorug04G0055400 Rorug04G0055500 Rorug04G0055900 Rorug04G0056000 Rorug04G0056100 Rorug04G0056100 Rorug04G0056200 Rorug05G0195600 Rorug05G0195700 Rorug05G0195800 Rorug05G0195900 Rorug05G0196800 Rorug05G0385000
rosa_samantha Rh4AG129900 Rh4AG130100 Rh4BG124200 Rh4BG124400 Rh4BG124500 Rh4CG137200 Rh4CG137300 Rh4DG123500 Rh4DG123700 Rh5AG280800 Rh5AG281400 Rh5BG286700 Rh5BG287000 Rh5BG397800 Rh5CG318100 Rh5CG318600 Rh5CG421600 Rh5DG132300 Rh5DG132400 Rh5DG295400 Rh5DG295700 Rh7BG475300
rosa_wichuraiana Rw0G001330 Rw0G005730 Rw4G008670 Rw4G010510 Rw4G010540 Rw5G026450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 52
AclWI GGATC 5 cut(s) 183, 600, 613, 809, 822
AcuI CTGAAG 2 cut(s) 9, 1040
AfaI GTAC 2 cut(s) 98, 983
AflIII ACRYGT 1 cut(s) 764
AgsI TTSAA 2 cut(s) 19, 1114
AjnI CCWGG 2 cut(s) 361, 513
AluBI AGCT 7 cut(s) 29, 149, 199, 255, 271, 938, 999
AluI AGCT 7 cut(s) 29, 149, 199, 255, 271, 938, 999
Alw21I GWGCWC 2 cut(s) 201, 1094
Alw26I GTCTC 1 cut(s) 701
AlwI GGATC 5 cut(s) 183, 600, 613, 809, 822
ApeKI GCWGC 2 cut(s) 191, 420
ArsI GACNNNNNNTTYG 2 cut(s) 875, 907
Asp700I GAANNNNTTC 2 cut(s) 8, 1025
AspS9I GGNCC 2 cut(s) 49, 453
AsuHPI GGTGA 2 cut(s) 491, 923
AsuII TTCGAA 1 cut(s) 535
AvaII GGWCC 2 cut(s) 49, 453
AxyI CCTNAGG 1 cut(s) 449
BamHI GGATCC 2 cut(s) 605, 814
BanII GRGCYC 1 cut(s) 201
BarI GAAGNNNNNNTAC 2 cut(s) 936, 968
BbsI GAAGAC 2 cut(s) 628, 927
Bbv12I GWGCWC 2 cut(s) 201, 1094
BbvCI CCTCAGC 1 cut(s) 630
BbvI GCAGC 2 cut(s) 203, 432
BceAI ACGGC 1 cut(s) 58
BciT130I CCWGG 2 cut(s) 363, 515
BciVI GTATCC 1 cut(s) 922
BcoDI GTCTC 1 cut(s) 701
BfaI CTAG 3 cut(s) 30, 188, 1162
BfmI CTRYAG 2 cut(s) 720, 1072
BfuI GTATCC 1 cut(s) 922
BisI GCNGC 2 cut(s) 192, 421
BlsI GCNGC 2 cut(s) 193, 422
Bme1390I CCNGG 2 cut(s) 363, 515
Bme18I GGWCC 2 cut(s) 49, 453
BmgT120I GGNCC 2 cut(s) 49, 453
BmiI GGNNCC 2 cut(s) 607, 816
BmrFI CCNGG 2 cut(s) 363, 515
BmsI GCATC 5 cut(s) 250, 295, 434, 517, 586
BpiI GAAGAC 2 cut(s) 628, 927
Bpu10I CCTNAGC 1 cut(s) 630
Bpu14I TTCGAA 1 cut(s) 535
BpuEI CTTGAG 1 cut(s) 752
BsaI GGTCTC 1 cut(s) 701
BsaJI CCNNGG 3 cut(s) 513, 609, 878
BsaWI WCCGGW 1 cut(s) 710
Bse21I CCTNAGG 1 cut(s) 449
Bse3DI GCAATG 2 cut(s) 122, 281
BseBI CCWGG 2 cut(s) 363, 515
BseDI CCNNGG 3 cut(s) 513, 609, 878
BseGI GGATG 5 cut(s) 89, 331, 523, 673, 854
BseMI GCAATG 2 cut(s) 122, 281
BseMII CTCAG 4 cut(s) 51, 214, 259, 621
BseXI GCAGC 2 cut(s) 203, 432
BseYI CCCAGC 2 cut(s) 145, 748
BsgI GTGCAG 1 cut(s) 628
BsiHKAI GWGCWC 2 cut(s) 201, 1094
BsiSI CCGG 1 cut(s) 711
BslFI GGGAC 1 cut(s) 896
BsmAI GTCTC 1 cut(s) 701
BsmFI GGGAC 1 cut(s) 896
BsmI GAATGC 2 cut(s) 1025, 1163
Bso31I GGTCTC 1 cut(s) 701
Bsp119I TTCGAA 1 cut(s) 535
Bsp1286I GDGCHC 2 cut(s) 201, 1094
Bsp143I GATC 4 cut(s) 90, 175, 605, 814
BspACI CCGC 1 cut(s) 52
BspCNI CTCAG 4 cut(s) 50, 213, 258, 622
BspHI TCATGA 1 cut(s) 703
BspLI GGNNCC 2 cut(s) 607, 816
BspMAI CTGCAG 1 cut(s) 724
BspPI GGATC 5 cut(s) 183, 600, 613, 809, 822
BspT104I TTCGAA 1 cut(s) 535
BspTNI GGTCTC 1 cut(s) 701
BsrDI GCAATG 2 cut(s) 122, 281
BssECI CCNNGG 3 cut(s) 513, 609, 878
BssMI GATC 4 cut(s) 90, 175, 605, 814
Bst2UI CCWGG 2 cut(s) 363, 515
Bst4CI ACNGT 9 cut(s) 221, 394, 469, 479, 563, 866, 962, 1125, 1145
BstBI TTCGAA 1 cut(s) 535
BstC8I GCNNGC 1 cut(s) 875
BstDEI CTNAG 5 cut(s) 37, 200, 245, 449, 630
BstDSI CCRYGG 1 cut(s) 878
BstF5I GGATG 5 cut(s) 89, 331, 523, 673, 854
BstKTI GATC 4 cut(s) 93, 178, 608, 817
BstMAI GTCTC 1 cut(s) 701
BstMBI GATC 4 cut(s) 90, 175, 605, 814
BstMWI GCNNNNNNNGC 1 cut(s) 51
BstNI CCWGG 2 cut(s) 363, 515
BstNSI RCATGY 2 cut(s) 768, 982
BstSCI CCNGG 2 cut(s) 361, 513
BstSFI CTRYAG 2 cut(s) 720, 1072
BstV1I GCAGC 2 cut(s) 203, 432
BstV2I GAAGAC 2 cut(s) 628, 927
BstX2I RGATCY 3 cut(s) 175, 605, 814
BstYI RGATCY 3 cut(s) 175, 605, 814
Bsu36I CCTNAGG 1 cut(s) 449
BsuI GTATCC 1 cut(s) 922
BtgI CCRYGG 1 cut(s) 878
BtgZI GCGATG 1 cut(s) 457
BtsCI GGATG 5 cut(s) 89, 331, 523, 673, 854
BtsIMutI CAGTG 5 cut(s) 226, 282, 372, 587, 1121
Cac8I GCNNGC 1 cut(s) 875
CciI TCATGA 1 cut(s) 703
Cfr13I GGNCC 2 cut(s) 49, 453
Csp6I GTAC 2 cut(s) 97, 982
CviAII CATG 8 cut(s) 154, 290, 461, 704, 765, 925, 979, 1098
CviQI GTAC 2 cut(s) 97, 982
DdeI CTNAG 5 cut(s) 37, 200, 245, 449, 630
DpnI GATC 4 cut(s) 92, 177, 607, 816
DpnII GATC 4 cut(s) 90, 175, 605, 814
Ecl136II GAGCTC 1 cut(s) 199
Eco24I GRGCYC 1 cut(s) 201
Eco31I GGTCTC 1 cut(s) 701
Eco32I GATATC 2 cut(s) 343, 701
Eco47I GGWCC 2 cut(s) 49, 453
Eco53kI GAGCTC 1 cut(s) 199
Eco57I CTGAAG 2 cut(s) 9, 1040
Eco81I CCTNAGG 1 cut(s) 449
EcoICRI GAGCTC 1 cut(s) 199
EcoO109I RGGNCCY 1 cut(s) 453
EcoRII CCWGG 2 cut(s) 361, 513
EcoRV GATATC 2 cut(s) 343, 701
EcoT38I GRGCYC 1 cut(s) 201
FaeI CATG 8 cut(s) 157, 293, 464, 707, 768, 928, 982, 1101
FalI AAGNNNNNCTT 2 cut(s) 983, 1015
FaqI GGGAC 1 cut(s) 896
FatI CATG 8 cut(s) 153, 289, 460, 703, 764, 924, 978, 1097
FauNDI CATATG 1 cut(s) 320
Fnu4HI GCNGC 2 cut(s) 192, 421
FokI GGATG 5 cut(s) 96, 338, 530, 660, 841
FriOI GRGCYC 1 cut(s) 201
Fsp4HI GCNGC 2 cut(s) 192, 421
FspBI CTAG 3 cut(s) 30, 188, 1162
GluI GCNGC 2 cut(s) 192, 421
GsaI CCCAGC 2 cut(s) 149, 752
HapII CCGG 1 cut(s) 711
Hin1II CATG 8 cut(s) 157, 293, 464, 707, 768, 928, 982, 1101
HincII GTYRAC 1 cut(s) 60
HindII GTYRAC 1 cut(s) 60
HinfI GANTC 4 cut(s) 160, 497, 755, 1004
HpaII CCGG 1 cut(s) 711
HphI GGTGA 2 cut(s) 491, 923
Hpy166II GTNNAC 5 cut(s) 60, 99, 217, 372, 1148
Hpy188I TCNGA 4 cut(s) 40, 203, 613, 1020
Hpy188III TCNNGA 5 cut(s) 179, 338, 704, 818, 1128
Hpy8I GTNNAC 5 cut(s) 60, 99, 217, 372, 1148
HpyAV CCTTC 8 cut(s) 13, 67, 431, 805, 902, 938, 1015, 1128
HpyCH4III ACNGT 9 cut(s) 221, 394, 469, 479, 563, 866, 962, 1125, 1145
HpyF10VI GCNNNNNNNGC 1 cut(s) 51
HpyF3I CTNAG 5 cut(s) 37, 200, 245, 449, 630
Hsp92II CATG 8 cut(s) 157, 293, 464, 707, 768, 928, 982, 1101
Kzo9I GATC 4 cut(s) 90, 175, 605, 814
LmnI GCTCC 1 cut(s) 268
Lsp1109I GCAGC 2 cut(s) 203, 432
LweI GCATC 5 cut(s) 250, 295, 434, 517, 586
MaeI CTAG 3 cut(s) 30, 188, 1162
MaeIII GTNAC 1 cut(s) 32
MalI GATC 4 cut(s) 92, 177, 607, 816
MboI GATC 4 cut(s) 90, 175, 605, 814
MboII GAAGA 4 cut(s) 169, 628, 737, 932
MflI RGATCY 3 cut(s) 175, 605, 814
MhlI GDGCHC 2 cut(s) 201, 1094
MluCI AATT 8 cut(s) 139, 531, 540, 692, 741, 771, 821, 1151
MlyI GAGTC 1 cut(s) 998
MnlI CCTC 8 cut(s) 40, 74, 475, 591, 619, 625, 687, 910
MroXI GAANNNNTTC 2 cut(s) 8, 1025
MseI TTAA 1 cut(s) 695
MspI CCGG 1 cut(s) 711
MspR9I CCNGG 2 cut(s) 363, 515
Mva1269I GAATGC 2 cut(s) 1025, 1163
MvaI CCWGG 2 cut(s) 363, 515
MwoI GCNNNNNNNGC 1 cut(s) 51
NdeI CATATG 1 cut(s) 320
NdeII GATC 4 cut(s) 90, 175, 605, 814
NlaIII CATG 8 cut(s) 157, 293, 464, 707, 768, 928, 982, 1101
NlaIV GGNNCC 2 cut(s) 607, 816
NspI RCATGY 2 cut(s) 768, 982
NspV TTCGAA 1 cut(s) 535
PagI TCATGA 1 cut(s) 703
PciI ACATGT 1 cut(s) 764
PcsI WCGNNNNNNNCGW 1 cut(s) 886
PctI GAATGC 2 cut(s) 1025, 1163
PdmI GAANNNNTTC 2 cut(s) 8, 1025
PfeI GAWTC 3 cut(s) 160, 497, 755
PkrI GCNGC 2 cut(s) 193, 422
PleI GAGTC 1 cut(s) 998
PpsI GAGTC 1 cut(s) 998
PpuMI RGGWCCY 1 cut(s) 453
PscI ACATGT 1 cut(s) 764
Psp124BI GAGCTC 1 cut(s) 201
Psp5II RGGWCCY 1 cut(s) 453
Psp6I CCWGG 2 cut(s) 361, 513
PspFI CCCAGC 2 cut(s) 145, 748
PspGI CCWGG 2 cut(s) 361, 513
PspN4I GGNNCC 2 cut(s) 607, 816
PspPI GGNCC 2 cut(s) 49, 453
PspPPI RGGWCCY 1 cut(s) 453
PstI CTGCAG 1 cut(s) 724
PsuI RGATCY 3 cut(s) 175, 605, 814
RsaI GTAC 2 cut(s) 98, 983
RsaNI GTAC 2 cut(s) 97, 982
SacI GAGCTC 1 cut(s) 201
SaqAI TTAA 1 cut(s) 695
SatI GCNGC 2 cut(s) 192, 421
Sau3AI GATC 4 cut(s) 90, 175, 605, 814
Sau96I GGNCC 2 cut(s) 49, 453
SchI GAGTC 1 cut(s) 998
ScrFI CCNGG 2 cut(s) 363, 515
SduI GDGCHC 2 cut(s) 201, 1094
SfaNI GCATC 5 cut(s) 250, 295, 434, 517, 586
SfcI CTRYAG 2 cut(s) 720, 1072
SfuI TTCGAA 1 cut(s) 535
SinI GGWCC 2 cut(s) 49, 453
SmlI CTYRAG 1 cut(s) 731
SmoI CTYRAG 1 cut(s) 731
Sse9I AATT 8 cut(s) 139, 531, 540, 692, 741, 771, 821, 1151
SsiI CCGC 1 cut(s) 52
SspMI CTAG 3 cut(s) 30, 188, 1162
SstI GAGCTC 1 cut(s) 201
StyD4I CCNGG 2 cut(s) 361, 513
TaaI ACNGT 9 cut(s) 221, 394, 469, 479, 563, 866, 962, 1125, 1145
TaqI TCGA 4 cut(s) 93, 180, 387, 535
TasI AATT 8 cut(s) 139, 531, 540, 692, 741, 771, 821, 1151
TatI WGTACW 2 cut(s) 96, 981
TfiI GAWTC 3 cut(s) 160, 497, 755
Tru1I TTAA 1 cut(s) 695
Tru9I TTAA 1 cut(s) 695
TscAI CASTG 5 cut(s) 226, 282, 379, 587, 1128
TseI GCWGC 2 cut(s) 191, 420
TspDTI ATGAA 5 cut(s) 17, 170, 449, 534, 1044
TspGWI ACGGA 1 cut(s) 93
TspRI CASTG 5 cut(s) 226, 282, 379, 587, 1128
VpaK11BI GGWCC 2 cut(s) 49, 453
XceI RCATGY 2 cut(s) 768, 982
XcmI CCANNNNNNNNNTGG 1 cut(s) 124
XmnI GAANNNNTTC 2 cut(s) 8, 1025
XspI CTAG 3 cut(s) 30, 188, 1162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.