Rorug04G0056200

metal ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000343
Physical Location & Seq
Reverse (-)
8840552 .. 8840943
392 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0056200.1

Sequence Viewer

Length: 270 bp
ATGGCAGGTAATCTAATTTCCGTCATGGTTTACTTAGCCCCAGTGCCAACGTTTTACAGGATTTACAGAAAGAAATCGACTGAGGGTTTCCAATCGGTGCCGTATCTGGTAGCACTGTTTAGTGCCACGCTTTGGCTCTACTATGCCATGCTGAAGCAAAATGCTGTGCTTCTCATCATAATCAACACCTTCCGAAGTGTGATAGAGACTGTACATCGCCATGTATATTGTTTATGCAACAAAGACTTCAAGGGTACGTATGTTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006950 GO:0006952 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009791 GO:0009889 GO:0009893 GO:0009909 GO:0009911 GO:0009987 GO:0010228 GO:0010468 GO:0010556 GO:0010604 GO:0010638 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030154 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031326 GO:0031399 GO:0031401 GO:0031440 GO:0031935 GO:0031937 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0033043 GO:0033044 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043954 GO:0044030 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048468 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050684 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051052 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051276 GO:0051570 GO:0051574 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060968 GO:0061085 GO:0061087 GO:0061458 GO:0065007 GO:0070827 GO:0070828 GO:0070829 GO:0071840 GO:0080090 GO:0090436 GO:0097159 GO:0098542 GO:0099402 GO:0140110 GO:1900109 GO:1900111 GO:1900363 GO:1901363 GO:1902275 GO:1903311 GO:1903506 GO:1905269 GO:2000024 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNMT1-RFD

Protein Analysis

89

Amino Acids

10.28

Weight (kDa)

9.55

Isoelectric Point (pI)

48.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MtN3_slv PF03083 2 - 79 4.7e-22 Sugar efflux transporter for intercellular exchange
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000343)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48090 AT5G48090 AT5G48090 AT5G55390 AT5G55390 AT5G55390
fragaria_vesca FvH4_3g23690 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160
malus_domestica MD03G1191000.v1.1 MD11G1207800.v1.1 MD11G1208000.v1.1
prunus_persica Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227600_v2.0.a1 Prupe.4G227700_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1
pyrus_communis pycom01g03400 pycom03g14420 pycom11g18100 pycom11g18140 pycom11g18150 pycom11g18160
rosa_chinensis RchiOBHm_Chr2g0145981 RchiOBHm_Chr4g0405241 RchiOBHm_Chr4g0405271 RchiOBHm_Chr5g0016201 RchiOBHm_Chr5g0041831 RchiOBHm_Chr5g0041871 RchiOBHm_Chr5g0041881 RchiOBHm_Chr5g0059241
rosa_laevigata RLG00000002117 RLG00000008861 RLG00000008862 RLG00000011000 RLG00000033216 RLG00000034097 RLG00000034101
rosa_multiflora Rmu_sc0000161.1_g000001 Rmu_sc0000861.1_g000040 Rmu_sc0007522.1_g000003 Rmu_sc0009443.1_g000015 Rmu_sc0022129.1_g000001 Rmu_sc0042315.1_g000001
rosa_roxburghii Rroxscaffold_1G00038660 Rroxscaffold_1G00038690 Rroxscaffold_5G00349560 Rroxscaffold_5G00349610 Rroxscaffold_6G00388370 Rroxscaffold_7G00188740
rosa_rugosa Rorug03G0199700 Rorug04G0055400 Rorug04G0055500 Rorug04G0055900 Rorug04G0056000 Rorug04G0056100 Rorug04G0056100 Rorug04G0056200 Rorug05G0195600 Rorug05G0195700 Rorug05G0195800 Rorug05G0195900 Rorug05G0196800 Rorug05G0385000
rosa_samantha Rh4AG129900 Rh4AG130100 Rh4BG124200 Rh4BG124400 Rh4BG124500 Rh4CG137200 Rh4CG137300 Rh4DG123500 Rh4DG123700 Rh5AG280800 Rh5AG281400 Rh5BG286700 Rh5BG287000 Rh5BG397800 Rh5CG318100 Rh5CG318600 Rh5CG421600 Rh5DG132300 Rh5DG132400 Rh5DG295400 Rh5DG295700 Rh7BG475300
rosa_wichuraiana Rw0G001330 Rw0G005730 Rw4G008670 Rw4G010510 Rw4G010540 Rw5G026450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 97
AccB7I CCANNNNNTGG 1 cut(s) 132
AclI AACGTT 1 cut(s) 50
AcuI CTGAAG 1 cut(s) 173
AfaI GTAC 2 cut(s) 213, 256
AfiI CCNNNNNNNGG 1 cut(s) 132
AgsI TTSAA 1 cut(s) 250
Alw26I GTCTC 1 cut(s) 200
BaeI ACNNNNGTAYC 1 cut(s) 246
BanI GGYRCC 1 cut(s) 97
BceAI ACGGC 1 cut(s) 85
BcoDI GTCTC 1 cut(s) 200
BmiI GGNNCC 1 cut(s) 99
BmrI ACTGGG 1 cut(s) 35
BmuI ACTGGG 1 cut(s) 35
BsaAI YACGTR 1 cut(s) 258
Bsc4I CCNNNNNNNGG 1 cut(s) 132
Bse1I ACTGG 1 cut(s) 41
BseLI CCNNNNNNNGG 1 cut(s) 132
BseMII CTCAG 1 cut(s) 72
BseNI ACTGG 1 cut(s) 41
BshNI GGYRCC 1 cut(s) 97
BslI CCNNNNNNNGG 1 cut(s) 132
BsmAI GTCTC 1 cut(s) 200
Bsp1407I TGTACA 1 cut(s) 211
BspCNI CTCAG 1 cut(s) 73
BspLI GGNNCC 1 cut(s) 99
BspT107I GGYRCC 1 cut(s) 97
BsrGI TGTACA 1 cut(s) 211
BsrI ACTGG 1 cut(s) 41
Bst4CI ACNGT 2 cut(s) 117, 211
BstAUI TGTACA 1 cut(s) 211
BstBAI YACGTR 1 cut(s) 258
BstDEI CTNAG 2 cut(s) 34, 81
BstMAI GTCTC 1 cut(s) 200
BstSNI TACGTA 1 cut(s) 258
BtgZI GCGATG 1 cut(s) 200
BtsIMutI CAGTG 2 cut(s) 48, 113
Csp6I GTAC 2 cut(s) 212, 255
CviAII CATG 3 cut(s) 25, 148, 221
CviJI RGCY 2 cut(s) 38, 136
CviKI_1 RGCY 2 cut(s) 38, 136
CviQI GTAC 2 cut(s) 212, 255
DdeI CTNAG 2 cut(s) 34, 81
Eco105I TACGTA 1 cut(s) 258
Eco57I CTGAAG 1 cut(s) 173
FaeI CATG 3 cut(s) 28, 151, 224
FaiI YATR 8 cut(s) 26, 144, 149, 179, 222, 226, 235, 261
FatI CATG 3 cut(s) 24, 147, 220
Hin1II CATG 3 cut(s) 28, 151, 224
Hpy166II GTNNAC 1 cut(s) 31
Hpy188I TCNGA 1 cut(s) 194
Hpy8I GTNNAC 1 cut(s) 31
HpyAV CCTTC 1 cut(s) 199
HpyCH4III ACNGT 2 cut(s) 117, 211
HpyCH4IV ACGT 2 cut(s) 50, 257
HpyCH4V TGCA 1 cut(s) 237
HpyF3I CTNAG 2 cut(s) 34, 81
HpySE526I ACGT 2 cut(s) 50, 257
Hsp92II CATG 3 cut(s) 28, 151, 224
LpnPI CCDG 3 cut(s) 43, 54, 92
MaeII ACGT 2 cut(s) 50, 257
MluCI AATT 1 cut(s) 15
MnlI CCTC 1 cut(s) 76
MseI TTAA 1 cut(s) 268
MslI CAYNNNNRTG 1 cut(s) 219
NlaIII CATG 3 cut(s) 28, 151, 224
NlaIV GGNNCC 1 cut(s) 99
PflMI CCANNNNNTGG 1 cut(s) 132
Ppu21I YACGTR 1 cut(s) 258
Psp1406I AACGTT 1 cut(s) 50
PspN4I GGNNCC 1 cut(s) 99
RsaI GTAC 2 cut(s) 213, 256
RsaNI GTAC 2 cut(s) 212, 255
RseI CAYNNNNRTG 1 cut(s) 219
SaqAI TTAA 1 cut(s) 268
SetI ASST 4 cut(s) 10, 53, 191, 260
SgeI CNNG 9 cut(s) 18, 37, 53, 70, 119, 139, 160, 233, 262
SmiMI CAYNNNNRTG 1 cut(s) 219
SnaBI TACGTA 1 cut(s) 258
Sse9I AATT 1 cut(s) 15
TaaI ACNGT 2 cut(s) 117, 211
TaiI ACGT 2 cut(s) 53, 260
TaqI TCGA 1 cut(s) 77
TasI AATT 1 cut(s) 15
TatI WGTACW 1 cut(s) 211
Tru1I TTAA 1 cut(s) 268
Tru9I TTAA 1 cut(s) 268
TscAI CASTG 2 cut(s) 48, 120
TspGWI ACGGA 1 cut(s) 10
TspRI CASTG 2 cut(s) 48, 120
Van91I CCANNNNNTGG 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.