Rh4BG124400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000343
Physical Location & Seq
Forward (+)
20811415 .. 20811747
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG124400.1

Sequence Viewer

Length: 333 bp
ATGAGCCCACATCCAGCCACTGTGGGCACCCAATTTATCATCAGGTTACCACTGCCATCACCTGCAGTGTCACCACCAATGTGGAAGCCTCCAACGCCGCCACCGGGGCATTCCAGATCCCTAACAAGGATTGAAACACAAACCTCGCAGTTGGGTTTACAAAGGACATCCAAGCATCTAGGCACCAGAGCCTTCATGCAGCCGCCTCCAGCAACACTTCTGGCTCCACCCGTGTCACATCCTCCGTCAGATCTCACCAATAGCCTAACCTCCGACGTCGAACACGCTCACACTCGAACTAGGGTCTCTCGACCCCCAACTCGGATGGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

11.94

Weight (kDa)

11.91

Isoelectric Point (pI)

67.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000343)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48090 AT5G48090 AT5G48090 AT5G55390 AT5G55390 AT5G55390
fragaria_vesca FvH4_3g23690 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160
malus_domestica MD03G1191000.v1.1 MD11G1207800.v1.1 MD11G1208000.v1.1
prunus_persica Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227600_v2.0.a1 Prupe.4G227700_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1
pyrus_communis pycom01g03400 pycom03g14420 pycom11g18100 pycom11g18140 pycom11g18150 pycom11g18160
rosa_chinensis RchiOBHm_Chr2g0145981 RchiOBHm_Chr4g0405241 RchiOBHm_Chr4g0405271 RchiOBHm_Chr5g0016201 RchiOBHm_Chr5g0041831 RchiOBHm_Chr5g0041871 RchiOBHm_Chr5g0041881 RchiOBHm_Chr5g0059241
rosa_laevigata RLG00000002117 RLG00000008861 RLG00000008862 RLG00000011000 RLG00000033216 RLG00000034097 RLG00000034101
rosa_multiflora Rmu_sc0000161.1_g000001 Rmu_sc0000861.1_g000040 Rmu_sc0007522.1_g000003 Rmu_sc0009443.1_g000015 Rmu_sc0022129.1_g000001 Rmu_sc0042315.1_g000001
rosa_roxburghii Rroxscaffold_1G00038660 Rroxscaffold_1G00038690 Rroxscaffold_5G00349560 Rroxscaffold_5G00349610 Rroxscaffold_6G00388370 Rroxscaffold_7G00188740
rosa_rugosa Rorug03G0199700 Rorug04G0055400 Rorug04G0055500 Rorug04G0055900 Rorug04G0056000 Rorug04G0056100 Rorug04G0056100 Rorug04G0056200 Rorug05G0195600 Rorug05G0195700 Rorug05G0195800 Rorug05G0195900 Rorug05G0196800 Rorug05G0385000
rosa_samantha Rh4AG129900 Rh4AG130100 Rh4BG124200 Rh4BG124400 Rh4BG124500 Rh4CG137200 Rh4CG137300 Rh4DG123500 Rh4DG123700 Rh5AG280800 Rh5AG281400 Rh5BG286700 Rh5BG287000 Rh5BG397800 Rh5CG318100 Rh5CG318600 Rh5CG421600 Rh5DG132300 Rh5DG132400 Rh5DG295400 Rh5DG295700 Rh7BG475300
rosa_wichuraiana Rw0G001330 Rw0G005730 Rw4G008670 Rw4G010510 Rw4G010540 Rw5G026450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 70
AatII GACGTC 1 cut(s) 279
Acc36I ACCTGC 1 cut(s) 70
AccB1I GGYRCC 2 cut(s) 26, 182
AciI CCGC 2 cut(s) 98, 203
AclWI GGATC 1 cut(s) 111
AcyI GRCGYC 1 cut(s) 276
AfiI CCNNNNNNNGG 3 cut(s) 104, 126, 321
AgsI TTSAA 1 cut(s) 134
AleI CACNNNNGTG 1 cut(s) 79
Alw26I GTCTC 1 cut(s) 310
AlwI GGATC 1 cut(s) 111
AlwNI CAGNNNCTG 1 cut(s) 20
AoxI GGCC 1 cut(s) 327
ApeKI GCWGC 1 cut(s) 199
AsuC2I CCSGG 1 cut(s) 105
AsuHPI GGTGA 3 cut(s) 51, 63, 247
BaeGI GKGCMC 1 cut(s) 29
BanI GGYRCC 2 cut(s) 26, 182
BanII GRGCYC 1 cut(s) 8
BbvI GCAGC 1 cut(s) 211
BccI CCATC 2 cut(s) 64, 319
BcnI CCSGG 1 cut(s) 105
BcoDI GTCTC 1 cut(s) 310
BfaI CTAG 2 cut(s) 179, 300
BfmI CTRYAG 1 cut(s) 63
BfuAI ACCTGC 1 cut(s) 70
BglI GCCNNNNNGGC 1 cut(s) 106
BglII AGATCT 1 cut(s) 250
BisI GCNGC 3 cut(s) 98, 200, 203
BlsI GCNGC 3 cut(s) 99, 201, 204
Bme1390I CCNGG 1 cut(s) 105
BmiI GGNNCC 3 cut(s) 28, 184, 225
BmrFI CCNGG 1 cut(s) 105
BmsI GCATC 1 cut(s) 184
BpmI CTGGAG 1 cut(s) 192
BpuMI CCSGG 1 cut(s) 105
BsaHI GRCGYC 1 cut(s) 276
BsaI GGTCTC 1 cut(s) 310
BsaJI CCNNGG 1 cut(s) 104
Bsc4I CCNNNNNNNGG 3 cut(s) 104, 126, 321
BseDI CCNNGG 1 cut(s) 104
BseGI GGATG 4 cut(s) 10, 167, 238, 330
BseLI CCNNNNNNNGG 3 cut(s) 104, 126, 321
BseSI GKGCMC 1 cut(s) 29
BseXI GCAGC 1 cut(s) 211
BshFI GGCC 1 cut(s) 329
BshNI GGYRCC 2 cut(s) 26, 182
BsiSI CCGG 1 cut(s) 104
BslI CCNNNNNNNGG 3 cut(s) 104, 126, 321
BsmAI GTCTC 1 cut(s) 310
BsmI GAATGC 1 cut(s) 109
BsnI GGCC 1 cut(s) 329
Bso31I GGTCTC 1 cut(s) 310
Bsp1286I GDGCHC 2 cut(s) 8, 29
Bsp143I GATC 2 cut(s) 116, 250
BspACI CCGC 2 cut(s) 98, 203
BspANI GGCC 1 cut(s) 329
BspLI GGNNCC 3 cut(s) 28, 184, 225
BspMAI CTGCAG 1 cut(s) 67
BspMI ACCTGC 1 cut(s) 70
BspPI GGATC 1 cut(s) 111
BspT107I GGYRCC 2 cut(s) 26, 182
BspTNI GGTCTC 1 cut(s) 310
BssECI CCNNGG 1 cut(s) 104
BssMI GATC 2 cut(s) 116, 250
BssNI GRCGYC 1 cut(s) 276
Bst4CI ACNGT 1 cut(s) 22
BstACI GRCGYC 1 cut(s) 276
BstEII GGTNACC 1 cut(s) 45
BstF5I GGATG 4 cut(s) 10, 167, 238, 330
BstKTI GATC 2 cut(s) 119, 253
BstMAI GTCTC 1 cut(s) 310
BstMBI GATC 2 cut(s) 116, 250
BstMWI GCNNNNNNNGC 2 cut(s) 94, 106
BstPI GGTNACC 1 cut(s) 45
BstSCI CCNGG 1 cut(s) 103
BstSFI CTRYAG 1 cut(s) 63
BstSLI GKGCMC 1 cut(s) 29
BstV1I GCAGC 1 cut(s) 211
BstX2I RGATCY 2 cut(s) 116, 250
BstXI CCANNNNNNTGG 1 cut(s) 81
BstYI RGATCY 2 cut(s) 116, 250
BsuRI GGCC 1 cut(s) 329
BtsCI GGATG 4 cut(s) 10, 167, 238, 330
BtsI GCAGTG 2 cut(s) 50, 72
BtsIMutI CAGTG 3 cut(s) 18, 50, 72
BveI ACCTGC 1 cut(s) 70
CaiI CAGNNNCTG 1 cut(s) 20
CviAII CATG 1 cut(s) 196
CviJI RGCY 8 cut(s) 6, 17, 88, 191, 202, 224, 264, 329
CviKI_1 RGCY 8 cut(s) 6, 17, 88, 191, 202, 224, 264, 329
DpnI GATC 2 cut(s) 118, 252
DpnII GATC 2 cut(s) 116, 250
Eco24I GRGCYC 1 cut(s) 8
Eco31I GGTCTC 1 cut(s) 310
Eco91I GGTNACC 1 cut(s) 45
EcoO65I GGTNACC 1 cut(s) 45
EcoT38I GRGCYC 1 cut(s) 8
FaeI CATG 1 cut(s) 199
FaiI YATR 1 cut(s) 197
FatI CATG 1 cut(s) 195
Fnu4HI GCNGC 3 cut(s) 98, 200, 203
FokI GGATG 2 cut(s) 154, 225
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 3 cut(s) 98, 200, 203
FspBI CTAG 2 cut(s) 179, 300
GluI GCNGC 3 cut(s) 98, 200, 203
GsuI CTGGAG 1 cut(s) 192
HaeIII GGCC 1 cut(s) 329
HapII CCGG 1 cut(s) 104
Hin1I GRCGYC 1 cut(s) 276
Hin1II CATG 1 cut(s) 199
HpaII CCGG 1 cut(s) 104
HphI GGTGA 3 cut(s) 51, 63, 247
Hpy166II GTNNAC 1 cut(s) 158
Hpy188I TCNGA 3 cut(s) 250, 274, 324
Hpy188III TCNNGA 2 cut(s) 114, 309
Hpy8I GTNNAC 1 cut(s) 158
Hpy99I CGWCG 2 cut(s) 278, 281
HpyAV CCTTC 1 cut(s) 202
HpyCH4III ACNGT 1 cut(s) 22
HpyCH4IV ACGT 1 cut(s) 276
HpyCH4V TGCA 2 cut(s) 65, 199
HpyF10VI GCNNNNNNNGC 2 cut(s) 94, 106
HpySE526I ACGT 1 cut(s) 276
Hsp92I GRCGYC 1 cut(s) 276
Hsp92II CATG 1 cut(s) 199
Kzo9I GATC 2 cut(s) 116, 250
LmnI GCTCC 1 cut(s) 229
LpnPI CCDG 8 cut(s) 27, 28, 75, 117, 127, 199, 206, 222
Lsp1109I GCAGC 1 cut(s) 211
LweI GCATC 1 cut(s) 184
MaeI CTAG 2 cut(s) 179, 300
MaeII ACGT 1 cut(s) 276
MaeIII GTNAC 3 cut(s) 45, 69, 234
MalI GATC 2 cut(s) 118, 252
MboI GATC 2 cut(s) 116, 250
MflI RGATCY 2 cut(s) 116, 250
MhlI GDGCHC 2 cut(s) 8, 29
MluCI AATT 1 cut(s) 32
MmeI TCCRAC 2 cut(s) 116, 297
MnlI CCTC 5 cut(s) 99, 154, 216, 252, 280
MslI CAYNNNNRTG 1 cut(s) 79
MspI CCGG 1 cut(s) 104
MspR9I CCNGG 1 cut(s) 105
Mva1269I GAATGC 1 cut(s) 109
MwoI GCNNNNNNNGC 2 cut(s) 94, 106
NciI CCSGG 1 cut(s) 105
NdeII GATC 2 cut(s) 116, 250
NlaIII CATG 1 cut(s) 199
NlaIV GGNNCC 3 cut(s) 28, 184, 225
NmuCI GTSAC 2 cut(s) 69, 234
OliI CACNNNNGTG 1 cut(s) 79
PaqCI CACCTGC 1 cut(s) 70
PctI GAATGC 1 cut(s) 109
PkrI GCNGC 3 cut(s) 99, 201, 204
PspEI GGTNACC 1 cut(s) 45
PspN4I GGNNCC 3 cut(s) 28, 184, 225
PstI CTGCAG 1 cut(s) 67
PstNI CAGNNNCTG 1 cut(s) 20
PsuI RGATCY 2 cut(s) 116, 250
RseI CAYNNNNRTG 1 cut(s) 79
SatI GCNGC 3 cut(s) 98, 200, 203
Sau3AI GATC 2 cut(s) 116, 250
ScrFI CCNGG 1 cut(s) 105
SduI GDGCHC 2 cut(s) 8, 29
SetI ASST 5 cut(s) 47, 64, 146, 272, 279
SfaNI GCATC 1 cut(s) 184
SfcI CTRYAG 1 cut(s) 63
SmiMI CAYNNNNRTG 1 cut(s) 79
Sse9I AATT 1 cut(s) 32
SsiI CCGC 2 cut(s) 98, 203
SspMI CTAG 2 cut(s) 179, 300
StyD4I CCNGG 1 cut(s) 103
TaaI ACNGT 1 cut(s) 22
TaiI ACGT 1 cut(s) 279
TaqI TCGA 3 cut(s) 279, 295, 310
TasI AATT 1 cut(s) 32
TauI GCSGC 2 cut(s) 100, 205
TscAI CASTG 3 cut(s) 25, 57, 72
TseFI GTSAC 2 cut(s) 69, 234
TseI GCWGC 1 cut(s) 199
Tsp45I GTSAC 2 cut(s) 69, 234
TspDTI ATGAA 1 cut(s) 184
TspGWI ACGGA 1 cut(s) 234
TspRI CASTG 3 cut(s) 25, 57, 72
XspI CTAG 2 cut(s) 179, 300
ZraI GACGTC 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.