Rh5BG287000

metal ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000343
Physical Location & Seq
Reverse (-)
36548443 .. 36552131
3689 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG287000.1

Sequence Viewer

Length: 1140 bp
ATGCCTTTAATTAGGGAAGCTGTTAAATGGGAGGAGGCTTTGGCAAAGTCCAAGTTTATAATCAACTTTCTTGAAGAGAGGCCCACAAAGAGGAAACTATCTGATGAGGATATCCAAGTTAGAAAAAAGCCAGGATTGTCCACTGATGACCTATTCGATACGGTTTGTGCTTTTTGTGATAATGGTGGCAACCTTTTGTGTTGTGAAGGGCGATGCCTAAGGTCCTTTCATGCAACTGTAAAGGACGGTGAGGACTTTACTTGTGAATCTCTTGGATTTACCCAGGATGAAGTAGATGCAATTCAAAAAATTGATTTCTACTGCAAGAACTGTCAATATAAACAGCATCAGTGCTATGCTTGTGGGAAGTTAGGATCCTCGGACAAATCTTTAGGTGCTGAGGTCTTCCCCTGCACTTCTGCAAGGTGTGGTCAGTTTTATCATCCTCATTGTATTGCAAAGTTAAGATATCATGAGACCGGAGTTTCTGCAGAAGAACTTGAGAAAAGAATTATGCTGGGGGAATCTTTTACATGTCCAATTCACAAGTGCTGCTTTTGTAAGCAAGGAGAGAATAAGAAGGATCCTGAATTGCAGTTTGCTGTGTGTAGGCGTTGTCCTACATCCTACCACCGTAAATGCTTGCCACGGGACATTTGTTTTGCAAAAGGCAAGGAAGGTGATGAGGAAGACATGGATACAAGAGCTTGGGAAGGTCTATTACCTGACCGTGTGCTAATATATTGCACAAAACATAGAATAGTTAAAGCCTTTGGAACTCCAAGAAGGGACCATGTTAAATTTCCTGATGTCGATGACAATAAAATTTCTGCTGAGAAAAAGACTCTCTGTCAAGAGAAGAAGAGAAGATTAACATCAGAGTCCCTTGTGGTCAGTGAGAATTGTGTGTCCATGCGAAAAAGGCTTTCCTCAGAAGGGTTGCATAAAGAAAAAAATGCTCCTACAACACATAGGCAGAAAATGACTTTAGCTGCAAAAGCTGGGAAGCACAGTAAACTCAAGTCTGCGATAGTCAAACCTTCCTCAAGAAAATCGAGCAGTCCCTCATCTTCCTTGGATTCGGCTAGAGTACTGAGATGCTCTAATGAAACATGCTTCCGCTGCAATAACGCTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006950 GO:0006952 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009791 GO:0009889 GO:0009893 GO:0009909 GO:0009911 GO:0009987 GO:0010228 GO:0010468 GO:0010556 GO:0010604 GO:0010638 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030154 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031326 GO:0031399 GO:0031401 GO:0031440 GO:0031935 GO:0031937 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0033043 GO:0033044 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043954 GO:0044030 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048468 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050684 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051052 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051276 GO:0051570 GO:0051574 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060968 GO:0061085 GO:0061087 GO:0061458 GO:0065007 GO:0070827 GO:0070828 GO:0070829 GO:0071840 GO:0080090 GO:0090436 GO:0097159 GO:0098542 GO:0099402 GO:0140110 GO:1900109 GO:1900111 GO:1900363 GO:1901363 GO:1902275 GO:1903311 GO:1903506 GO:1905269 GO:2000024 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNMT1-RFD

Protein Analysis

379

Amino Acids

42.92

Weight (kDa)

8.84

Isoelectric Point (pI)

44.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD_NSD PF22908 114 - 182 3e-19 Histone-lysine N-methyltransferase NSD-like, PHD zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000343)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48090 AT5G48090 AT5G48090 AT5G55390 AT5G55390 AT5G55390
fragaria_vesca FvH4_3g23690 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160
malus_domestica MD03G1191000.v1.1 MD11G1207800.v1.1 MD11G1208000.v1.1
prunus_persica Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227600_v2.0.a1 Prupe.4G227700_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1
pyrus_communis pycom01g03400 pycom03g14420 pycom11g18100 pycom11g18140 pycom11g18150 pycom11g18160
rosa_chinensis RchiOBHm_Chr2g0145981 RchiOBHm_Chr4g0405241 RchiOBHm_Chr4g0405271 RchiOBHm_Chr5g0016201 RchiOBHm_Chr5g0041831 RchiOBHm_Chr5g0041871 RchiOBHm_Chr5g0041881 RchiOBHm_Chr5g0059241
rosa_laevigata RLG00000002117 RLG00000008861 RLG00000008862 RLG00000011000 RLG00000033216 RLG00000034097 RLG00000034101
rosa_multiflora Rmu_sc0000161.1_g000001 Rmu_sc0000861.1_g000040 Rmu_sc0007522.1_g000003 Rmu_sc0009443.1_g000015 Rmu_sc0022129.1_g000001 Rmu_sc0042315.1_g000001
rosa_roxburghii Rroxscaffold_1G00038660 Rroxscaffold_1G00038690 Rroxscaffold_5G00349560 Rroxscaffold_5G00349610 Rroxscaffold_6G00388370 Rroxscaffold_7G00188740
rosa_rugosa Rorug03G0199700 Rorug04G0055400 Rorug04G0055500 Rorug04G0055900 Rorug04G0056000 Rorug04G0056100 Rorug04G0056100 Rorug04G0056200 Rorug05G0195600 Rorug05G0195700 Rorug05G0195800 Rorug05G0195900 Rorug05G0196800 Rorug05G0385000
rosa_samantha Rh4AG129900 Rh4AG130100 Rh4BG124200 Rh4BG124400 Rh4BG124500 Rh4CG137200 Rh4CG137300 Rh4DG123500 Rh4DG123700 Rh5AG280800 Rh5AG281400 Rh5BG286700 Rh5BG287000 Rh5BG397800 Rh5CG318100 Rh5CG318600 Rh5CG421600 Rh5DG132300 Rh5DG132400 Rh5DG295400 Rh5DG295700 Rh7BG475300
rosa_wichuraiana Rw0G001330 Rw0G005730 Rw4G008670 Rw4G010510 Rw4G010540 Rw5G026450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 59
AciI CCGC 1 cut(s) 1120
AclWI GGATC 4 cut(s) 369, 382, 578, 591
AcsI RAATTY 2 cut(s) 800, 825
AfaI GTAC 1 cut(s) 1092
AfiI CCNNNNNNNGG 2 cut(s) 90, 936
AflIII ACRYGT 1 cut(s) 533
AgsI TTSAA 2 cut(s) 74, 305
AhdI GACNNNNNGTC 1 cut(s) 849
AjnI CCWGG 2 cut(s) 130, 282
AluBI AGCT 4 cut(s) 20, 707, 992, 1001
AluI AGCT 4 cut(s) 20, 707, 992, 1001
Alw26I GTCTC 1 cut(s) 470
AlwI GGATC 4 cut(s) 369, 382, 578, 591
AoxI GGCC 1 cut(s) 80
ApeKI GCWGC 3 cut(s) 552, 992, 1122
ApoI RAATTY 2 cut(s) 800, 825
ArsI GACNNNNNNTTYG 2 cut(s) 644, 676
AspS9I GGNCC 3 cut(s) 81, 222, 790
AsuHPI GGTGA 2 cut(s) 260, 692
AvaII GGWCC 2 cut(s) 222, 790
AxyI CCTNAGG 1 cut(s) 218
BamHI GGATCC 2 cut(s) 374, 583
BarI GAAGNNNNNNTAC 2 cut(s) 705, 737
BbsI GAAGAC 2 cut(s) 397, 696
BbvCI CCTCAGC 1 cut(s) 399
BbvI GCAGC 3 cut(s) 539, 979, 1109
BciT130I CCWGG 2 cut(s) 132, 284
BciVI GTATCC 1 cut(s) 691
BcoDI GTCTC 1 cut(s) 470
BfaI CTAG 1 cut(s) 1086
BfmI CTRYAG 1 cut(s) 489
BfuI GTATCC 1 cut(s) 691
BisI GCNGC 3 cut(s) 553, 993, 1123
BlsI GCNGC 3 cut(s) 554, 994, 1124
BmcAI AGTACT 1 cut(s) 1092
Bme1390I CCNGG 2 cut(s) 132, 284
Bme18I GGWCC 2 cut(s) 222, 790
BmeRI GACNNNNNGTC 1 cut(s) 849
BmgT120I GGNCC 3 cut(s) 81, 222, 790
BmiI GGNNCC 3 cut(s) 376, 585, 791
BmrFI CCNGG 2 cut(s) 132, 284
BmsI GCATC 4 cut(s) 203, 286, 355, 1088
BpiI GAAGAC 2 cut(s) 397, 696
Bpu10I CCTNAGC 1 cut(s) 399
BpuEI CTTGAG 3 cut(s) 521, 1004, 1030
BsaBI GATNNNNATC 1 cut(s) 874
BsaI GGTCTC 1 cut(s) 470
BsaJI CCNNGG 4 cut(s) 282, 378, 647, 1074
BsaWI WCCGGW 1 cut(s) 479
Bsc4I CCNNNNNNNGG 2 cut(s) 90, 936
Bse21I CCTNAGG 1 cut(s) 218
Bse8I GATNNNNATC 1 cut(s) 874
BseBI CCWGG 2 cut(s) 132, 284
BseDI CCNNGG 4 cut(s) 282, 378, 647, 1074
BseGI GGATG 3 cut(s) 292, 442, 623
BseJI GATNNNNATC 1 cut(s) 874
BseLI CCNNNNNNNGG 2 cut(s) 90, 936
BseMII CTCAG 4 cut(s) 390, 825, 945, 1085
BseRI GAGGAG 1 cut(s) 47
BseXI GCAGC 3 cut(s) 539, 979, 1109
BseYI CCCAGC 2 cut(s) 517, 1001
BsgI GTGCAG 1 cut(s) 397
BshFI GGCC 1 cut(s) 82
BsiSI CCGG 1 cut(s) 480
BslFI GGGAC 4 cut(s) 665, 803, 868, 1047
BslI CCNNNNNNNGG 2 cut(s) 90, 936
BsmAI GTCTC 1 cut(s) 470
BsmFI GGGAC 4 cut(s) 665, 803, 868, 1047
BsnI GGCC 1 cut(s) 82
Bso31I GGTCTC 1 cut(s) 470
Bsp143I GATC 2 cut(s) 374, 583
BspACI CCGC 1 cut(s) 1120
BspANI GGCC 1 cut(s) 82
BspCNI CTCAG 4 cut(s) 391, 826, 944, 1086
BspHI TCATGA 1 cut(s) 472
BspLI GGNNCC 3 cut(s) 376, 585, 791
BspMAI CTGCAG 1 cut(s) 493
BspPI GGATC 4 cut(s) 369, 382, 578, 591
BspTNI GGTCTC 1 cut(s) 470
BssECI CCNNGG 4 cut(s) 282, 378, 647, 1074
BssMI GATC 2 cut(s) 374, 583
BssT1I CCWWGG 1 cut(s) 1074
Bst2UI CCWGG 2 cut(s) 132, 284
Bst4CI ACNGT 7 cut(s) 163, 238, 248, 332, 635, 731, 1013
Bst6I CTCTTC 2 cut(s) 69, 857
BstC8I GCNNGC 1 cut(s) 644
BstDEI CTNAG 5 cut(s) 218, 399, 834, 931, 1094
BstDSI CCRYGG 1 cut(s) 647
BstF5I GGATG 3 cut(s) 292, 442, 623
BstKTI GATC 2 cut(s) 377, 586
BstMAI GTCTC 1 cut(s) 470
BstMBI GATC 2 cut(s) 374, 583
BstMWI GCNNNNNNNGC 3 cut(s) 922, 998, 1122
BstNI CCWGG 2 cut(s) 132, 284
BstNSI RCATGY 2 cut(s) 537, 1116
BstSCI CCNGG 2 cut(s) 130, 282
BstSFI CTRYAG 1 cut(s) 489
BstV1I GCAGC 3 cut(s) 539, 979, 1109
BstV2I GAAGAC 2 cut(s) 397, 696
BstX2I RGATCY 2 cut(s) 374, 583
BstYI RGATCY 2 cut(s) 374, 583
Bsu36I CCTNAGG 1 cut(s) 218
BsuI GTATCC 1 cut(s) 691
BsuRI GGCC 1 cut(s) 82
BtgI CCRYGG 1 cut(s) 647
BtgZI GCGATG 1 cut(s) 226
BtsCI GGATG 3 cut(s) 292, 442, 623
BtsIMutI CAGTG 3 cut(s) 141, 356, 901
Cac8I GCNNGC 1 cut(s) 644
CciI TCATGA 1 cut(s) 472
Cfr13I GGNCC 3 cut(s) 81, 222, 790
Csp6I GTAC 1 cut(s) 1091
CviAII CATG 7 cut(s) 230, 473, 534, 694, 794, 913, 1113
CviQI GTAC 1 cut(s) 1091
DdeI CTNAG 5 cut(s) 218, 399, 834, 931, 1094
DpnI GATC 2 cut(s) 376, 585
DpnII GATC 2 cut(s) 374, 583
DriI GACNNNNNGTC 1 cut(s) 849
Eam1104I CTCTTC 2 cut(s) 69, 857
Eam1105I GACNNNNNGTC 1 cut(s) 849
EarI CTCTTC 2 cut(s) 69, 857
Eco130I CCWWGG 1 cut(s) 1074
Eco31I GGTCTC 1 cut(s) 470
Eco32I GATATC 2 cut(s) 112, 470
Eco47I GGWCC 2 cut(s) 222, 790
Eco81I CCTNAGG 1 cut(s) 218
EcoO109I RGGNCCY 1 cut(s) 222
EcoRII CCWGG 2 cut(s) 130, 282
EcoRV GATATC 2 cut(s) 112, 470
EcoT14I CCWWGG 1 cut(s) 1074
ErhI CCWWGG 1 cut(s) 1074
FaeI CATG 7 cut(s) 233, 476, 537, 697, 797, 916, 1116
FalI AAGNNNNNCTT 2 cut(s) 539, 571
FaqI GGGAC 4 cut(s) 665, 803, 868, 1047
FatI CATG 7 cut(s) 229, 472, 533, 693, 793, 912, 1112
Fnu4HI GCNGC 3 cut(s) 553, 993, 1123
FokI GGATG 3 cut(s) 299, 429, 610
Fsp4HI GCNGC 3 cut(s) 553, 993, 1123
FspBI CTAG 1 cut(s) 1086
GluI GCNGC 3 cut(s) 553, 993, 1123
GsaI CCCAGC 2 cut(s) 521, 1005
HaeIII GGCC 1 cut(s) 82
HapII CCGG 1 cut(s) 480
Hin1II CATG 7 cut(s) 233, 476, 537, 697, 797, 916, 1116
HinfI GANTC 5 cut(s) 266, 524, 844, 881, 1079
HpaII CCGG 1 cut(s) 480
HphI GGTGA 2 cut(s) 260, 692
Hpy166II GTNNAC 2 cut(s) 141, 1016
Hpy188I TCNGA 4 cut(s) 103, 382, 880, 934
Hpy188III TCNNGA 6 cut(s) 71, 473, 587, 806, 854, 1047
Hpy8I GTNNAC 2 cut(s) 141, 1016
HpyAV CCTTC 7 cut(s) 200, 574, 671, 707, 780, 929, 1050
HpyCH4III ACNGT 7 cut(s) 163, 238, 248, 332, 635, 731, 1013
HpyF10VI GCNNNNNNNGC 3 cut(s) 922, 998, 1122
HpyF3I CTNAG 5 cut(s) 218, 399, 834, 931, 1094
Hsp92II CATG 7 cut(s) 233, 476, 537, 697, 797, 916, 1116
Kzo9I GATC 2 cut(s) 374, 583
LmnI GCTCC 1 cut(s) 964
Lsp1109I GCAGC 3 cut(s) 539, 979, 1109
LweI GCATC 4 cut(s) 203, 286, 355, 1088
MaeI CTAG 1 cut(s) 1086
MalI GATC 2 cut(s) 376, 585
MboI GATC 2 cut(s) 374, 583
MboII GAAGA 8 cut(s) 86, 397, 506, 701, 871, 874, 879, 1062
MflI RGATCY 2 cut(s) 374, 583
MluCI AATT 9 cut(s) 9, 300, 309, 510, 540, 590, 800, 825, 901
MlyI GAGTC 2 cut(s) 838, 890
MseI TTAA 6 cut(s) 8, 24, 464, 765, 798, 872
MspA1I CMGCKG 1 cut(s) 1122
MspI CCGG 1 cut(s) 480
MspR9I CCNGG 2 cut(s) 132, 284
MvaI CCWGG 2 cut(s) 132, 284
MwoI GCNNNNNNNGC 3 cut(s) 922, 998, 1122
NdeII GATC 2 cut(s) 374, 583
NlaIII CATG 7 cut(s) 233, 476, 537, 697, 797, 916, 1116
NlaIV GGNNCC 3 cut(s) 376, 585, 791
NspI RCATGY 2 cut(s) 537, 1116
PagI TCATGA 1 cut(s) 472
PciI ACATGT 1 cut(s) 533
PfeI GAWTC 3 cut(s) 266, 524, 1079
PkrI GCNGC 3 cut(s) 554, 994, 1124
PleI GAGTC 2 cut(s) 838, 889
PpsI GAGTC 2 cut(s) 838, 889
PpuMI RGGWCCY 1 cut(s) 222
PscI ACATGT 1 cut(s) 533
PsiI TTATAA 1 cut(s) 59
Psp5II RGGWCCY 1 cut(s) 222
Psp6I CCWGG 2 cut(s) 130, 282
PspFI CCCAGC 2 cut(s) 517, 1001
PspGI CCWGG 2 cut(s) 130, 282
PspN4I GGNNCC 3 cut(s) 376, 585, 791
PspPI GGNCC 3 cut(s) 81, 222, 790
PspPPI RGGWCCY 1 cut(s) 222
PstI CTGCAG 1 cut(s) 493
PsuI RGATCY 2 cut(s) 374, 583
RsaI GTAC 1 cut(s) 1092
RsaNI GTAC 1 cut(s) 1091
SaqAI TTAA 6 cut(s) 8, 24, 464, 765, 798, 872
SatI GCNGC 3 cut(s) 553, 993, 1123
Sau3AI GATC 2 cut(s) 374, 583
Sau96I GGNCC 3 cut(s) 81, 222, 790
ScaI AGTACT 1 cut(s) 1092
SchI GAGTC 2 cut(s) 838, 890
ScrFI CCNGG 2 cut(s) 132, 284
SfaNI GCATC 4 cut(s) 203, 286, 355, 1088
SfcI CTRYAG 1 cut(s) 489
SinI GGWCC 2 cut(s) 222, 790
SmlI CTYRAG 3 cut(s) 500, 1019, 1045
SmoI CTYRAG 3 cut(s) 500, 1019, 1045
Sse9I AATT 9 cut(s) 9, 300, 309, 510, 540, 590, 800, 825, 901
SsiI CCGC 1 cut(s) 1120
SspMI CTAG 1 cut(s) 1086
StyD4I CCNGG 2 cut(s) 130, 282
StyI CCWWGG 1 cut(s) 1074
TaaI ACNGT 7 cut(s) 163, 238, 248, 332, 635, 731, 1013
TaqI TCGA 3 cut(s) 156, 813, 1055
TasI AATT 9 cut(s) 9, 300, 309, 510, 540, 590, 800, 825, 901
TatI WGTACW 1 cut(s) 1090
TfiI GAWTC 3 cut(s) 266, 524, 1079
Tru1I TTAA 6 cut(s) 8, 24, 464, 765, 798, 872
Tru9I TTAA 6 cut(s) 8, 24, 464, 765, 798, 872
TscAI CASTG 3 cut(s) 148, 356, 901
TseI GCWGC 3 cut(s) 552, 992, 1122
TspDTI ATGAA 3 cut(s) 218, 303, 1122
TspRI CASTG 3 cut(s) 148, 356, 901
VpaK11BI GGWCC 2 cut(s) 222, 790
XapI RAATTY 2 cut(s) 800, 825
XceI RCATGY 2 cut(s) 537, 1116
XspI CTAG 1 cut(s) 1086
ZrmI AGTACT 1 cut(s) 1092
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.