RchiOBHm_Chr5g0041881

metal ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000343
Physical Location & Seq
Reverse (-)
36760572 .. 36761541
970 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32030

Sequence Viewer

Length: 201 bp
ATGGCATTTTTTGATAATGAGGCAGAGCCTCTGCCTGTGACAAATTATTATTTCGAAGATGACAAGAATGAACCTATCTCGTTTCATGTTTTGCCAATTGAATGGAGTAAGGATAAGAGACAGAATGGGAAGAAAGAACTCATATATTTGCGCGGCATTGCCGATAATGGGCTTCCGACCATACATAGAGAGCTGTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006950 GO:0006952 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009791 GO:0009889 GO:0009893 GO:0009909 GO:0009911 GO:0009987 GO:0010228 GO:0010468 GO:0010556 GO:0010604 GO:0010638 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030154 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031326 GO:0031399 GO:0031401 GO:0031440 GO:0031935 GO:0031937 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0033043 GO:0033044 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043954 GO:0044030 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048468 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050684 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051052 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051276 GO:0051570 GO:0051574 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060968 GO:0061085 GO:0061087 GO:0061458 GO:0065007 GO:0070827 GO:0070828 GO:0070829 GO:0071840 GO:0080090 GO:0090436 GO:0097159 GO:0098542 GO:0099402 GO:0140110 GO:1900109 GO:1900111 GO:1900363 GO:1901363 GO:1902275 GO:1903311 GO:1903506 GO:1905269 GO:2000024 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNMT1-RFD

Protein Analysis

66

Amino Acids

7.78

Weight (kDa)

4.97

Isoelectric Point (pI)

37.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000343)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48090 AT5G48090 AT5G48090 AT5G55390 AT5G55390 AT5G55390
fragaria_vesca FvH4_3g23690 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160
malus_domestica MD03G1191000.v1.1 MD11G1207800.v1.1 MD11G1208000.v1.1
prunus_persica Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227600_v2.0.a1 Prupe.4G227700_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1
pyrus_communis pycom01g03400 pycom03g14420 pycom11g18100 pycom11g18140 pycom11g18150 pycom11g18160
rosa_chinensis RchiOBHm_Chr2g0145981 RchiOBHm_Chr4g0405241 RchiOBHm_Chr4g0405271 RchiOBHm_Chr5g0016201 RchiOBHm_Chr5g0041831 RchiOBHm_Chr5g0041871 RchiOBHm_Chr5g0041881 RchiOBHm_Chr5g0059241
rosa_laevigata RLG00000002117 RLG00000008861 RLG00000008862 RLG00000011000 RLG00000033216 RLG00000034097 RLG00000034101
rosa_multiflora Rmu_sc0000161.1_g000001 Rmu_sc0000861.1_g000040 Rmu_sc0007522.1_g000003 Rmu_sc0009443.1_g000015 Rmu_sc0022129.1_g000001 Rmu_sc0042315.1_g000001
rosa_roxburghii Rroxscaffold_1G00038660 Rroxscaffold_1G00038690 Rroxscaffold_5G00349560 Rroxscaffold_5G00349610 Rroxscaffold_6G00388370 Rroxscaffold_7G00188740
rosa_rugosa Rorug03G0199700 Rorug04G0055400 Rorug04G0055500 Rorug04G0055900 Rorug04G0056000 Rorug04G0056100 Rorug04G0056100 Rorug04G0056200 Rorug05G0195600 Rorug05G0195700 Rorug05G0195800 Rorug05G0195900 Rorug05G0196800 Rorug05G0385000
rosa_samantha Rh4AG129900 Rh4AG130100 Rh4BG124200 Rh4BG124400 Rh4BG124500 Rh4CG137200 Rh4CG137300 Rh4DG123500 Rh4DG123700 Rh5AG280800 Rh5AG281400 Rh5BG286700 Rh5BG287000 Rh5BG397800 Rh5CG318100 Rh5CG318600 Rh5CG421600 Rh5DG132300 Rh5DG132400 Rh5DG295400 Rh5DG295700 Rh7BG475300
rosa_wichuraiana Rw0G001330 Rw0G005730 Rw4G008670 Rw4G010510 Rw4G010540 Rw5G026450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 153
AciI CCGC 1 cut(s) 153
AfiI CCNNNNNNNGG 1 cut(s) 168
AgsI TTSAA 1 cut(s) 101
AluBI AGCT 1 cut(s) 193
AluI AGCT 1 cut(s) 193
Alw26I GTCTC 1 cut(s) 112
AspLEI GCGC 1 cut(s) 153
AsuII TTCGAA 1 cut(s) 54
BcoDI GTCTC 1 cut(s) 112
BisI GCNGC 1 cut(s) 154
BlsI GCNGC 1 cut(s) 155
Bpu14I TTCGAA 1 cut(s) 54
Bsc4I CCNNNNNNNGG 1 cut(s) 168
Bse3DI GCAATG 1 cut(s) 156
BseLI CCNNNNNNNGG 1 cut(s) 168
BseMI GCAATG 1 cut(s) 156
Bsh1236I CGCG 1 cut(s) 153
BslI CCNNNNNNNGG 1 cut(s) 168
BsmAI GTCTC 1 cut(s) 112
Bsp119I TTCGAA 1 cut(s) 54
BspACI CCGC 1 cut(s) 153
BspFNI CGCG 1 cut(s) 153
BspT104I TTCGAA 1 cut(s) 54
BsrDI GCAATG 1 cut(s) 156
BstBI TTCGAA 1 cut(s) 54
BstFNI CGCG 1 cut(s) 153
BstHHI GCGC 1 cut(s) 153
BstMAI GTCTC 1 cut(s) 112
BstUI CGCG 1 cut(s) 153
BstXI CCANNNNNNTGG 1 cut(s) 102
CfoI GCGC 1 cut(s) 153
CviAII CATG 1 cut(s) 86
CviJI RGCY 3 cut(s) 28, 172, 193
CviKI_1 RGCY 3 cut(s) 28, 172, 193
FaeI CATG 1 cut(s) 89
FaiI YATR 6 cut(s) 87, 143, 145, 182, 186, 199
FatI CATG 1 cut(s) 85
Fnu4HI GCNGC 1 cut(s) 154
Fsp4HI GCNGC 1 cut(s) 154
GlaI GCGC 1 cut(s) 152
GluI GCNGC 1 cut(s) 154
HhaI GCGC 1 cut(s) 153
Hin1II CATG 1 cut(s) 89
Hin6I GCGC 1 cut(s) 151
HinP1I GCGC 1 cut(s) 151
Hpy188I TCNGA 1 cut(s) 177
Hsp92II CATG 1 cut(s) 89
HspAI GCGC 1 cut(s) 151
LpnPI CCDG 1 cut(s) 48
MaeIII GTNAC 1 cut(s) 37
MboII GAAGA 2 cut(s) 68, 142
MfeI CAATTG 1 cut(s) 96
MluCI AATT 2 cut(s) 43, 96
MmeI TCCRAC 1 cut(s) 200
MnlI CCTC 2 cut(s) 13, 39
MunI CAATTG 1 cut(s) 96
MvnI CGCG 1 cut(s) 153
NlaIII CATG 1 cut(s) 89
NmuCI GTSAC 1 cut(s) 37
NspV TTCGAA 1 cut(s) 54
PkrI GCNGC 1 cut(s) 155
SatI GCNGC 1 cut(s) 154
SetI ASST 2 cut(s) 76, 195
SfuI TTCGAA 1 cut(s) 54
SgeI CNNG 5 cut(s) 47, 76, 91, 98, 164
Sse9I AATT 2 cut(s) 43, 96
SsiI CCGC 1 cut(s) 153
TaqI TCGA 1 cut(s) 54
TasI AATT 2 cut(s) 43, 96
TauI GCSGC 1 cut(s) 156
TseFI GTSAC 1 cut(s) 37
Tsp45I GTSAC 1 cut(s) 37
TspDTI ATGAA 2 cut(s) 74, 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.