RchiOBHm_Chr4g0405241

metal ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000343
Physical Location & Seq
Forward (+)
25433493 .. 25443771
10279 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37674

Sequence Viewer

Length: 1959 bp
ATGGAGGCTGCCAACAACAGCCCCGGAATCAGAGAAGAAGGCGAGCTCTCTCCCGACGACGCTGACGACATTCAAGTTACTAAAAGGCTCAAATCTGTGGTTGATGATACGATTGATGATGCTGAAGATGAGTTCATTGACATTGATTATATGTTTGGCTATGTCTGCGCTTTGTGTCATGATGGCGGTGACCTCTTGTGTTGTGAAGGGAGGTGCCTAAGGTCATTTCATGCAACTCCAGAGACTGGTCAGGACTCTGGTTGCGTATCTCTTGGCTTTACGAAGGATGCAGTAGATGCAATGCCTAATTTCTTATGCCAGAACTGCAAATACAAACAACACCAGTGCTTTGTTTGTGGAGAGTTGGGATCTTCAGACAAATCTTCAGGTGCTGCTGAGGTTGTTCCCTGTGTTTCTCCGGTATGTGGTCAATTCTACCATCCACATTGTGTTGCAAAAGAACTTTCTCAAGATAATGGAGTTCCTGCTGAAGAACTTGAGAAAAAGATTACAATGGGAGAATCTTTTACATGTCCAGTTCATAAGTGCCGCGTTTGTAAACAAGGAGAAAATATTAAGGATCACGGTTTACAATTTGCTGTGTGCATGCTCTGTCCCAAGTCATACCACAGGAAATGCCTGCCAAGTTTTATTCCTTTTGAAGACGAAGGAACATGTGGTGAAGGAAAATTAGTAACAAGAGCTTGGGACGGAATAATGCCTAACCGTATACTAATATATTGCATAAAACACGAGGAAGATAAAACAACTAAACTTTTTGTAAGGGACCACATAAAATTTCCTGCTGTTAAAGAGAAGAGGAAACTGACACCACAGTCTATTGTAGACAGAAAGCAAGTTGCGTCTATGATGATAAATCCTTCATTGGAAGAATCATACAGAGAAAGAACTGCAAACACAGAATTCAAACAGAAGGAGAAACCATCTTTTGCTAGAAAGCGTGGAAATTTGGATGCACCTAATACAGATACAAAAAGGAGAATATTGGGCTTAATGGAGAAGGCTGCATCTTCAATAACCTTGAAAGATATATTAAGGAAGTACCCAGTTCCATCTCATACTTACTCCATCAAAAATGTTGTGGACACGAAAATGTCATTGGGAAAGGTGGAAGTCTCGATTGAGGCCGCTAGAACAGCATTGAGAAAACTAGATGAAGGGTGCAGTACCAAAGATGCAGAAGCTGTTTGTGGGCCTGAGGTTCTTAAACAGATATTTAGATGGAAGACAAAGATGAATGTTTATCTCGGTCCTTTCCTTCATGGCATGCGCTACACATCCTTTGGTCGTCATTTTACGAACGTGGAGAAACTAAAACAGATTGTAGATAAGCTCCACTGGTATGTGAAGACCGGAGATATGATTGTGGACTTTTGCTGTGGTGCTAATGACTTCAGTGTCATTATGAAAAAAAAGCTTGAAGAGACGGGAAAGAATTGCTACTACAAGAACTATGACCTTTTTCAAGCTAAGAATGATTTTAATTTCGAAAAGAAGGATTGGATGACTGTCCAGAGAGAGGAGTTACCCATGGGATCTCGGTTGATCATGGGGCTGAACCCTCCTTTTGGAGTTAAAGCATCTCGGGCGAACCAGTTCATTGATAAGGCTCTCGGGTTTAATCCAAAGCTCCTAATTCTTATTGTTCCATCAGAAACACAAAGGCTGGATCAGAAGGCATCACCTTATGATCTGATTTGGGAGAATTCTCAGCTTCTATCAGGAAAGTCATTTTATCTACCTGGATCAGTTGATGTGAATGGTAAACATATAGACCAGCATAATGTGATTCCACCTCCTCTCTATCTCTGGAGTCGTCCTGATTGGTCTTCGGAACACTATGCTATAGCTCAAGAGCATGGTCACATTTCTATACCCCAGTCAGCAACGATTGAGAACAGCAGCACTCATTTTGAAGACCGAATCAGGGTGCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006950 GO:0006952 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009791 GO:0009889 GO:0009893 GO:0009909 GO:0009911 GO:0009987 GO:0010228 GO:0010468 GO:0010556 GO:0010604 GO:0010638 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030154 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031326 GO:0031399 GO:0031401 GO:0031440 GO:0031935 GO:0031937 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0033043 GO:0033044 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043954 GO:0044030 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048468 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050684 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051052 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051276 GO:0051570 GO:0051574 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060968 GO:0061085 GO:0061087 GO:0061458 GO:0065007 GO:0070827 GO:0070828 GO:0070829 GO:0071840 GO:0080090 GO:0090436 GO:0097159 GO:0098542 GO:0099402 GO:0140110 GO:1900109 GO:1900111 GO:1900363 GO:1901363 GO:1902275 GO:1903311 GO:1903506 GO:1905269 GO:2000024 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNMT1-RFD

Protein Analysis

652

Amino Acids

73.77

Weight (kDa)

6.86

Isoelectric Point (pI)

41.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD_NSD PF22908 112 - 181 1.8e-18 Histone-lysine N-methyltransferase NSD-like, PHD zinc finger
Mtase_EDM2 PF26055 455 - 625 1.6e-90 EDM2 methyltransferase-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000343)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48090 AT5G48090 AT5G48090 AT5G55390 AT5G55390 AT5G55390
fragaria_vesca FvH4_3g23690 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160
malus_domestica MD03G1191000.v1.1 MD11G1207800.v1.1 MD11G1208000.v1.1
prunus_persica Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227600_v2.0.a1 Prupe.4G227700_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1
pyrus_communis pycom01g03400 pycom03g14420 pycom11g18100 pycom11g18140 pycom11g18150 pycom11g18160
rosa_chinensis RchiOBHm_Chr2g0145981 RchiOBHm_Chr4g0405241 RchiOBHm_Chr4g0405271 RchiOBHm_Chr5g0016201 RchiOBHm_Chr5g0041831 RchiOBHm_Chr5g0041871 RchiOBHm_Chr5g0041881 RchiOBHm_Chr5g0059241
rosa_laevigata RLG00000002117 RLG00000008861 RLG00000008862 RLG00000011000 RLG00000033216 RLG00000034097 RLG00000034101
rosa_multiflora Rmu_sc0000161.1_g000001 Rmu_sc0000861.1_g000040 Rmu_sc0007522.1_g000003 Rmu_sc0009443.1_g000015 Rmu_sc0022129.1_g000001 Rmu_sc0042315.1_g000001
rosa_roxburghii Rroxscaffold_1G00038660 Rroxscaffold_1G00038690 Rroxscaffold_5G00349560 Rroxscaffold_5G00349610 Rroxscaffold_6G00388370 Rroxscaffold_7G00188740
rosa_rugosa Rorug03G0199700 Rorug04G0055400 Rorug04G0055500 Rorug04G0055900 Rorug04G0056000 Rorug04G0056100 Rorug04G0056100 Rorug04G0056200 Rorug05G0195600 Rorug05G0195700 Rorug05G0195800 Rorug05G0195900 Rorug05G0196800 Rorug05G0385000
rosa_samantha Rh4AG129900 Rh4AG130100 Rh4BG124200 Rh4BG124400 Rh4BG124500 Rh4CG137200 Rh4CG137300 Rh4DG123500 Rh4DG123700 Rh5AG280800 Rh5AG281400 Rh5BG286700 Rh5BG287000 Rh5BG397800 Rh5CG318100 Rh5CG318600 Rh5CG421600 Rh5DG132300 Rh5DG132400 Rh5DG295400 Rh5DG295700 Rh7BG475300
rosa_wichuraiana Rw0G001330 Rw0G005730 Rw4G008670 Rw4G010510 Rw4G010540 Rw5G026450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 835, 1418
AccB1I GGYRCC 1 cut(s) 213
AccB7I CCANNNNNTGG 1 cut(s) 245
AccI GTMKAC 2 cut(s) 730, 846
AccII CGCG 1 cut(s) 552
AciI CCGC 3 cut(s) 186, 550, 1149
AclWI GGATC 5 cut(s) 376, 588, 1564, 1698, 1774
AcsI RAATTY 4 cut(s) 797, 923, 967, 1726
AcuI CTGAAG 5 cut(s) 144, 357, 369, 510, 1399
AdeI CACNNNGTG 1 cut(s) 449
AfaI GTAC 2 cut(s) 1064, 1189
AfiI CCNNNNNNNGG 5 cut(s) 245, 425, 1540, 1589, 1948
AflIII ACRYGT 2 cut(s) 530, 674
AgsI TTSAA 8 cut(s) 74, 662, 928, 1035, 1045, 1442, 1487, 1937
AjnI CCWGG 1 cut(s) 1762
AjuI GAANNNNNNNTTGG 2 cut(s) 1103, 1135
AluBI AGCT 9 cut(s) 46, 704, 1205, 1354, 1438, 1490, 1651, 1735, 1871
AluI AGCT 9 cut(s) 46, 704, 1205, 1354, 1438, 1490, 1651, 1735, 1871
Alw21I GWGCWC 2 cut(s) 48, 1956
Alw26I GTCTC 3 cut(s) 236, 1141, 1439
Alw44I GTGCAC 1 cut(s) 1952
AlwI GGATC 5 cut(s) 376, 588, 1564, 1698, 1774
AlwNI CAGNNNCTG 3 cut(s) 245, 392, 1205
Ama87I CYCGRG 2 cut(s) 1605, 1634
AoxI GGCC 2 cut(s) 1146, 1214
ApaLI GTGCAC 1 cut(s) 1952
ApeKI GCWGC 4 cut(s) 8, 392, 1025, 1923
ApoI RAATTY 4 cut(s) 797, 923, 967, 1726
Asp700I GAANNNNTTC 1 cut(s) 1616
AspLEI GCGC 2 cut(s) 170, 1293
AspS9I GGNCC 3 cut(s) 787, 1214, 1271
AsuC2I CCSGG 1 cut(s) 24
AsuHPI GGTGA 3 cut(s) 200, 692, 1695
AsuII TTCGAA 1 cut(s) 1509
AvaI CYCGRG 2 cut(s) 1605, 1634
AvaII GGWCC 2 cut(s) 787, 1271
AxyI CCTNAGG 2 cut(s) 218, 1218
BaeGI GKGCMC 1 cut(s) 1956
BanI GGYRCC 1 cut(s) 213
BanII GRGCYC 1 cut(s) 48
BauI CACGAG 1 cut(s) 752
BbsI GAAGAC 5 cut(s) 669, 1253, 1376, 1842, 1944
Bbv12I GWGCWC 2 cut(s) 48, 1956
BbvCI CCTCAGC 1 cut(s) 396
BbvI GCAGC 3 cut(s) 379, 1012, 1935
BccI CCATC 7 cut(s) 176, 447, 952, 1081, 1097, 1236, 1678
BciT130I CCWGG 1 cut(s) 1764
BclI TGATCA 1 cut(s) 1566
BcnI CCSGG 1 cut(s) 24
BcoDI GTCTC 3 cut(s) 236, 1141, 1439
BfaI CTAG 3 cut(s) 954, 1152, 1172
BfmI CTRYAG 1 cut(s) 1866
BisI GCNGC 6 cut(s) 9, 393, 550, 1026, 1149, 1924
BlsI GCNGC 6 cut(s) 10, 394, 551, 1027, 1150, 1925
Bme1390I CCNGG 2 cut(s) 24, 1764
Bme18I GGWCC 2 cut(s) 787, 1271
BmeT110I CYCGRG 2 cut(s) 1605, 1634
BmgT120I GGNCC 3 cut(s) 787, 1214, 1271
BmiI GGNNCC 2 cut(s) 215, 788
BmrFI CCNGG 2 cut(s) 24, 1764
BmrI ACTGGG 2 cut(s) 1061, 1894
BmsI GCATC 8 cut(s) 109, 277, 286, 964, 1037, 1186, 1610, 1709
BmuI ACTGGG 2 cut(s) 1061, 1894
BpiI GAAGAC 5 cut(s) 669, 1253, 1376, 1842, 1944
BpmI CTGGAG 2 cut(s) 222, 1852
Bpu10I CCTNAGC 1 cut(s) 396
Bpu14I TTCGAA 1 cut(s) 1509
BpuEI CTTGAG 3 cut(s) 453, 518, 1857
BpuMI CCSGG 1 cut(s) 24
BsaJI CCNNGG 2 cut(s) 22, 1551
BsaWI WCCGGW 2 cut(s) 418, 1373
Bsc4I CCNNNNNNNGG 5 cut(s) 245, 425, 1540, 1589, 1948
Bse1I ACTGG 7 cut(s) 250, 343, 536, 1067, 1364, 1615, 1900
Bse21I CCTNAGG 2 cut(s) 218, 1218
Bse3DI GCAATG 1 cut(s) 306
BseBI CCWGG 1 cut(s) 1764
BseDI CCNNGG 2 cut(s) 22, 1551
BseGI GGATG 5 cut(s) 292, 439, 979, 1298, 1530
BseLI CCNNNNNNNGG 5 cut(s) 245, 425, 1540, 1589, 1948
BseMI GCAATG 1 cut(s) 306
BseMII CTCAG 3 cut(s) 387, 1209, 1745
BseNI ACTGG 7 cut(s) 250, 343, 536, 1067, 1364, 1615, 1900
BseRI GAGGAG 2 cut(s) 1556, 1809
BseSI GKGCMC 1 cut(s) 1956
BseXI GCAGC 3 cut(s) 379, 1012, 1935
BsgI GTGCAG 1 cut(s) 1204
Bsh1236I CGCG 1 cut(s) 552
BshFI GGCC 2 cut(s) 1148, 1216
BshNI GGYRCC 1 cut(s) 213
BsiHKAI GWGCWC 2 cut(s) 48, 1956
BsiHKCI CYCGRG 2 cut(s) 1605, 1634
BsiSI CCGG 3 cut(s) 24, 419, 1374
BslFI GGGAC 3 cut(s) 600, 722, 800
BslI CCNNNNNNNGG 5 cut(s) 245, 425, 1540, 1589, 1948
BsmAI GTCTC 3 cut(s) 236, 1141, 1439
BsmBI CGTCTC 1 cut(s) 1439
BsmFI GGGAC 3 cut(s) 600, 722, 800
BsnI GGCC 2 cut(s) 1148, 1216
BsoBI CYCGRG 2 cut(s) 1605, 1634
Bsp119I TTCGAA 1 cut(s) 1509
Bsp1286I GDGCHC 2 cut(s) 48, 1956
Bsp143I GATC 7 cut(s) 368, 580, 1556, 1566, 1690, 1711, 1766
Bsp19I CCATGG 1 cut(s) 1551
BspACI CCGC 3 cut(s) 186, 550, 1149
BspANI GGCC 2 cut(s) 1148, 1216
BspCNI CTCAG 3 cut(s) 388, 1210, 1744
BspFNI CGCG 1 cut(s) 552
BspHI TCATGA 1 cut(s) 178
BspLI GGNNCC 2 cut(s) 215, 788
BspPI GGATC 5 cut(s) 376, 588, 1564, 1698, 1774
BspT104I TTCGAA 1 cut(s) 1509
BspT107I GGYRCC 1 cut(s) 213
BsrDI GCAATG 1 cut(s) 306
BsrI ACTGG 7 cut(s) 250, 343, 536, 1067, 1364, 1615, 1900
BssECI CCNNGG 2 cut(s) 22, 1551
BssMI GATC 7 cut(s) 368, 580, 1556, 1566, 1690, 1711, 1766
BssNAI GTATAC 1 cut(s) 731
BssSI CACGAG 1 cut(s) 752
BssT1I CCWWGG 1 cut(s) 1551
Bst1107I GTATAC 1 cut(s) 731
Bst2BI CACGAG 1 cut(s) 752
Bst2UI CCWGG 1 cut(s) 1764
Bst4CI ACNGT 4 cut(s) 587, 728, 837, 1531
Bst6I CTCTTC 2 cut(s) 812, 1437
BstAPI GCANNNNNTGC 1 cut(s) 296
BstBI TTCGAA 1 cut(s) 1509
BstC8I GCNNGC 4 cut(s) 44, 608, 641, 1289
BstDEI CTNAG 5 cut(s) 218, 396, 1218, 1491, 1731
BstDSI CCRYGG 1 cut(s) 1551
BstEII GGTNACC 1 cut(s) 188
BstF5I GGATG 5 cut(s) 292, 439, 979, 1298, 1530
BstFNI CGCG 1 cut(s) 552
BstHHI GCGC 2 cut(s) 170, 1293
BstKTI GATC 7 cut(s) 371, 583, 1559, 1569, 1693, 1714, 1769
BstMAI GTCTC 3 cut(s) 236, 1141, 1439
BstMBI GATC 7 cut(s) 368, 580, 1556, 1566, 1690, 1711, 1766
BstMWI GCNNNNNNNGC 5 cut(s) 165, 296, 324, 1157, 1607
BstNI CCWGG 1 cut(s) 1764
BstNSI RCATGY 4 cut(s) 534, 610, 678, 1291
BstPI GGTNACC 1 cut(s) 188
BstSCI CCNGG 2 cut(s) 22, 1762
BstSFI CTRYAG 1 cut(s) 1866
BstSLI GKGCMC 1 cut(s) 1956
BstUI CGCG 1 cut(s) 552
BstV1I GCAGC 3 cut(s) 379, 1012, 1935
BstV2I GAAGAC 5 cut(s) 669, 1253, 1376, 1842, 1944
BstX2I RGATCY 2 cut(s) 368, 1556
BstYI RGATCY 2 cut(s) 368, 1556
BstZ17I GTATAC 1 cut(s) 731
Bsu36I CCTNAGG 2 cut(s) 218, 1218
BsuRI GGCC 2 cut(s) 1148, 1216
BtgI CCRYGG 1 cut(s) 1551
BtsCI GGATG 5 cut(s) 292, 439, 979, 1298, 1530
BtsIMutI CAGTG 4 cut(s) 350, 1357, 1423, 1954
Cac8I GCNNGC 4 cut(s) 44, 608, 641, 1289
CaiI CAGNNNCTG 3 cut(s) 245, 392, 1205
CciI TCATGA 1 cut(s) 178
CfoI GCGC 2 cut(s) 170, 1293
Cfr13I GGNCC 3 cut(s) 787, 1214, 1271
CseI GACGC 2 cut(s) 68, 852
Csp6I GTAC 2 cut(s) 1063, 1188
CviQI GTAC 2 cut(s) 1063, 1188
DdeI CTNAG 5 cut(s) 218, 396, 1218, 1491, 1731
DpnI GATC 7 cut(s) 370, 582, 1558, 1568, 1692, 1713, 1768
DpnII GATC 7 cut(s) 368, 580, 1556, 1566, 1690, 1711, 1766
DraIII CACNNNGTG 1 cut(s) 449
DrdI GACNNNNNNGTC 2 cut(s) 835, 1418
DseDI GACNNNNNNGTC 2 cut(s) 835, 1418
Eam1104I CTCTTC 2 cut(s) 812, 1437
EarI CTCTTC 2 cut(s) 812, 1437
Ecl136II GAGCTC 1 cut(s) 46
Eco130I CCWWGG 1 cut(s) 1551
Eco24I GRGCYC 1 cut(s) 48
Eco47I GGWCC 2 cut(s) 787, 1271
Eco53kI GAGCTC 1 cut(s) 46
Eco57I CTGAAG 5 cut(s) 144, 357, 369, 510, 1399
Eco81I CCTNAGG 2 cut(s) 218, 1218
Eco88I CYCGRG 2 cut(s) 1605, 1634
Eco91I GGTNACC 1 cut(s) 188
EcoICRI GAGCTC 1 cut(s) 46
EcoO65I GGTNACC 1 cut(s) 188
EcoRI GAATTC 2 cut(s) 923, 1726
EcoRII CCWGG 1 cut(s) 1762
EcoT14I CCWWGG 1 cut(s) 1551
EcoT38I GRGCYC 1 cut(s) 48
ErhI CCWWGG 1 cut(s) 1551
Esp3I CGTCTC 1 cut(s) 1439
FaqI GGGAC 3 cut(s) 600, 722, 800
FbaI TGATCA 1 cut(s) 1566
FblI GTMKAC 2 cut(s) 730, 846
Fnu4HI GCNGC 6 cut(s) 9, 393, 550, 1026, 1149, 1924
FokI GGATG 5 cut(s) 299, 426, 986, 1285, 1537
FriOI GRGCYC 1 cut(s) 48
Fsp4HI GCNGC 6 cut(s) 9, 393, 550, 1026, 1149, 1924
FspBI CTAG 3 cut(s) 954, 1152, 1172
GlaI GCGC 2 cut(s) 169, 1292
GluI GCNGC 6 cut(s) 9, 393, 550, 1026, 1149, 1924
GsuI CTGGAG 2 cut(s) 222, 1852
HaeIII GGCC 2 cut(s) 1148, 1216
HapII CCGG 3 cut(s) 24, 419, 1374
HgaI GACGC 2 cut(s) 68, 852
HhaI GCGC 2 cut(s) 170, 1293
Hin6I GCGC 2 cut(s) 168, 1291
HinP1I GCGC 2 cut(s) 168, 1291
HindIII AAGCTT 1 cut(s) 1436
HinfI GANTC 7 cut(s) 27, 254, 521, 893, 1810, 1834, 1944
HpaII CCGG 3 cut(s) 24, 419, 1374
HphI GGTGA 3 cut(s) 200, 692, 1695
Hpy166II GTNNAC 8 cut(s) 560, 590, 731, 847, 1105, 1390, 1787, 1954
Hpy188I TCNGA 6 cut(s) 32, 376, 1675, 1695, 1716, 1855
Hpy8I GTNNAC 8 cut(s) 560, 590, 731, 847, 1105, 1390, 1787, 1954
Hpy99I CGWCG 2 cut(s) 59, 62
HpyCH4III ACNGT 4 cut(s) 587, 728, 837, 1531
HpyCH4IV ACGT 1 cut(s) 1323
HpyF10VI GCNNNNNNNGC 5 cut(s) 165, 296, 324, 1157, 1607
HpyF3I CTNAG 5 cut(s) 218, 396, 1218, 1491, 1731
HpySE526I ACGT 1 cut(s) 1323
HspAI GCGC 2 cut(s) 168, 1291
Ksp22I TGATCA 1 cut(s) 1566
Kzo9I GATC 7 cut(s) 368, 580, 1556, 1566, 1690, 1711, 1766
LmnI GCTCC 2 cut(s) 1359, 1656
Lsp1109I GCAGC 3 cut(s) 379, 1012, 1935
LweI GCATC 8 cut(s) 109, 277, 286, 964, 1037, 1186, 1610, 1709
MaeI CTAG 3 cut(s) 954, 1152, 1172
MaeII ACGT 1 cut(s) 1323
MaeIII GTNAC 5 cut(s) 76, 188, 694, 1545, 1883
MalI GATC 7 cut(s) 370, 582, 1558, 1568, 1692, 1713, 1768
MboI GATC 7 cut(s) 368, 580, 1556, 1566, 1690, 1711, 1766
MflI RGATCY 2 cut(s) 368, 1556
MhlI GDGCHC 2 cut(s) 48, 1956
MlyI GAGTC 2 cut(s) 248, 1843
MroXI GAANNNNTTC 1 cut(s) 1616
MseI TTAA 8 cut(s) 576, 810, 1013, 1055, 1227, 1503, 1596, 1641
MslI CAYNNNNRTG 2 cut(s) 1112, 1362
MspI CCGG 3 cut(s) 24, 419, 1374
MspR9I CCNGG 2 cut(s) 24, 1764
MvaI CCWGG 1 cut(s) 1764
MvnI CGCG 1 cut(s) 552
MwoI GCNNNNNNNGC 5 cut(s) 165, 296, 324, 1157, 1607
NciI CCSGG 1 cut(s) 24
NcoI CCATGG 1 cut(s) 1551
NdeII GATC 7 cut(s) 368, 580, 1556, 1566, 1690, 1711, 1766
NlaIV GGNNCC 2 cut(s) 215, 788
NmuCI GTSAC 2 cut(s) 188, 1883
NspI RCATGY 4 cut(s) 534, 610, 678, 1291
NspV TTCGAA 1 cut(s) 1509
PaeI GCATGC 2 cut(s) 610, 1291
PagI TCATGA 1 cut(s) 178
PciI ACATGT 2 cut(s) 530, 674
PcsI WCGNNNNNNNCGW 1 cut(s) 63
PdmI GAANNNNTTC 1 cut(s) 1616
PfeI GAWTC 5 cut(s) 27, 521, 893, 1810, 1944
PflMI CCANNNNNTGG 1 cut(s) 245
PkrI GCNGC 6 cut(s) 10, 394, 551, 1027, 1150, 1925
PleI GAGTC 2 cut(s) 248, 1842
PpsI GAGTC 2 cut(s) 248, 1842
PscI ACATGT 2 cut(s) 530, 674
Psp124BI GAGCTC 1 cut(s) 48
Psp6I CCWGG 1 cut(s) 1762
PspEI GGTNACC 1 cut(s) 188
PspGI CCWGG 1 cut(s) 1762
PspN4I GGNNCC 2 cut(s) 215, 788
PspPI GGNCC 3 cut(s) 787, 1214, 1271
PsrI GAACNNNNNNTAC 2 cut(s) 314, 346
PstNI CAGNNNCTG 3 cut(s) 245, 392, 1205
PsuI RGATCY 2 cut(s) 368, 1556
RsaI GTAC 2 cut(s) 1064, 1189
RsaNI GTAC 2 cut(s) 1063, 1188
RseI CAYNNNNRTG 2 cut(s) 1112, 1362
SacI GAGCTC 1 cut(s) 48
SaqAI TTAA 8 cut(s) 576, 810, 1013, 1055, 1227, 1503, 1596, 1641
SatI GCNGC 6 cut(s) 9, 393, 550, 1026, 1149, 1924
Sau3AI GATC 7 cut(s) 368, 580, 1556, 1566, 1690, 1711, 1766
Sau96I GGNCC 3 cut(s) 787, 1214, 1271
SchI GAGTC 2 cut(s) 248, 1843
ScrFI CCNGG 2 cut(s) 24, 1764
SduI GDGCHC 2 cut(s) 48, 1956
SfaNI GCATC 8 cut(s) 109, 277, 286, 964, 1037, 1186, 1610, 1709
SfcI CTRYAG 1 cut(s) 1866
SfuI TTCGAA 1 cut(s) 1509
SinI GGWCC 2 cut(s) 787, 1271
SmiMI CAYNNNNRTG 2 cut(s) 1112, 1362
SmlI CTYRAG 3 cut(s) 468, 497, 1872
SmoI CTYRAG 3 cut(s) 468, 497, 1872
SphI GCATGC 2 cut(s) 610, 1291
SsiI CCGC 3 cut(s) 186, 550, 1149
SspI AATATT 2 cut(s) 574, 1005
SspMI CTAG 3 cut(s) 954, 1152, 1172
SstI GAGCTC 1 cut(s) 48
StyD4I CCNGG 2 cut(s) 22, 1762
StyI CCWWGG 1 cut(s) 1551
TaaI ACNGT 4 cut(s) 587, 728, 837, 1531
TaiI ACGT 1 cut(s) 1326
TaqI TCGA 2 cut(s) 1139, 1509
TaqII GACCGA 2 cut(s) 1259, 1956
TauI GCSGC 2 cut(s) 552, 1151
TfiI GAWTC 5 cut(s) 27, 521, 893, 1810, 1944
Tru1I TTAA 8 cut(s) 576, 810, 1013, 1055, 1227, 1503, 1596, 1641
Tru9I TTAA 8 cut(s) 576, 810, 1013, 1055, 1227, 1503, 1596, 1641
TscAI CASTG 3 cut(s) 350, 1364, 1423
TseFI GTSAC 2 cut(s) 188, 1883
TseI GCWGC 4 cut(s) 8, 392, 1025, 1923
Tsp45I GTSAC 2 cut(s) 188, 1883
TspDTI ATGAA 9 cut(s) 124, 218, 530, 873, 1191, 1271, 1271, 1442, 1609
TspGWI ACGGA 1 cut(s) 726
TspRI CASTG 3 cut(s) 350, 1364, 1423
Van91I CCANNNNNTGG 1 cut(s) 245
VneI GTGCAC 1 cut(s) 1952
VpaK11BI GGWCC 2 cut(s) 787, 1271
XapI RAATTY 4 cut(s) 797, 923, 967, 1726
XceI RCATGY 4 cut(s) 534, 610, 678, 1291
XmiI GTMKAC 2 cut(s) 730, 846
XmnI GAANNNNTTC 1 cut(s) 1616
XspI CTAG 3 cut(s) 954, 1152, 1172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.