Rorug05G0195600

metal ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000343
Physical Location & Seq
Forward (+)
19270645 .. 19271166
522 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0195600.1

Sequence Viewer

Length: 522 bp
ATGCGTCATCTTCTAGTTTATAGCTGTGATGTGACTTCTGGAGTGGCACAAGGAGTTGAGATTTCTGCAGGCAATATTGGAGCTTTATCTTCCCTACAGAAGTTGTTTCTAATTAAGGTGAAAACACAAAGAAAAGTAGTCCTTAAAGCCTTGGGAGAGTTAATTGCTCTCCGGAAGTTGGGGCTGGTAGACCTTGAAAGAGAACATGGAAGAGAATTGTGTTGTTCCATTCAAAAAATGCCACAGCTTTCAACACTTGATGTACAATCAACAAGCGAAGATGAGTATCTTGATTTGGATCAACTGAATTCCCCTCCCGGGCCTCCCCGCTATCTCCAACGTCTATCTTTGACAGGGCGCCTAGAAAGTCTACCACAGTGGATTCCCCAGCTTCACAGTCTAGCTAGGATTGCTTTGAAGTGGTCTAAACTGAATGCTGATGTCAACTCACTTGAGGCGCTCCAAGATTTGCCTAATCTGGTGGAGCTACAGTGGTGGACTATTTCACTGGGGATTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006950 GO:0006952 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009791 GO:0009889 GO:0009893 GO:0009909 GO:0009911 GO:0009987 GO:0010228 GO:0010468 GO:0010556 GO:0010604 GO:0010638 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030154 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031326 GO:0031399 GO:0031401 GO:0031440 GO:0031935 GO:0031937 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0033043 GO:0033044 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043954 GO:0044030 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048468 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050684 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051052 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051276 GO:0051570 GO:0051574 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060968 GO:0061085 GO:0061087 GO:0061458 GO:0065007 GO:0070827 GO:0070828 GO:0070829 GO:0071840 GO:0080090 GO:0090436 GO:0097159 GO:0098542 GO:0099402 GO:0140110 GO:1900109 GO:1900111 GO:1900363 GO:1901363 GO:1902275 GO:1903311 GO:1903506 GO:1905269 GO:2000024 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNMT1-RFD

Protein Analysis

173

Amino Acids

19.33

Weight (kDa)

6.83

Isoelectric Point (pI)

36.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 19 - 166 1.6e-15 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000343)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48090 AT5G48090 AT5G48090 AT5G55390 AT5G55390 AT5G55390
fragaria_vesca FvH4_3g23690 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160
malus_domestica MD03G1191000.v1.1 MD11G1207800.v1.1 MD11G1208000.v1.1
prunus_persica Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227600_v2.0.a1 Prupe.4G227700_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1
pyrus_communis pycom01g03400 pycom03g14420 pycom11g18100 pycom11g18140 pycom11g18150 pycom11g18160
rosa_chinensis RchiOBHm_Chr2g0145981 RchiOBHm_Chr4g0405241 RchiOBHm_Chr4g0405271 RchiOBHm_Chr5g0016201 RchiOBHm_Chr5g0041831 RchiOBHm_Chr5g0041871 RchiOBHm_Chr5g0041881 RchiOBHm_Chr5g0059241
rosa_laevigata RLG00000002117 RLG00000008861 RLG00000008862 RLG00000011000 RLG00000033216 RLG00000034097 RLG00000034101
rosa_multiflora Rmu_sc0000161.1_g000001 Rmu_sc0000861.1_g000040 Rmu_sc0007522.1_g000003 Rmu_sc0009443.1_g000015 Rmu_sc0022129.1_g000001 Rmu_sc0042315.1_g000001
rosa_roxburghii Rroxscaffold_1G00038660 Rroxscaffold_1G00038690 Rroxscaffold_5G00349560 Rroxscaffold_5G00349610 Rroxscaffold_6G00388370 Rroxscaffold_7G00188740
rosa_rugosa Rorug03G0199700 Rorug04G0055400 Rorug04G0055500 Rorug04G0055900 Rorug04G0056000 Rorug04G0056100 Rorug04G0056100 Rorug04G0056200 Rorug05G0195600 Rorug05G0195700 Rorug05G0195800 Rorug05G0195900 Rorug05G0196800 Rorug05G0385000
rosa_samantha Rh4AG129900 Rh4AG130100 Rh4BG124200 Rh4BG124400 Rh4BG124500 Rh4CG137200 Rh4CG137300 Rh4DG123500 Rh4DG123700 Rh5AG280800 Rh5AG281400 Rh5BG286700 Rh5BG287000 Rh5BG397800 Rh5CG318100 Rh5CG318600 Rh5CG421600 Rh5DG132300 Rh5DG132400 Rh5DG295400 Rh5DG295700 Rh7BG475300
rosa_wichuraiana Rw0G001330 Rw0G005730 Rw4G008670 Rw4G010510 Rw4G010540 Rw5G026450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 357
AccI GTMKAC 2 cut(s) 189, 370
AccIII TCCGGA 1 cut(s) 171
AciI CCGC 1 cut(s) 328
AclWI GGATC 1 cut(s) 306
AcsI RAATTY 1 cut(s) 307
AcyI GRCGYC 1 cut(s) 358
AfaI GTAC 1 cut(s) 264
AfiI CCNNNNNNNGG 2 cut(s) 178, 318
AgsI TTSAA 5 cut(s) 197, 233, 252, 418, 518
AluBI AGCT 6 cut(s) 24, 83, 247, 391, 404, 487
AluI AGCT 6 cut(s) 24, 83, 247, 391, 404, 487
AlwI GGATC 1 cut(s) 306
Ama87I CYCGRG 1 cut(s) 317
Aor13HI TCCGGA 1 cut(s) 171
AoxI GGCC 1 cut(s) 320
ApoI RAATTY 1 cut(s) 307
AspLEI GCGC 2 cut(s) 360, 460
AspS9I GGNCC 1 cut(s) 320
AsuC2I CCSGG 2 cut(s) 318, 319
AsuHPI GGTGA 1 cut(s) 130
AvaI CYCGRG 1 cut(s) 317
BanI GGYRCC 1 cut(s) 357
BcnI CCSGG 2 cut(s) 318, 319
BfaI CTAG 4 cut(s) 14, 362, 401, 405
BfmI CTRYAG 3 cut(s) 66, 95, 488
BfoI RGCGCY 2 cut(s) 361, 461
Bme1390I CCNGG 2 cut(s) 318, 319
BmeT110I CYCGRG 1 cut(s) 317
BmgT120I GGNCC 1 cut(s) 320
BmiI GGNNCC 1 cut(s) 359
BmrFI CCNGG 2 cut(s) 318, 319
BmrI ACTGGG 1 cut(s) 518
BmuI ACTGGG 1 cut(s) 518
BpmI CTGGAG 1 cut(s) 60
BpuEI CTTGAG 1 cut(s) 473
BpuMI CCSGG 2 cut(s) 318, 319
BsaBI GATNNNNATC 2 cut(s) 285, 297
BsaHI GRCGYC 1 cut(s) 358
BsaJI CCNNGG 2 cut(s) 150, 317
BsaWI WCCGGW 1 cut(s) 171
BsaXI ACNNNNNCTCC 2 cut(s) 476, 506
Bsc4I CCNNNNNNNGG 2 cut(s) 178, 318
Bse1I ACTGG 1 cut(s) 513
Bse8I GATNNNNATC 2 cut(s) 285, 297
BseAI TCCGGA 1 cut(s) 171
BseDI CCNNGG 2 cut(s) 150, 317
BseJI GATNNNNATC 2 cut(s) 285, 297
BseLI CCNNNNNNNGG 2 cut(s) 178, 318
BseNI ACTGG 1 cut(s) 513
BseYI CCCAGC 1 cut(s) 387
BshFI GGCC 1 cut(s) 322
BshNI GGYRCC 1 cut(s) 357
BsiHKCI CYCGRG 1 cut(s) 317
BsiSI CCGG 2 cut(s) 172, 318
BslI CCNNNNNNNGG 2 cut(s) 178, 318
BsmI GAATGC 1 cut(s) 439
BsnI GGCC 1 cut(s) 322
BsoBI CYCGRG 1 cut(s) 317
Bsp13I TCCGGA 1 cut(s) 171
Bsp1407I TGTACA 1 cut(s) 262
Bsp143I GATC 1 cut(s) 298
BspACI CCGC 1 cut(s) 328
BspANI GGCC 1 cut(s) 322
BspEI TCCGGA 1 cut(s) 171
BspLI GGNNCC 1 cut(s) 359
BspMAI CTGCAG 1 cut(s) 70
BspPI GGATC 1 cut(s) 306
BspT107I GGYRCC 1 cut(s) 357
BsrGI TGTACA 1 cut(s) 262
BsrI ACTGG 1 cut(s) 513
BssECI CCNNGG 2 cut(s) 150, 317
BssMI GATC 1 cut(s) 298
BssNI GRCGYC 1 cut(s) 358
BssT1I CCWWGG 1 cut(s) 150
Bst4CI ACNGT 3 cut(s) 378, 398, 492
Bst6I CTCTTC 1 cut(s) 205
BstACI GRCGYC 1 cut(s) 358
BstAUI TGTACA 1 cut(s) 262
BstC8I GCNNGC 1 cut(s) 70
BstH2I RGCGCY 2 cut(s) 361, 461
BstHHI GCGC 2 cut(s) 360, 460
BstKTI GATC 1 cut(s) 301
BstMBI GATC 1 cut(s) 298
BstMWI GCNNNNNNNGC 1 cut(s) 410
BstSCI CCNGG 2 cut(s) 316, 317
BstSFI CTRYAG 3 cut(s) 66, 95, 488
BsuRI GGCC 1 cut(s) 322
BtsIMutI CAGTG 3 cut(s) 383, 497, 506
Cac8I GCNNGC 1 cut(s) 70
CfoI GCGC 2 cut(s) 360, 460
Cfr13I GGNCC 1 cut(s) 320
Cfr9I CCCGGG 1 cut(s) 317
Csp6I GTAC 1 cut(s) 263
CviAII CATG 1 cut(s) 206
CviJI RGCY 9 cut(s) 24, 83, 149, 184, 247, 322, 391, 404, 487
CviKI_1 RGCY 9 cut(s) 24, 83, 149, 184, 247, 322, 391, 404, 487
CviQI GTAC 1 cut(s) 263
DinI GGCGCC 1 cut(s) 359
DpnI GATC 1 cut(s) 300
DpnII GATC 1 cut(s) 298
Eam1104I CTCTTC 1 cut(s) 205
EarI CTCTTC 1 cut(s) 205
Eco130I CCWWGG 1 cut(s) 150
Eco88I CYCGRG 1 cut(s) 317
EcoRI GAATTC 1 cut(s) 307
EcoT14I CCWWGG 1 cut(s) 150
EgeI GGCGCC 1 cut(s) 359
EheI GGCGCC 1 cut(s) 359
ErhI CCWWGG 1 cut(s) 150
FaeI CATG 1 cut(s) 209
FaiI YATR 2 cut(s) 21, 207
FalI AAGNNNNNCTT 2 cut(s) 126, 158
FatI CATG 1 cut(s) 205
FauI CCCGC 1 cut(s) 335
FblI GTMKAC 2 cut(s) 189, 370
FspBI CTAG 4 cut(s) 14, 362, 401, 405
GlaI GCGC 2 cut(s) 359, 459
GsaI CCCAGC 1 cut(s) 391
GsuI CTGGAG 1 cut(s) 60
HaeII RGCGCY 2 cut(s) 361, 461
HaeIII GGCC 1 cut(s) 322
HapII CCGG 2 cut(s) 172, 318
HhaI GCGC 2 cut(s) 360, 460
Hin1I GRCGYC 1 cut(s) 358
Hin1II CATG 1 cut(s) 209
Hin6I GCGC 2 cut(s) 358, 458
HinP1I GCGC 2 cut(s) 358, 458
HincII GTYRAC 1 cut(s) 445
HindII GTYRAC 1 cut(s) 445
HinfI GANTC 2 cut(s) 382, 514
HpaII CCGG 2 cut(s) 172, 318
HphI GGTGA 1 cut(s) 130
Hpy166II GTNNAC 4 cut(s) 190, 371, 445, 498
Hpy188III TCNNGA 3 cut(s) 39, 172, 290
Hpy8I GTNNAC 4 cut(s) 190, 371, 445, 498
HpyCH4III ACNGT 3 cut(s) 378, 398, 492
HpyCH4IV ACGT 1 cut(s) 340
HpyCH4V TGCA 1 cut(s) 68
HpyF10VI GCNNNNNNNGC 1 cut(s) 410
HpySE526I ACGT 1 cut(s) 340
Hsp92I GRCGYC 1 cut(s) 358
Hsp92II CATG 1 cut(s) 209
HspAI GCGC 2 cut(s) 358, 458
KasI GGCGCC 1 cut(s) 357
Kpn2I TCCGGA 1 cut(s) 171
Kzo9I GATC 1 cut(s) 298
LmnI GCTCC 3 cut(s) 80, 465, 484
LpnPI CCDG 9 cut(s) 24, 54, 170, 185, 331, 339, 401, 464, 494
MaeI CTAG 4 cut(s) 14, 362, 401, 405
MaeII ACGT 1 cut(s) 340
MaeIII GTNAC 1 cut(s) 31
MalI GATC 1 cut(s) 300
MboI GATC 1 cut(s) 298
MboII GAAGA 3 cut(s) 81, 222, 290
MluCI AATT 4 cut(s) 111, 162, 215, 307
Mly113I GGCGCC 1 cut(s) 358
MmeI TCCRAC 1 cut(s) 361
MnlI CCTC 3 cut(s) 324, 333, 448
MroI TCCGGA 1 cut(s) 171
MseI TTAA 3 cut(s) 114, 144, 161
MspI CCGG 2 cut(s) 172, 318
MspR9I CCNGG 2 cut(s) 318, 319
Mva1269I GAATGC 1 cut(s) 439
MwoI GCNNNNNNNGC 1 cut(s) 410
NarI GGCGCC 1 cut(s) 358
NciI CCSGG 2 cut(s) 318, 319
NdeII GATC 1 cut(s) 298
NlaIII CATG 1 cut(s) 209
NlaIV GGNNCC 1 cut(s) 359
NmuCI GTSAC 1 cut(s) 31
PctI GAATGC 1 cut(s) 439
PfeI GAWTC 2 cut(s) 382, 514
PluTI GGCGCC 1 cut(s) 361
PspFI CCCAGC 1 cut(s) 387
PspN4I GGNNCC 1 cut(s) 359
PspPI GGNCC 1 cut(s) 320
PstI CTGCAG 1 cut(s) 70
RsaI GTAC 1 cut(s) 264
RsaNI GTAC 1 cut(s) 263
SaqAI TTAA 3 cut(s) 114, 144, 161
Sau3AI GATC 1 cut(s) 298
Sau96I GGNCC 1 cut(s) 320
ScrFI CCNGG 2 cut(s) 318, 319
SetI ASST 9 cut(s) 26, 85, 120, 195, 249, 343, 393, 406, 489
SfcI CTRYAG 3 cut(s) 66, 95, 488
SfoI GGCGCC 1 cut(s) 359
SmaI CCCGGG 1 cut(s) 319
SmlI CTYRAG 1 cut(s) 452
SmoI CTYRAG 1 cut(s) 452
Sse9I AATT 4 cut(s) 111, 162, 215, 307
SsiI CCGC 1 cut(s) 328
SspDI GGCGCC 1 cut(s) 357
SspI AATATT 1 cut(s) 76
SspMI CTAG 4 cut(s) 14, 362, 401, 405
StyD4I CCNGG 2 cut(s) 316, 317
StyI CCWWGG 1 cut(s) 150
TaaI ACNGT 3 cut(s) 378, 398, 492
TaiI ACGT 1 cut(s) 343
TasI AATT 4 cut(s) 111, 162, 215, 307
TatI WGTACW 1 cut(s) 262
TfiI GAWTC 2 cut(s) 382, 514
Tru1I TTAA 3 cut(s) 114, 144, 161
Tru9I TTAA 3 cut(s) 114, 144, 161
TscAI CASTG 3 cut(s) 383, 497, 513
TseFI GTSAC 1 cut(s) 31
Tsp45I GTSAC 1 cut(s) 31
TspMI CCCGGG 1 cut(s) 317
TspRI CASTG 3 cut(s) 383, 497, 513
XapI RAATTY 1 cut(s) 307
XmaI CCCGGG 1 cut(s) 317
XmiI GTMKAC 2 cut(s) 189, 370
XspI CTAG 4 cut(s) 14, 362, 401, 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.