Rh5DG132300

metal ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000343
Physical Location & Seq
Reverse (-)
13027752 .. 13028637
886 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG132300.1

Sequence Viewer

Length: 447 bp
ATGAGACCGGAGTTTCTGCAGAAGAACTTGAGAAAAGAATTATGCTGGGGGAATCTTTTACATGTCCAATTCACATGCAAGTGCTGGTTTTGTAAGCAAGGAGAGAATAAGAAGGATCCTGAATTGCAGTTTGCTGTGTGTAGGCGTTGTCCTACATCCTACCACTGTAAATGCTTGCCACGGGACATTCGTTTTGCAAAAGGCAAGGAAGGTGATGAGGAAGACATGGATACAAGAGCTTGGGAAGGTCTATTACCTGACCGTGTGCTAATATATTGCATGTACTTGCAAAAGCACAGCTTTTACTCTATGTTTATTCTGAAGGCATTCACTTACAAACATTGTTCTAAAAGTTCATCAAGTGATAATATCTACAGCCAATCCAAGCAGCACAACATGGTTTTTCTATTTGAACCCTTCACTGTCAAGAAATCAAATATACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006950 GO:0006952 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009791 GO:0009889 GO:0009893 GO:0009909 GO:0009911 GO:0009987 GO:0010228 GO:0010468 GO:0010556 GO:0010604 GO:0010638 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030154 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031326 GO:0031399 GO:0031401 GO:0031440 GO:0031935 GO:0031937 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0033043 GO:0033044 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043954 GO:0044030 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048468 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050684 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051052 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051276 GO:0051570 GO:0051574 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060968 GO:0061085 GO:0061087 GO:0061458 GO:0065007 GO:0070827 GO:0070828 GO:0070829 GO:0071840 GO:0080090 GO:0090436 GO:0097159 GO:0098542 GO:0099402 GO:0140110 GO:1900109 GO:1900111 GO:1900363 GO:1901363 GO:1902275 GO:1903311 GO:1903506 GO:1905269 GO:2000024 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNMT1-RFD

Protein Analysis

148

Amino Acids

17.66

Weight (kDa)

9.0

Isoelectric Point (pI)

62.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHDvar_NSD PF23004 28 - 65 2.7e-06 Histone-lysine N-methyltransferase NSD-like, variant PHD zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000343)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48090 AT5G48090 AT5G48090 AT5G55390 AT5G55390 AT5G55390
fragaria_vesca FvH4_3g23690 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160
malus_domestica MD03G1191000.v1.1 MD11G1207800.v1.1 MD11G1208000.v1.1
prunus_persica Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227600_v2.0.a1 Prupe.4G227700_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1
pyrus_communis pycom01g03400 pycom03g14420 pycom11g18100 pycom11g18140 pycom11g18150 pycom11g18160
rosa_chinensis RchiOBHm_Chr2g0145981 RchiOBHm_Chr4g0405241 RchiOBHm_Chr4g0405271 RchiOBHm_Chr5g0016201 RchiOBHm_Chr5g0041831 RchiOBHm_Chr5g0041871 RchiOBHm_Chr5g0041881 RchiOBHm_Chr5g0059241
rosa_laevigata RLG00000002117 RLG00000008861 RLG00000008862 RLG00000011000 RLG00000033216 RLG00000034097 RLG00000034101
rosa_multiflora Rmu_sc0000161.1_g000001 Rmu_sc0000861.1_g000040 Rmu_sc0007522.1_g000003 Rmu_sc0009443.1_g000015 Rmu_sc0022129.1_g000001 Rmu_sc0042315.1_g000001
rosa_roxburghii Rroxscaffold_1G00038660 Rroxscaffold_1G00038690 Rroxscaffold_5G00349560 Rroxscaffold_5G00349610 Rroxscaffold_6G00388370 Rroxscaffold_7G00188740
rosa_rugosa Rorug03G0199700 Rorug04G0055400 Rorug04G0055500 Rorug04G0055900 Rorug04G0056000 Rorug04G0056100 Rorug04G0056100 Rorug04G0056200 Rorug05G0195600 Rorug05G0195700 Rorug05G0195800 Rorug05G0195900 Rorug05G0196800 Rorug05G0385000
rosa_samantha Rh4AG129900 Rh4AG130100 Rh4BG124200 Rh4BG124400 Rh4BG124500 Rh4CG137200 Rh4CG137300 Rh4DG123500 Rh4DG123700 Rh5AG280800 Rh5AG281400 Rh5BG286700 Rh5BG287000 Rh5BG397800 Rh5CG318100 Rh5CG318600 Rh5CG421600 Rh5DG132300 Rh5DG132400 Rh5DG295400 Rh5DG295700 Rh7BG475300
rosa_wichuraiana Rw0G001330 Rw0G005730 Rw4G008670 Rw4G010510 Rw4G010540 Rw5G026450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 110, 123
AcuI CTGAAG 1 cut(s) 341
AfaI GTAC 1 cut(s) 284
AflIII ACRYGT 1 cut(s) 61
AgsI TTSAA 1 cut(s) 413
AluBI AGCT 2 cut(s) 239, 300
AluI AGCT 2 cut(s) 239, 300
AlwI GGATC 2 cut(s) 110, 123
ApeKI GCWGC 1 cut(s) 388
ArsI GACNNNNNNTTYG 2 cut(s) 176, 208
Asp700I GAANNNNTTC 1 cut(s) 326
AsuHPI GGTGA 1 cut(s) 224
BamHI GGATCC 1 cut(s) 115
BarI GAAGNNNNNNTAC 2 cut(s) 237, 269
BbsI GAAGAC 1 cut(s) 228
BbvI GCAGC 1 cut(s) 400
BciVI GTATCC 1 cut(s) 223
BfmI CTRYAG 2 cut(s) 17, 373
BfuI GTATCC 1 cut(s) 223
BisI GCNGC 1 cut(s) 389
BlsI GCNGC 1 cut(s) 390
BmiI GGNNCC 1 cut(s) 117
BpiI GAAGAC 1 cut(s) 228
BpuEI CTTGAG 1 cut(s) 49
BsaJI CCNNGG 1 cut(s) 179
BsaWI WCCGGW 1 cut(s) 7
BseDI CCNNGG 1 cut(s) 179
BseGI GGATG 1 cut(s) 155
BseXI GCAGC 1 cut(s) 400
BseYI CCCAGC 1 cut(s) 45
BsiSI CCGG 1 cut(s) 8
BslFI GGGAC 1 cut(s) 197
BsmFI GGGAC 1 cut(s) 197
BsmI GAATGC 1 cut(s) 326
Bsp143I GATC 1 cut(s) 115
BspLI GGNNCC 1 cut(s) 117
BspMAI CTGCAG 1 cut(s) 21
BspPI GGATC 2 cut(s) 110, 123
BssECI CCNNGG 1 cut(s) 179
BssMI GATC 1 cut(s) 115
Bst4CI ACNGT 4 cut(s) 167, 263, 424, 444
BstC8I GCNNGC 1 cut(s) 176
BstDSI CCRYGG 1 cut(s) 179
BstF5I GGATG 1 cut(s) 155
BstKTI GATC 1 cut(s) 118
BstMBI GATC 1 cut(s) 115
BstNSI RCATGY 3 cut(s) 65, 78, 283
BstSFI CTRYAG 2 cut(s) 17, 373
BstV1I GCAGC 1 cut(s) 400
BstV2I GAAGAC 1 cut(s) 228
BstX2I RGATCY 1 cut(s) 115
BstYI RGATCY 1 cut(s) 115
BsuI GTATCC 1 cut(s) 223
BtgI CCRYGG 1 cut(s) 179
BtsCI GGATG 1 cut(s) 155
BtsIMutI CAGTG 2 cut(s) 163, 420
Cac8I GCNNGC 1 cut(s) 176
Csp6I GTAC 1 cut(s) 283
CviAII CATG 5 cut(s) 62, 75, 226, 280, 397
CviJI RGCY 3 cut(s) 239, 300, 378
CviKI_1 RGCY 3 cut(s) 239, 300, 378
CviQI GTAC 1 cut(s) 283
DpnI GATC 1 cut(s) 117
DpnII GATC 1 cut(s) 115
Eco57I CTGAAG 1 cut(s) 341
FaeI CATG 5 cut(s) 65, 78, 229, 283, 400
FaiI YATR 9 cut(s) 43, 63, 76, 227, 274, 281, 311, 398, 440
FalI AAGNNNNNCTT 2 cut(s) 284, 316
FaqI GGGAC 1 cut(s) 197
FatI CATG 5 cut(s) 61, 74, 225, 279, 396
Fnu4HI GCNGC 1 cut(s) 389
FokI GGATG 1 cut(s) 142
Fsp4HI GCNGC 1 cut(s) 389
GluI GCNGC 1 cut(s) 389
GsaI CCCAGC 1 cut(s) 49
HapII CCGG 1 cut(s) 8
Hin1II CATG 5 cut(s) 65, 78, 229, 283, 400
HinfI GANTC 1 cut(s) 52
HpaII CCGG 1 cut(s) 8
HphI GGTGA 1 cut(s) 224
Hpy188I TCNGA 1 cut(s) 321
Hpy188III TCNNGA 2 cut(s) 119, 427
HpyAV CCTTC 5 cut(s) 106, 203, 239, 316, 427
HpyCH4III ACNGT 4 cut(s) 167, 263, 424, 444
HpyCH4V TGCA 6 cut(s) 19, 78, 127, 197, 279, 289
Hsp92II CATG 5 cut(s) 65, 78, 229, 283, 400
Kzo9I GATC 1 cut(s) 115
LpnPI CCDG 5 cut(s) 21, 31, 70, 132, 270
Lsp1109I GCAGC 1 cut(s) 400
MalI GATC 1 cut(s) 117
MboI GATC 1 cut(s) 115
MboII GAAGA 2 cut(s) 34, 233
MflI RGATCY 1 cut(s) 115
MluCI AATT 3 cut(s) 38, 68, 122
MnlI CCTC 1 cut(s) 211
MroXI GAANNNNTTC 1 cut(s) 326
MslI CAYNNNNRTG 1 cut(s) 79
MspI CCGG 1 cut(s) 8
Mva1269I GAATGC 1 cut(s) 326
NdeII GATC 1 cut(s) 115
NlaIII CATG 5 cut(s) 65, 78, 229, 283, 400
NlaIV GGNNCC 1 cut(s) 117
NspI RCATGY 3 cut(s) 65, 78, 283
PciI ACATGT 1 cut(s) 61
PcsI WCGNNNNNNNCGW 1 cut(s) 187
PctI GAATGC 1 cut(s) 326
PdmI GAANNNNTTC 1 cut(s) 326
PfeI GAWTC 1 cut(s) 52
PkrI GCNGC 1 cut(s) 390
PscI ACATGT 1 cut(s) 61
PspFI CCCAGC 1 cut(s) 45
PspN4I GGNNCC 1 cut(s) 117
PstI CTGCAG 1 cut(s) 21
PsuI RGATCY 1 cut(s) 115
RsaI GTAC 1 cut(s) 284
RsaNI GTAC 1 cut(s) 283
RseI CAYNNNNRTG 1 cut(s) 79
SatI GCNGC 1 cut(s) 389
Sau3AI GATC 1 cut(s) 115
SetI ASST 5 cut(s) 214, 241, 250, 259, 302
SfcI CTRYAG 2 cut(s) 17, 373
SmiMI CAYNNNNRTG 1 cut(s) 79
SmlI CTYRAG 1 cut(s) 28
SmoI CTYRAG 1 cut(s) 28
Sse9I AATT 3 cut(s) 38, 68, 122
TaaI ACNGT 4 cut(s) 167, 263, 424, 444
TasI AATT 3 cut(s) 38, 68, 122
TatI WGTACW 1 cut(s) 282
TfiI GAWTC 1 cut(s) 52
TscAI CASTG 2 cut(s) 170, 427
TseI GCWGC 1 cut(s) 388
TspDTI ATGAA 1 cut(s) 345
TspRI CASTG 2 cut(s) 170, 427
XceI RCATGY 3 cut(s) 65, 78, 283
XmnI GAANNNNTTC 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.