Prupe.4G227500_v2.0.a1

metal ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000343
Physical Location & Seq
Reverse (-)
14485736 .. 14496834
11099 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G227500.2

Sequence Viewer

Length: 3771 bp
ATGGCACCGTCAGATGACTCAGATGATGAGAGCGAGCATTTGCCAGATTTTGTTACGAATTACCATTTTATAGACGACGAGGATGTACCCGTCTCTTTTCATGTTTTGCCAATTGAATGGAGTGAGGGTAAGAGGCAGGATGGCAAGACTCGGCAGATATCTATGCGTGGCACTGCTGATAATGGGCTTCAGAGAATATATATGCAGGTTATCGCATGGAAGTTTGACCTTTCCAATGTGGATCCTGTGATCTCGGTGCTCTCAAAGGAAAACCACTGGGTCAGGCTTCAGAAGCCAAGGAAGAGCTTTGAGGACATAATAAGGTCAATCTTGATAACAGTGCAGTGCCTTCATTATGTGAAGAGAAATCCTGAGACATCCAGCAAATCTTTATGGGATCATCTATCTAAAGTTTTCAGCTCGTATGAGGTCAGGCCGTCGCAGAATGACCTGGTGAATCACATGCCTCTAGTTAGTGAAGCTATTAAATGGGATGATGCCTTAGCAAAGTCCAAGTTTTTAGTCAACTTTCTTAAAGAGAAGCCCATGAAGAGGAAACTATATGATGAGGACATTCAAGCTACAGAAAAGCCCGGGTTTATAGTTGATGACCTGGAAGATTATGTGATTGATGTTGAAGACGAGTCCAATGATGATGACAACCTGTTTGATTCTGTTTGTGCTTTTTGTGATAATGGTGGAGATCTTTTGTGCTGTGAAGGGAGATGCCTAAGGTCCTTTCATGCAACTGAAGAGAGTGGTGAGGAATCTATGTGTGAATCTCTTGGCTTTACACAGGATGAAGTAGATGCGATGCAAAATTTCTTCTGCAAGAACTGTGAATATAAGCAGCATCAGTGCTTTGCTTGCGGGAAGCTAGGATCCTCTGATAGATCTTCAGTTGCCGAGGTGTTCCCCTGTGTTTCTGCAACCTGTGGTCAATTTTACCATCCACATTGTATTGCACAACTCATTTATCAAGACAATGGAGTTACTGCTGAAGAGCTTGAGAAAAACATTTCTAAGGGGGAATCTTTTACGTGCCCAATACATAAATGCTGTGTTTGTAAACAAGGAGAGAATAAGAAAGATCCTGAGATGCGTTTTGCTGTCTGTAGGCGTTGTCCAAAATCCTACCATAGGAAATGCCTGCCACGGGAGATTGTATTTGAGAAAAAAGCGGGAGACGTAGAAGAGGAGGATGTAATAATAAGAGCTTGGGAAGATCTATTACCTAATCGTGTACTAATATATTGCATGAAACATGAGATAGTTGAAAGAATTGGAACTCCAATAAGGGATCACGTAAAATTTCCTGATGTTAAAGAAAAGAAGACTACCATTGTTAAAAGGAAGACTGGTTTTGACGAGAAAAAGAGAAAATGGACAACAGAATCTTTTCTAGATAGTGAGAAATCTGTGACAAAGAAGAGAAACCTTTCCTCTGAAGAATTCCGTAGGGGGCAAACGGCTCCTACATTGTCTAGACAGAAGCTGAAGTTACCTTTTCCTGCAAAAGTGGGTGGTAGCAAAACTAGTGAAAAAGTACCATCTCGGTTAGATATATCAAGAAAGGTGAAAGTAAATAGTTCATTGAAAAAGGAAATTAAGACTTCCGTAGCTGAGGGAAAGAAGTCCTCATTGGGTGATCAACTATTTGACTACATGAAGGGGTCTGAGCAAGTGAAGTCAGGGAAGCAGGGTAAACCTGATGGTGAGTGTAATTCGGCAACAGTTAATCCTGCTTCAAAGAAGTTGAGCAGTGAAGAACCATCTTTAGATGCAGCTTCAGAGAGGAGATTATTGGCTTTAATGAAAGATGCTGCATCTTCAACACCCCTGGAAGATGTTATAAGAAAGCACAAAGTTCCATCTACTCATGCATTTTCGTCGAAAAATGCTGTGGAAAGGAACATTACACTGGGAAAGGTGGAAGGTTCAGTTGAGGCTATTCGAACGGCGTTACGGAAACTAGAGGAAGGATGCAGTATTGAAGATTCAGAGGCTGTTTGTGCGCCTGAGATTCTTAACCAGATTTTTAAGTGGAAGAACAAGCTGAAAGTCTATCTTGCACCTTTTTTGCACGGAATGCGCTACACTTCCTTCGGTCGCCATTTCACAAAGGTGGAAAAACTAGAAGAGATTGCTGATAGGCTCCATTGGTACGTAAAGAATGGAGATATGATAGTAGACTTCTGTTGTGGTGCTAATGATTTCAGCATCATAATGAATAAAAAGCTTGAAGAGACGGGGAAGAAGTGCTTTTACAAAAACTATGACTTCATTCAACCGAAGAACGATTTCAATTTTGAGAAGAGAGATTGGATGACTGTTCAACCAAAGGAGTTACCGTCAGGGTCACACTTGATCATGGGGTTGAACCCTCCTTTCGGAGTTAAAGCATCTTTGGCAAACAAGTTTATTGACAAGGCTCTCGAGTTCAATCCAAAGATTCTTATTCTTATTGTTCCACCAGAAACTCAAAGGTTAAATGAAAAGAATTCACCTTATGACCTGATTTGGAAAGATGAGCGGTTTCTGTCAGGAAAGTCATTCTATCTCCCTGGATCTGTTGATGGGAATGACAAACAATTGGAGCAATGGAATGTGACGCCACCACCCCTGTATCTTTGGAGTCGTCCTGATTGGTCTGCTGAGAACAAGGCTATAGCTGAAGCGCATGGTCACAACTCTGCATCACAAGGGTTTATGGAAGAAGATCAATCTGACTGTCTAATCCCTGATCATTCAGTAGTTAATGATGAGCATTATGGTCAAACACTTGTGCAGATGGATGATGATCCCATAAAGACTGATAGTCCCAAGGATGTTGCAGGAGGGTCAGTTGTGACGCAGGTATTAGAGGGGTCTTGTAAGATCAGTGTTGACAGAGATGGCCATGTGAGTCCTCGTCATGGAAAGAACCACATTGAAGAGATATCAGGGAAACTTCAGTGTGGTGGCAGAGAAGAGCATCGAAGTTGTATGCTTGAGAAATCTTCAGAAAAAAAACTAGATGGTGTAAAGGTTTCTGGTAGTGAGATACGAAAGGAAATGCTGCCACACACTGAGCCTGCTGAAAAAGGAAATCAGCATTCTGAGCCCAGCAATTCTGGTTCTAATATGGAGATAGAAACTACTGATAGTGGGACCCACGCCAACGTTGCTGATGATACAGGCAGAAGCTTAGCCATGAGCAGTGATGAGGCGTACTCCAGTCTGCCTCGTAGATGGAGCATTGCTGCTAATTCTGGTTCTGGTTATAGGGCTACAAACGTGGAGCAACTGTTTGTGGGGCACATGAGGGAAAGGTCAGATCGCCTTGGTTATGGACCATATTTGAATCAGGTAGAAGACCCATTTAGGAGGGAGTCTGACATACGCTCGCAGGTTCGCCTTTATGGTCGGCCAGATTTGGATCCTTTAAGAAGTAGTTATCAAGTGGGTCAGAATCCTGTAAGTGGCCAGATTGGATCGTATCCCTTTACTTATGGCCATACTCATTTTGGTTCAGCAGCTGGGTCATCTTACAGAAGTAATACATCAGCCATGCAGCGGTATGCGCCTCGGTTGGATGAATTGAACCACATGAGGATGGGTGCCTTAGGACCTGAGCCTAGTTTAGGATATGACCCGCACGTGTTCAGTAGCAACGTCCCTTTTGATCCCAGGGCACCCCGACCTGGTCAGCATGGTGGCCCCATGGGGTTTGCTCCTGGTCCTCACCAAAGCTATTCAAGCCAAAATTCAGCAGGTTGGCTGAACGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006950 GO:0006952 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009791 GO:0009889 GO:0009893 GO:0009909 GO:0009911 GO:0009987 GO:0010228 GO:0010468 GO:0010556 GO:0010604 GO:0010638 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030154 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031326 GO:0031399 GO:0031401 GO:0031440 GO:0031935 GO:0031937 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0033043 GO:0033044 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043954 GO:0044030 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048468 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050684 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051052 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051276 GO:0051570 GO:0051574 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060968 GO:0061085 GO:0061087 GO:0061458 GO:0065007 GO:0070827 GO:0070828 GO:0070829 GO:0071840 GO:0080090 GO:0090436 GO:0097159 GO:0098542 GO:0099402 GO:0140110 GO:1900109 GO:1900111 GO:1900363 GO:1901363 GO:1902275 GO:1903311 GO:1903506 GO:1905269 GO:2000024 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNMT1-RFD

Protein Analysis

1257

Amino Acids

141.64

Weight (kDa)

6.12

Isoelectric Point (pI)

48.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000343)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48090 AT5G48090 AT5G48090 AT5G55390 AT5G55390 AT5G55390
fragaria_vesca FvH4_3g23690 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160
malus_domestica MD03G1191000.v1.1 MD11G1207800.v1.1 MD11G1208000.v1.1
prunus_persica Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227600_v2.0.a1 Prupe.4G227700_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1
pyrus_communis pycom01g03400 pycom03g14420 pycom11g18100 pycom11g18140 pycom11g18150 pycom11g18160
rosa_chinensis RchiOBHm_Chr2g0145981 RchiOBHm_Chr4g0405241 RchiOBHm_Chr4g0405271 RchiOBHm_Chr5g0016201 RchiOBHm_Chr5g0041831 RchiOBHm_Chr5g0041871 RchiOBHm_Chr5g0041881 RchiOBHm_Chr5g0059241
rosa_laevigata RLG00000002117 RLG00000008861 RLG00000008862 RLG00000011000 RLG00000033216 RLG00000034097 RLG00000034101
rosa_multiflora Rmu_sc0000161.1_g000001 Rmu_sc0000861.1_g000040 Rmu_sc0007522.1_g000003 Rmu_sc0009443.1_g000015 Rmu_sc0022129.1_g000001 Rmu_sc0042315.1_g000001
rosa_roxburghii Rroxscaffold_1G00038660 Rroxscaffold_1G00038690 Rroxscaffold_5G00349560 Rroxscaffold_5G00349610 Rroxscaffold_6G00388370 Rroxscaffold_7G00188740
rosa_rugosa Rorug03G0199700 Rorug04G0055400 Rorug04G0055500 Rorug04G0055900 Rorug04G0056000 Rorug04G0056100 Rorug04G0056100 Rorug04G0056200 Rorug05G0195600 Rorug05G0195700 Rorug05G0195800 Rorug05G0195900 Rorug05G0196800 Rorug05G0385000
rosa_samantha Rh4AG129900 Rh4AG130100 Rh4BG124200 Rh4BG124400 Rh4BG124500 Rh4CG137200 Rh4CG137300 Rh4DG123500 Rh4DG123700 Rh5AG280800 Rh5AG281400 Rh5BG286700 Rh5BG287000 Rh5BG397800 Rh5CG318100 Rh5CG318600 Rh5CG421600 Rh5DG132300 Rh5DG132400 Rh5DG295400 Rh5DG295700 Rh7BG475300
rosa_wichuraiana Rw0G001330 Rw0G005730 Rw4G008670 Rw4G010510 Rw4G010540 Rw5G026450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1853
Acc36I ACCTGC 4 cut(s) 196, 2845, 3379, 3743
AccB1I GGYRCC 3 cut(s) 4, 3599, 3673
AccBSI CCGCTC 1 cut(s) 2533
AccI GTMKAC 1 cut(s) 2190
AciI CCGC 5 cut(s) 870, 1181, 2533, 3556, 3635
AclI AACGTT 1 cut(s) 3162
AcoI YGGCCR 4 cut(s) 2896, 3407, 3463, 3493
AcsI RAATTY 5 cut(s) 820, 1310, 1451, 2500, 3745
AcvI CACGTG 1 cut(s) 3640
AcyI GRCGYC 1 cut(s) 2612
AfaI GTAC 5 cut(s) 87, 1245, 1548, 2165, 3212
AfiI CCNNNNNNNGG 9 cut(s) 552, 1140, 1156, 2390, 2915, 3461, 3555, 3623, 3683
AflIII ACRYGT 1 cut(s) 3639
AhdI GACNNNNNGTC 1 cut(s) 2817
AhlI ACTAGT 1 cut(s) 1535
AjnI CCWGG 7 cut(s) 450, 612, 1839, 2563, 3668, 3682, 3715
AjuI GAANNNNNNNTTGG 2 cut(s) 1625, 1657
AleI CACNNNNGTG 1 cut(s) 2123
Alw21I GWGCWC 1 cut(s) 261
Alw26I GTCTC 4 cut(s) 97, 368, 1179, 2240
AlwNI CAGNNNCTG 3 cut(s) 1495, 2006, 3518
Ama87I CYCGRG 2 cut(s) 593, 2435
AoxI GGCC 6 cut(s) 434, 2896, 3407, 3463, 3493, 3697
ApeKI GCWGC 7 cut(s) 850, 1784, 1823, 3058, 3242, 3515, 3553
ApoI RAATTY 5 cut(s) 820, 1310, 1451, 2500, 3745
ArsI GACNNNNNNTTYG 2 cut(s) 650, 682
Asp700I GAANNNNTTC 3 cut(s) 1398, 1438, 2300
AspLEI GCGC 4 cut(s) 2017, 2094, 2680, 3565
AspS9I GGNCC 6 cut(s) 735, 3150, 3332, 3608, 3698, 3719
AsuC2I CCSGG 2 cut(s) 594, 595
AsuHPI GGTGA 7 cut(s) 466, 773, 1588, 1658, 1727, 2496, 3716
AsuII TTCGAA 1 cut(s) 1954
AvaI CYCGRG 2 cut(s) 593, 2435
AvaII GGWCC 5 cut(s) 735, 3150, 3332, 3608, 3719
AxyI CCTNAGG 2 cut(s) 731, 3604
BaeGI GKGCMC 3 cut(s) 1046, 3300, 3676
BaeI ACNNNNGTAYC 2 cut(s) 2609, 2642
BalI TGGCCA 3 cut(s) 2898, 3465, 3495
BamHI GGATCC 3 cut(s) 241, 881, 3418
BanI GGYRCC 3 cut(s) 4, 3599, 3673
BanII GRGCYC 1 cut(s) 3105
BarI GAAGNNNNNNTAC 4 cut(s) 1215, 1247, 2249, 2281
BbrPI CACGTG 1 cut(s) 3640
BbsI GAAGAC 4 cut(s) 645, 1340, 1361, 3360
Bbv12I GWGCWC 1 cut(s) 261
BbvCI CCTCAGC 1 cut(s) 1623
BbvI GCAGC 7 cut(s) 862, 1796, 1810, 3045, 3229, 3527, 3565
BceAI ACGGC 3 cut(s) 421, 1485, 1974
BcgI CGANNNNNNTGC 2 cut(s) 1872, 1906
BciT130I CCWGG 7 cut(s) 452, 614, 1841, 2565, 3670, 3684, 3717
BciVI GTATCC 1 cut(s) 3489
BclI TGATCA 3 cut(s) 1648, 2367, 2743
BcnI CCSGG 2 cut(s) 594, 595
BcoDI GTCTC 4 cut(s) 97, 368, 1179, 2240
BcuI ACTAGT 1 cut(s) 1535
BfaI CTAG 9 cut(s) 470, 878, 1403, 1485, 1536, 1973, 2135, 3014, 3618
BfmI CTRYAG 3 cut(s) 582, 1114, 2667
BfuAI ACCTGC 4 cut(s) 196, 2845, 3379, 3743
BfuI GTATCC 1 cut(s) 3489
BglII AGATCT 3 cut(s) 703, 893, 1225
BisI GCNGC 7 cut(s) 851, 1785, 1824, 3059, 3243, 3516, 3554
BlpI GCTNAGC 1 cut(s) 3187
BlsI GCNGC 7 cut(s) 852, 1786, 1825, 3060, 3244, 3517, 3555
Bme1390I CCNGG 9 cut(s) 452, 594, 595, 614, 1841, 2565, 3670, 3684, 3717
Bme18I GGWCC 5 cut(s) 735, 3150, 3332, 3608, 3719
BmeRI GACNNNNNGTC 1 cut(s) 2817
BmeT110I CYCGRG 2 cut(s) 593, 2435
BmgT120I GGNCC 6 cut(s) 735, 3150, 3332, 3608, 3698, 3719
BmrFI CCNGG 9 cut(s) 452, 594, 595, 614, 1841, 2565, 3670, 3684, 3717
BmrI ACTGGG 2 cut(s) 286, 1931
BmuI ACTGGG 2 cut(s) 286, 1931
BpiI GAAGAC 4 cut(s) 645, 1340, 1361, 3360
BplI GAGNNNNNCTC 2 cut(s) 3197, 3229
BpmI CTGGAG 1 cut(s) 3199
Bpu10I CCTNAGC 3 cut(s) 502, 1623, 3612
Bpu1102I GCTNAGC 1 cut(s) 3187
Bpu14I TTCGAA 1 cut(s) 1954
BpuEI CTTGAG 2 cut(s) 1028, 3011
BpuMI CCSGG 2 cut(s) 594, 595
BsaAI YACGTR 4 cut(s) 1041, 1306, 2167, 3640
BsaBI GATNNNNATC 2 cut(s) 2799, 3417
BsaHI GRCGYC 1 cut(s) 2612
BsaXI ACNNNNNCTCC 8 cut(s) 112, 142, 2336, 2366, 2829, 2859, 3272, 3302
Bsc4I CCNNNNNNNGG 9 cut(s) 552, 1140, 1156, 2390, 2915, 3461, 3555, 3623, 3683
Bse1I ACTGG 4 cut(s) 281, 1363, 1926, 3216
Bse21I CCTNAGG 2 cut(s) 731, 3604
Bse3DI GCAATG 2 cut(s) 2606, 3237
Bse8I GATNNNNATC 2 cut(s) 2799, 3417
BseBI CCWGG 7 cut(s) 452, 614, 1841, 2565, 3670, 3684, 3717
BseJI GATNNNNATC 2 cut(s) 2799, 3417
BseLI CCNNNNNNNGG 9 cut(s) 552, 1140, 1156, 2390, 2915, 3461, 3555, 3623, 3683
BseMI GCAATG 2 cut(s) 2606, 3237
BseNI ACTGG 4 cut(s) 281, 1363, 1926, 3216
BseRI GAGGAG 2 cut(s) 1211, 1810
BseSI GKGCMC 3 cut(s) 1046, 3300, 3676
BseXI GCAGC 7 cut(s) 862, 1796, 1810, 3045, 3229, 3527, 3565
BseYI CCCAGC 2 cut(s) 3104, 3518
BsgI GTGCAG 2 cut(s) 362, 2807
Bsh1285I CGRYCG 1 cut(s) 2110
BshFI GGCC 6 cut(s) 436, 2898, 3409, 3465, 3495, 3699
BshNI GGYRCC 3 cut(s) 4, 3599, 3673
BsiEI CGRYCG 1 cut(s) 2110
BsiHKAI GWGCWC 1 cut(s) 261
BsiHKCI CYCGRG 2 cut(s) 593, 2435
BsiSI CCGG 1 cut(s) 594
BslFI GGGAC 3 cut(s) 2805, 3163, 3641
BslI CCNNNNNNNGG 9 cut(s) 552, 1140, 1156, 2390, 2915, 3461, 3555, 3623, 3683
BsmAI GTCTC 4 cut(s) 97, 368, 1179, 2240
BsmBI CGTCTC 3 cut(s) 97, 1179, 2240
BsmFI GGGAC 3 cut(s) 2805, 3163, 3641
BsmI GAATGC 2 cut(s) 2094, 3094
BsnI GGCC 6 cut(s) 436, 2898, 3409, 3465, 3495, 3699
BsoBI CYCGRG 2 cut(s) 593, 2435
Bsp119I TTCGAA 1 cut(s) 1954
Bsp1286I GDGCHC 5 cut(s) 261, 1046, 3105, 3300, 3676
Bsp1720I GCTNAGC 1 cut(s) 3187
Bsp19I CCATGG 1 cut(s) 3702
BspACI CCGC 5 cut(s) 870, 1181, 2533, 3556, 3635
BspANI GGCC 6 cut(s) 436, 2898, 3409, 3465, 3495, 3699
BspMI ACCTGC 4 cut(s) 196, 2845, 3379, 3743
BspQI GCTCTTC 3 cut(s) 296, 996, 2964
BspT104I TTCGAA 1 cut(s) 1954
BspT107I GGYRCC 3 cut(s) 4, 3599, 3673
BsrBI CCGCTC 1 cut(s) 2533
BsrDI GCAATG 2 cut(s) 2606, 3237
BsrI ACTGG 4 cut(s) 281, 1363, 1926, 3216
BssNI GRCGYC 1 cut(s) 2612
BssT1I CCWWGG 4 cut(s) 296, 2823, 3322, 3702
Bst2UI CCWGG 7 cut(s) 452, 614, 1841, 2565, 3670, 3684, 3717
Bst4CI ACNGT 8 cut(s) 9, 340, 839, 1735, 2332, 2352, 2732, 3288
BstACI GRCGYC 1 cut(s) 2612
BstAPI GCANNNNNTGC 1 cut(s) 2089
BstBAI YACGTR 4 cut(s) 1041, 1306, 2167, 3640
BstBI TTCGAA 1 cut(s) 1954
BstC8I GCNNGC 5 cut(s) 35, 868, 1151, 3075, 3386
BstDSI CCRYGG 2 cut(s) 1154, 3702
BstENI CCTNNNNNAGG 2 cut(s) 1138, 3621
BstHHI GCGC 4 cut(s) 2017, 2094, 2680, 3565
BstMAI GTCTC 4 cut(s) 97, 368, 1179, 2240
BstMCI CGRYCG 1 cut(s) 2110
BstMWI GCNNNNNNNGC 9 cut(s) 292, 867, 2012, 2089, 2408, 3100, 3164, 3562, 3738
BstNI CCWGG 7 cut(s) 452, 614, 1841, 2565, 3670, 3684, 3717
BstNSI RCATGY 1 cut(s) 466
BstSCI CCNGG 9 cut(s) 450, 592, 593, 612, 1839, 2563, 3668, 3682, 3715
BstSFI CTRYAG 3 cut(s) 582, 1114, 2667
BstSLI GKGCMC 3 cut(s) 1046, 3300, 3676
BstSNI TACGTA 1 cut(s) 2167
BstV1I GCAGC 7 cut(s) 862, 1796, 1810, 3045, 3229, 3527, 3565
BstV2I GAAGAC 4 cut(s) 645, 1340, 1361, 3360
BstX2I RGATCY 8 cut(s) 241, 703, 881, 893, 1090, 1225, 2567, 3418
BstXI CCANNNNNNTGG 1 cut(s) 117
BstYI RGATCY 8 cut(s) 241, 703, 881, 893, 1090, 1225, 2567, 3418
Bsu36I CCTNAGG 2 cut(s) 731, 3604
BsuI GTATCC 1 cut(s) 3489
BsuRI GGCC 6 cut(s) 436, 2898, 3409, 3465, 3495, 3699
BtgI CCRYGG 2 cut(s) 1154, 3702
BtgZI GCGATG 1 cut(s) 827
BtsI GCAGTG 4 cut(s) 171, 350, 1768, 3205
BveI ACCTGC 4 cut(s) 196, 2845, 3379, 3743
Cac8I GCNNGC 5 cut(s) 35, 868, 1151, 3075, 3386
CaiI CAGNNNCTG 3 cut(s) 1495, 2006, 3518
CfoI GCGC 4 cut(s) 2017, 2094, 2680, 3565
Cfr13I GGNCC 6 cut(s) 735, 3150, 3332, 3608, 3698, 3719
Cfr9I CCCGGG 1 cut(s) 593
CseI GACGC 2 cut(s) 2620, 2860
CsiI ACCWGGT 2 cut(s) 450, 3682
Csp6I GTAC 5 cut(s) 86, 1244, 1547, 2164, 3211
CviQI GTAC 5 cut(s) 86, 1244, 1547, 2164, 3211
DriI GACNNNNNGTC 1 cut(s) 2817
EaeI YGGCCR 4 cut(s) 2896, 3407, 3463, 3493
Eam1105I GACNNNNNGTC 1 cut(s) 2817
Eco105I TACGTA 1 cut(s) 2167
Eco130I CCWWGG 4 cut(s) 296, 2823, 3322, 3702
Eco24I GRGCYC 1 cut(s) 3105
Eco32I GATATC 2 cut(s) 159, 2940
Eco47I GGWCC 5 cut(s) 735, 3150, 3332, 3608, 3719
Eco72I CACGTG 1 cut(s) 3640
Eco81I CCTNAGG 2 cut(s) 731, 3604
Eco88I CYCGRG 2 cut(s) 593, 2435
EcoNI CCTNNNNNAGG 2 cut(s) 1138, 3621
EcoO109I RGGNCCY 3 cut(s) 735, 3150, 3608
EcoRI GAATTC 2 cut(s) 1451, 2500
EcoRII CCWGG 7 cut(s) 450, 612, 1839, 2563, 3668, 3682, 3715
EcoRV GATATC 2 cut(s) 159, 2940
EcoT14I CCWWGG 4 cut(s) 296, 2823, 3322, 3702
EcoT22I ATGCAT 1 cut(s) 1885
EcoT38I GRGCYC 1 cut(s) 3105
ErhI CCWWGG 4 cut(s) 296, 2823, 3322, 3702
Esp3I CGTCTC 3 cut(s) 97, 1179, 2240
FalI AAGNNNNNCTT 4 cut(s) 2052, 2084, 2246, 2278
FaqI GGGAC 3 cut(s) 2805, 3163, 3641
FauI CCCGC 3 cut(s) 863, 1174, 3642
FbaI TGATCA 3 cut(s) 1648, 2367, 2743
FblI GTMKAC 1 cut(s) 2190
Fnu4HI GCNGC 7 cut(s) 851, 1785, 1824, 3059, 3243, 3516, 3554
FriOI GRGCYC 1 cut(s) 3105
Fsp4HI GCNGC 7 cut(s) 851, 1785, 1824, 3059, 3243, 3516, 3554
FspBI CTAG 9 cut(s) 470, 878, 1403, 1485, 1536, 1973, 2135, 3014, 3618
GlaI GCGC 4 cut(s) 2016, 2093, 2679, 3564
GluI GCNGC 7 cut(s) 851, 1785, 1824, 3059, 3243, 3516, 3554
GsaI CCCAGC 2 cut(s) 3108, 3522
GsuI CTGGAG 1 cut(s) 3199
HaeIII GGCC 6 cut(s) 436, 2898, 3409, 3465, 3495, 3699
HapII CCGG 1 cut(s) 594
HgaI GACGC 2 cut(s) 2620, 2860
HhaI GCGC 4 cut(s) 2017, 2094, 2680, 3565
Hin1I GRCGYC 1 cut(s) 2612
Hin6I GCGC 4 cut(s) 2015, 2092, 2678, 3563
HinP1I GCGC 4 cut(s) 2015, 2092, 2678, 3563
HincII GTYRAC 2 cut(s) 526, 2887
HindII GTYRAC 2 cut(s) 526, 2887
HindIII AAGCTT 2 cut(s) 2237, 3184
HpaII CCGG 1 cut(s) 594
HphI GGTGA 7 cut(s) 466, 773, 1588, 1658, 1727, 2496, 3716
Hpy166II GTNNAC 6 cut(s) 526, 1070, 1244, 1706, 2191, 2887
Hpy8I GTNNAC 6 cut(s) 526, 1070, 1244, 1706, 2191, 2887
Hpy99I CGWCG 3 cut(s) 80, 442, 1894
HpyAV CCTTC 6 cut(s) 359, 713, 1663, 1928, 1973, 2113
HpyCH4III ACNGT 8 cut(s) 9, 340, 839, 1735, 2332, 2352, 2732, 3288
HpyCH4IV ACGT 8 cut(s) 1040, 1188, 1305, 2166, 3162, 3276, 3639, 3654
HpyF10VI GCNNNNNNNGC 9 cut(s) 292, 867, 2012, 2089, 2408, 3100, 3164, 3562, 3738
HpySE526I ACGT 8 cut(s) 1040, 1188, 1305, 2166, 3162, 3276, 3639, 3654
Hsp92I GRCGYC 1 cut(s) 2612
HspAI GCGC 4 cut(s) 2015, 2092, 2678, 3563
KflI GGGWCCC 1 cut(s) 3150
Ksp22I TGATCA 3 cut(s) 1648, 2367, 2743
LguI GCTCTTC 3 cut(s) 296, 996, 2964
LmnI GCTCC 6 cut(s) 1477, 2160, 2596, 3234, 3280, 3718
Lsp1109I GCAGC 7 cut(s) 862, 1796, 1810, 3045, 3229, 3527, 3565
MabI ACCWGGT 2 cut(s) 450, 3682
MaeI CTAG 9 cut(s) 470, 878, 1403, 1485, 1536, 1973, 2135, 3014, 3618
MaeII ACGT 8 cut(s) 1040, 1188, 1305, 2166, 3162, 3276, 3639, 3654
MbiI CCGCTC 1 cut(s) 2533
MfeI CAATTG 2 cut(s) 111, 2591
MflI RGATCY 8 cut(s) 241, 703, 881, 893, 1090, 1225, 2567, 3418
MhlI GDGCHC 5 cut(s) 261, 1046, 3105, 3300, 3676
MlsI TGGCCA 3 cut(s) 2898, 3465, 3495
MluNI TGGCCA 3 cut(s) 2898, 3465, 3495
MlyI GAGTC 6 cut(s) 11, 142, 653, 2644, 2914, 3380
MmeI TCCRAC 1 cut(s) 3552
Mox20I TGGCCA 3 cut(s) 2898, 3465, 3495
Mph1103I ATGCAT 1 cut(s) 1885
MroXI GAANNNNTTC 3 cut(s) 1398, 1438, 2300
MscI TGGCCA 3 cut(s) 2898, 3465, 3495
MslI CAYNNNNRTG 3 cut(s) 2123, 2225, 3593
Msp20I TGGCCA 3 cut(s) 2898, 3465, 3495
MspA1I CMGCKG 2 cut(s) 3518, 3556
MspI CCGG 1 cut(s) 594
MspR9I CCNGG 9 cut(s) 452, 594, 595, 614, 1841, 2565, 3670, 3684, 3717
MunI CAATTG 2 cut(s) 111, 2591
Mva1269I GAATGC 2 cut(s) 2094, 3094
MvaI CCWGG 7 cut(s) 452, 614, 1841, 2565, 3670, 3684, 3717
MwoI GCNNNNNNNGC 9 cut(s) 292, 867, 2012, 2089, 2408, 3100, 3164, 3562, 3738
NciI CCSGG 2 cut(s) 594, 595
NcoI CCATGG 1 cut(s) 3702
NmeAIII GCCGAG 2 cut(s) 130, 931
NmuCI GTSAC 5 cut(s) 1420, 2358, 2608, 2684, 2848
NsiI ATGCAT 1 cut(s) 1885
NspI RCATGY 1 cut(s) 466
NspV TTCGAA 1 cut(s) 1954
OliI CACNNNNGTG 1 cut(s) 2123
PaeR7I CTCGAG 1 cut(s) 2435
PasI CCCWGGG 1 cut(s) 3669
PciSI GCTCTTC 3 cut(s) 296, 996, 2964
PctI GAATGC 2 cut(s) 2094, 3094
PdmI GAANNNNTTC 3 cut(s) 1398, 1438, 2300
PflFI GACNNNGTC 1 cut(s) 3684
PkrI GCNGC 7 cut(s) 852, 1786, 1825, 3060, 3244, 3517, 3555
PleI GAGTC 6 cut(s) 11, 142, 652, 2643, 2913, 3379
PmaCI CACGTG 1 cut(s) 3640
PmlI CACGTG 1 cut(s) 3640
PpsI GAGTC 6 cut(s) 11, 142, 652, 2643, 2913, 3379
Ppu21I YACGTR 4 cut(s) 1041, 1306, 2167, 3640
PpuMI RGGWCCY 3 cut(s) 735, 3150, 3608
PsiI TTATAA 1 cut(s) 1853
Psp1406I AACGTT 1 cut(s) 3162
Psp5II RGGWCCY 3 cut(s) 735, 3150, 3608
Psp6I CCWGG 7 cut(s) 450, 612, 1839, 2563, 3668, 3682, 3715
PspCI CACGTG 1 cut(s) 3640
PspFI CCCAGC 2 cut(s) 3104, 3518
PspGI CCWGG 7 cut(s) 450, 612, 1839, 2563, 3668, 3682, 3715
PspPI GGNCC 6 cut(s) 735, 3150, 3332, 3608, 3698, 3719
PspPPI RGGWCCY 3 cut(s) 735, 3150, 3608
PstNI CAGNNNCTG 3 cut(s) 1495, 2006, 3518
PsuI RGATCY 8 cut(s) 241, 703, 881, 893, 1090, 1225, 2567, 3418
PsyI GACNNNGTC 1 cut(s) 3684
PvuII CAGCTG 1 cut(s) 3518
RsaI GTAC 5 cut(s) 87, 1245, 1548, 2165, 3212
RsaNI GTAC 5 cut(s) 86, 1244, 1547, 2164, 3211
RseI CAYNNNNRTG 3 cut(s) 2123, 2225, 3593
SapI GCTCTTC 3 cut(s) 296, 996, 2964
SatI GCNGC 7 cut(s) 851, 1785, 1824, 3059, 3243, 3516, 3554
Sau96I GGNCC 6 cut(s) 735, 3150, 3332, 3608, 3698, 3719
SchI GAGTC 6 cut(s) 11, 142, 653, 2644, 2914, 3380
ScrFI CCNGG 9 cut(s) 452, 594, 595, 614, 1841, 2565, 3670, 3684, 3717
SduI GDGCHC 5 cut(s) 261, 1046, 3105, 3300, 3676
SexAI ACCWGGT 2 cut(s) 450, 3682
SfcI CTRYAG 3 cut(s) 582, 1114, 2667
Sfr274I CTCGAG 1 cut(s) 2435
SfuI TTCGAA 1 cut(s) 1954
SinI GGWCC 5 cut(s) 735, 3150, 3332, 3608, 3719
SlaI CTCGAG 1 cut(s) 2435
SmaI CCCGGG 1 cut(s) 595
SmiMI CAYNNNNRTG 3 cut(s) 2123, 2225, 3593
SmlI CTYRAG 3 cut(s) 1007, 2435, 2990
SmoI CTYRAG 3 cut(s) 1007, 2435, 2990
SnaBI TACGTA 1 cut(s) 2167
SpeI ACTAGT 1 cut(s) 1535
SsiI CCGC 5 cut(s) 870, 1181, 2533, 3556, 3635
SspMI CTAG 9 cut(s) 470, 878, 1403, 1485, 1536, 1973, 2135, 3014, 3618
StyD4I CCNGG 9 cut(s) 450, 592, 593, 612, 1839, 2563, 3668, 3682, 3715
StyI CCWWGG 4 cut(s) 296, 2823, 3322, 3702
TaaI ACNGT 8 cut(s) 9, 340, 839, 1735, 2332, 2352, 2732, 3288
TaiI ACGT 8 cut(s) 1043, 1191, 1308, 2169, 3165, 3279, 3642, 3657
TaqI TCGA 4 cut(s) 1892, 1954, 2436, 2977
TaqII GACCGA 1 cut(s) 2096
TatI WGTACW 1 cut(s) 1243
TseFI GTSAC 5 cut(s) 1420, 2358, 2608, 2684, 2848
TseI GCWGC 7 cut(s) 850, 1784, 1823, 3058, 3242, 3515, 3553
Tsp45I GTSAC 5 cut(s) 1420, 2358, 2608, 2684, 2848
TspGWI ACGGA 4 cut(s) 1445, 1606, 1981, 2100
TspMI CCCGGG 1 cut(s) 593
Tth111I GACNNNGTC 1 cut(s) 3684
VpaK11BI GGWCC 5 cut(s) 735, 3150, 3332, 3608, 3719
XagI CCTNNNNNAGG 2 cut(s) 1138, 3621
XapI RAATTY 5 cut(s) 820, 1310, 1451, 2500, 3745
XbaI TCTAGA 2 cut(s) 1402, 1484
XceI RCATGY 1 cut(s) 466
XcmI CCANNNNNNNNNTGG 1 cut(s) 3503
XhoI CTCGAG 1 cut(s) 2435
XmaI CCCGGG 1 cut(s) 593
XmiI GTMKAC 1 cut(s) 2190
XmnI GAANNNNTTC 3 cut(s) 1398, 1438, 2300
XspI CTAG 9 cut(s) 470, 878, 1403, 1485, 1536, 1973, 2135, 3014, 3618
Zsp2I ATGCAT 1 cut(s) 1885
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.