metal ion binding
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DNMT1-RFD | PF12047 | 100 - 222 | 5.7e-09 | Cytosine specific DNA methyltransferase replication foci domain |
| PHD_NSD | PF22908 | 363 - 432 | 5.2e-19 | Histone-lysine N-methyltransferase NSD-like, PHD zinc finger |
| PHDvar_NSD | PF23004 | 434 - 470 | 6.9e-06 | Histone-lysine N-methyltransferase NSD-like, variant PHD zinc finger |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 2527 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 2137, 2164 |
| AatII | GACGTC | 1 cut(s) | 2135 |
| Acc36I | ACCTGC | 1 cut(s) | 2527 |
| AccB1I | GGYRCC | 3 cut(s) | 274, 966, 1001 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1178 |
| AccBSI | CCGCTC | 1 cut(s) | 1777 |
| AccI | GTMKAC | 4 cut(s) | 64, 1483, 1644, 1962 |
| AciI | CCGC | 6 cut(s) | 224, 423, 998, 1777, 2936, 3125 |
| AclWI | GGATC | 5 cut(s) | 533, 711, 1015, 1832, 3170 |
| AcoI | YGGCCR | 1 cut(s) | 768 |
| AcsI | RAATTY | 8 cut(s) | 97, 1060, 1520, 1550, 1634, 2864, 2944, 3148 |
| AcuI | CTGAAG | 7 cut(s) | 129, 675, 843, 1263, 2025, 2369, 2450 |
| AcyI | GRCGYC | 1 cut(s) | 2132 |
| AdeI | CACNNNGTG | 3 cut(s) | 604, 1202, 2504 |
| AfaI | GTAC | 4 cut(s) | 1379, 1845, 2340, 3025 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 719, 1178, 1399, 2769, 2774, 3086 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 285 |
| AhlI | ACTAGT | 1 cut(s) | 1855 |
| AjnI | CCWGG | 5 cut(s) | 2553, 2767, 3085, 3093, 3118 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1105, 1137 |
| Alw21I | GWGCWC | 7 cut(s) | 591, 1580, 2032, 2262, 2674, 2729, 3079 |
| Alw26I | GTCTC | 7 cut(s) | 109, 160, 346, 1644, 1960, 2150, 2661 |
| Alw44I | GTGCAC | 2 cut(s) | 587, 2725 |
| AlwI | GGATC | 5 cut(s) | 533, 711, 1015, 1832, 3170 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1145, 2854 |
| Ama87I | CYCGRG | 1 cut(s) | 2806 |
| AoxI | GGCC | 2 cut(s) | 680, 768 |
| ApaLI | GTGCAC | 2 cut(s) | 587, 2725 |
| ApeKI | GCWGC | 3 cut(s) | 1145, 1302, 3127 |
| ApoI | RAATTY | 8 cut(s) | 97, 1060, 1520, 1550, 1634, 2864, 2944, 3148 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 1675, 1996, 2215, 2446 |
| AspS9I | GGNCC | 2 cut(s) | 1540, 3122 |
| AsuHPI | GGTGA | 8 cut(s) | 117, 389, 734, 923, 2446, 2516, 2551, 2633 |
| AvaI | CYCGRG | 1 cut(s) | 2806 |
| AvaII | GGWCC | 2 cut(s) | 1540, 3122 |
| AxyI | CCTNAGG | 2 cut(s) | 971, 1138 |
| BaeGI | GKGCMC | 3 cut(s) | 591, 748, 2729 |
| BalI | TGGCCA | 1 cut(s) | 770 |
| BanI | GGYRCC | 3 cut(s) | 274, 966, 1001 |
| BanII | GRGCYC | 1 cut(s) | 2262 |
| BauI | CACGAG | 1 cut(s) | 2731 |
| BbsI | GAAGAC | 3 cut(s) | 794, 1604, 1760 |
| Bbv12I | GWGCWC | 7 cut(s) | 591, 1580, 2032, 2262, 2674, 2729, 3079 |
| BbvCI | CCTCAGC | 1 cut(s) | 1149 |
| BbvI | GCAGC | 3 cut(s) | 1132, 1289, 3139 |
| BceAI | ACGGC | 1 cut(s) | 2354 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 194, 228 |
| BciT130I | CCWGG | 5 cut(s) | 2555, 2769, 3087, 3095, 3120 |
| BciVI | GTATCC | 3 cut(s) | 811, 1177, 2551 |
| BcoDI | GTCTC | 7 cut(s) | 109, 160, 346, 1644, 1960, 2150, 2661 |
| BcuI | ACTAGT | 1 cut(s) | 1855 |
| BfmI | CTRYAG | 5 cut(s) | 1713, 1959, 2200, 2265, 3143 |
| BfuAI | ACCTGC | 1 cut(s) | 2527 |
| BfuI | GTATCC | 3 cut(s) | 811, 1177, 2551 |
| BisI | GCNGC | 4 cut(s) | 225, 1146, 1303, 3128 |
| BlsI | GCNGC | 4 cut(s) | 226, 1147, 1304, 3129 |
| BmcAI | AGTACT | 1 cut(s) | 3025 |
| Bme1390I | CCNGG | 5 cut(s) | 2555, 2769, 3087, 3095, 3120 |
| Bme18I | GGWCC | 2 cut(s) | 1540, 3122 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 285 |
| BmeT110I | CYCGRG | 1 cut(s) | 2806 |
| BmgT120I | GGNCC | 2 cut(s) | 1540, 3122 |
| BmiI | GGNNCC | 7 cut(s) | 276, 421, 968, 1003, 1123, 1541, 2552 |
| BmrFI | CCNGG | 5 cut(s) | 2555, 2769, 3087, 3095, 3120 |
| BmrI | ACTGGG | 1 cut(s) | 2510 |
| BmsI | GCATC | 6 cut(s) | 78, 1044, 2557, 2647, 2701, 2898 |
| BmuI | ACTGGG | 1 cut(s) | 2510 |
| BpiI | GAAGAC | 3 cut(s) | 794, 1604, 1760 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1978, 2010 |
| BpmI | CTGGAG | 1 cut(s) | 648 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1149 |
| BpuEI | CTTGAG | 1 cut(s) | 1271 |
| Bsa29I | ATCGAT | 3 cut(s) | 852, 897, 3165 |
| BsaAI | YACGTR | 1 cut(s) | 1546 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2631 |
| BsaHI | GRCGYC | 1 cut(s) | 2132 |
| BsaI | GGTCTC | 1 cut(s) | 1960 |
| BsaJI | CCNNGG | 5 cut(s) | 510, 542, 1397, 1680, 2768 |
| BsaWI | WCCGGW | 1 cut(s) | 2411 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 361, 391, 621, 651, 1641, 1671 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 719, 1178, 1399, 2769, 2774, 3086 |
| Bse1I | ACTGG | 3 cut(s) | 390, 1096, 2505 |
| Bse21I | CCTNAGG | 2 cut(s) | 971, 1138 |
| Bse3DI | GCAATG | 2 cut(s) | 234, 2785 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2631 |
| BseBI | CCWGG | 5 cut(s) | 2555, 2769, 3087, 3095, 3120 |
| BseCI | ATCGAT | 3 cut(s) | 852, 897, 3165 |
| BseDI | CCNNGG | 5 cut(s) | 510, 542, 1397, 1680, 2768 |
| BseGI | GGATG | 9 cut(s) | 337, 394, 1045, 1059, 1133, 1192, 1468, 2436, 2638 |
| BseJI | GATNNNNATC | 1 cut(s) | 2631 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 719, 1178, 1399, 2769, 2774, 3086 |
| BseMI | GCAATG | 2 cut(s) | 234, 2785 |
| BseMII | CTCAG | 9 cut(s) | 122, 483, 853, 981, 1140, 1152, 2472, 2523, 2846 |
| BseNI | ACTGG | 3 cut(s) | 390, 1096, 2505 |
| BseRI | GAGGAG | 2 cut(s) | 1007, 2002 |
| BseSI | GKGCMC | 3 cut(s) | 591, 748, 2729 |
| BseXI | GCAGC | 3 cut(s) | 1132, 1289, 3139 |
| BseYI | CCCAGC | 2 cut(s) | 2282, 2648 |
| BshFI | GGCC | 2 cut(s) | 682, 770 |
| BshNI | GGYRCC | 3 cut(s) | 274, 966, 1001 |
| BshVI | ATCGAT | 3 cut(s) | 852, 897, 3165 |
| BsiHKAI | GWGCWC | 7 cut(s) | 591, 1580, 2032, 2262, 2674, 2729, 3079 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2806 |
| BsiSI | CCGG | 2 cut(s) | 1005, 2412 |
| BslFI | GGGAC | 4 cut(s) | 1553, 2125, 2842, 2861 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 719, 1178, 1399, 2769, 2774, 3086 |
| BsmAI | GTCTC | 7 cut(s) | 109, 160, 346, 1644, 1960, 2150, 2661 |
| BsmFI | GGGAC | 4 cut(s) | 1553, 2125, 2842, 2861 |
| BsmI | GAATGC | 1 cut(s) | 77 |
| BsnI | GGCC | 2 cut(s) | 682, 770 |
| Bso31I | GGTCTC | 1 cut(s) | 1960 |
| BsoBI | CYCGRG | 1 cut(s) | 2806 |
| Bsp1286I | GDGCHC | 8 cut(s) | 591, 748, 1580, 2032, 2262, 2674, 2729, 3079 |
| BspACI | CCGC | 6 cut(s) | 224, 423, 998, 1777, 2936, 3125 |
| BspANI | GGCC | 2 cut(s) | 682, 770 |
| BspCNI | CTCAG | 9 cut(s) | 121, 484, 852, 982, 1141, 1151, 2473, 2524, 2847 |
| BspDI | ATCGAT | 3 cut(s) | 852, 897, 3165 |
| BspLI | GGNNCC | 7 cut(s) | 276, 421, 968, 1003, 1123, 1541, 2552 |
| BspMI | ACCTGC | 1 cut(s) | 2527 |
| BspPI | GGATC | 5 cut(s) | 533, 711, 1015, 1832, 3170 |
| BspQI | GCTCTTC | 4 cut(s) | 480, 542, 1790, 2502 |
| BspT107I | GGYRCC | 3 cut(s) | 274, 966, 1001 |
| BspTNI | GGTCTC | 1 cut(s) | 1960 |
| BsrBI | CCGCTC | 1 cut(s) | 1777 |
| BsrDI | GCAATG | 2 cut(s) | 234, 2785 |
| BsrI | ACTGG | 3 cut(s) | 390, 1096, 2505 |
| BssECI | CCNNGG | 5 cut(s) | 510, 542, 1397, 1680, 2768 |
| BssNAI | GTATAC | 1 cut(s) | 1484 |
| BssNI | GRCGYC | 1 cut(s) | 2132 |
| BssSI | CACGAG | 1 cut(s) | 2731 |
| BssT1I | CCWWGG | 2 cut(s) | 1397, 1680 |
| Bst1107I | GTATAC | 1 cut(s) | 1484 |
| Bst2BI | CACGAG | 1 cut(s) | 2731 |
| Bst2UI | CCWGG | 5 cut(s) | 2555, 2769, 3087, 3095, 3120 |
| BstACI | GRCGYC | 1 cut(s) | 2132 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2724 |
| BstBAI | YACGTR | 1 cut(s) | 1546 |
| BstC8I | GCNNGC | 4 cut(s) | 1361, 1394, 2716, 2887 |
| BstEII | GGTNACC | 1 cut(s) | 3089 |
| BstF5I | GGATG | 9 cut(s) | 337, 394, 1045, 1059, 1133, 1192, 1468, 2436, 2638 |
| BstMAI | GTCTC | 7 cut(s) | 109, 160, 346, 1644, 1960, 2150, 2661 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 66, 221, 538, 1715, 2257, 2542, 2724 |
| BstNI | CCWGG | 5 cut(s) | 2555, 2769, 3087, 3095, 3120 |
| BstNSI | RCATGY | 4 cut(s) | 186, 455, 712, 1363 |
| BstPI | GGTNACC | 1 cut(s) | 3089 |
| BstSCI | CCNGG | 5 cut(s) | 2553, 2767, 3085, 3093, 3118 |
| BstSFI | CTRYAG | 5 cut(s) | 1713, 1959, 2200, 2265, 3143 |
| BstSLI | GKGCMC | 3 cut(s) | 591, 748, 2729 |
| BstV1I | GCAGC | 3 cut(s) | 1132, 1289, 3139 |
| BstV2I | GAAGAC | 3 cut(s) | 794, 1604, 1760 |
| BstX2I | RGATCY | 1 cut(s) | 1007 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 135, 766, 1229 |
| BstYI | RGATCY | 1 cut(s) | 1007 |
| BstZ17I | GTATAC | 1 cut(s) | 1484 |
| Bsu15I | ATCGAT | 3 cut(s) | 852, 897, 3165 |
| Bsu36I | CCTNAGG | 2 cut(s) | 971, 1138 |
| BsuI | GTATCC | 3 cut(s) | 811, 1177, 2551 |
| BsuRI | GGCC | 2 cut(s) | 682, 770 |
| BsuTUI | ATCGAT | 3 cut(s) | 852, 897, 3165 |
| BtsCI | GGATG | 9 cut(s) | 337, 394, 1045, 1059, 1133, 1192, 1468, 2436, 2638 |
| BtsI | GCAGTG | 1 cut(s) | 589 |
| BtsIMutI | CAGTG | 9 cut(s) | 217, 257, 561, 589, 1103, 2262, 2450, 2498, 2665 |
| BveI | ACCTGC | 1 cut(s) | 2527 |
| Cac8I | GCNNGC | 4 cut(s) | 1361, 1394, 2716, 2887 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1145, 2854 |
| Cfr13I | GGNCC | 2 cut(s) | 1540, 3122 |
| ClaI | ATCGAT | 3 cut(s) | 852, 897, 3165 |
| CseI | GACGC | 1 cut(s) | 75 |
| CsiI | ACCWGGT | 1 cut(s) | 3085 |
| Csp6I | GTAC | 4 cut(s) | 1378, 1844, 2339, 3024 |
| CviQI | GTAC | 4 cut(s) | 1378, 1844, 2339, 3024 |
| DraI | TTTAAA | 1 cut(s) | 237 |
| DraIII | CACNNNGTG | 3 cut(s) | 604, 1202, 2504 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 2137, 2164 |
| DriI | GACNNNNNGTC | 1 cut(s) | 285 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 2137, 2164 |
| EaeI | YGGCCR | 1 cut(s) | 768 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 285 |
| Ecl136II | GAGCTC | 1 cut(s) | 2260 |
| Eco130I | CCWWGG | 2 cut(s) | 1397, 1680 |
| Eco147I | AGGCCT | 1 cut(s) | 682 |
| Eco24I | GRGCYC | 1 cut(s) | 2262 |
| Eco31I | GGTCTC | 1 cut(s) | 1960 |
| Eco32I | GATATC | 2 cut(s) | 740, 895 |
| Eco47I | GGWCC | 2 cut(s) | 1540, 3122 |
| Eco53kI | GAGCTC | 1 cut(s) | 2260 |
| Eco57I | CTGAAG | 7 cut(s) | 129, 675, 843, 1263, 2025, 2369, 2450 |
| Eco81I | CCTNAGG | 2 cut(s) | 971, 1138 |
| Eco88I | CYCGRG | 1 cut(s) | 2806 |
| Eco91I | GGTNACC | 1 cut(s) | 3089 |
| EcoICRI | GAGCTC | 1 cut(s) | 2260 |
| EcoO65I | GGTNACC | 1 cut(s) | 3089 |
| EcoRI | GAATTC | 2 cut(s) | 1634, 3148 |
| EcoRII | CCWGG | 5 cut(s) | 2553, 2767, 3085, 3093, 3118 |
| EcoRV | GATATC | 2 cut(s) | 740, 895 |
| EcoT14I | CCWWGG | 2 cut(s) | 1397, 1680 |
| EcoT22I | ATGCAT | 1 cut(s) | 188 |
| EcoT38I | GRGCYC | 1 cut(s) | 2262 |
| ErhI | CCWWGG | 2 cut(s) | 1397, 1680 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2200, 2232 |
| FaqI | GGGAC | 4 cut(s) | 1553, 2125, 2842, 2861 |
| FauI | CCCGC | 2 cut(s) | 991, 2929 |
| FauNDI | CATATG | 1 cut(s) | 1738 |
| FblI | GTMKAC | 4 cut(s) | 64, 1483, 1644, 1962 |
| Fnu4HI | GCNGC | 4 cut(s) | 225, 1146, 1303, 3128 |
| FokI | GGATG | 9 cut(s) | 344, 401, 1052, 1066, 1120, 1179, 1475, 2443, 2625 |
| FriOI | GRGCYC | 1 cut(s) | 2262 |
| Fsp4HI | GCNGC | 4 cut(s) | 225, 1146, 1303, 3128 |
| GluI | GCNGC | 4 cut(s) | 225, 1146, 1303, 3128 |
| GsaI | CCCAGC | 2 cut(s) | 2286, 2652 |
| GsuI | CTGGAG | 1 cut(s) | 648 |
| HaeIII | GGCC | 2 cut(s) | 682, 770 |
| HapII | CCGG | 2 cut(s) | 1005, 2412 |
| HgaI | GACGC | 1 cut(s) | 75 |
| Hin1I | GRCGYC | 1 cut(s) | 2132 |
| HincII | GTYRAC | 4 cut(s) | 65, 290, 733, 2361 |
| HindII | GTYRAC | 4 cut(s) | 65, 290, 733, 2361 |
| HindIII | AAGCTT | 4 cut(s) | 13, 530, 1868, 2543 |
| HpaI | GTTAAC | 1 cut(s) | 733 |
| HpaII | CCGG | 2 cut(s) | 1005, 2412 |
| HphI | GGTGA | 8 cut(s) | 117, 389, 734, 923, 2446, 2516, 2551, 2633 |
| Hpy188III | TCNNGA | 8 cut(s) | 577, 617, 627, 782, 1745, 2491, 2808, 2919 |
| Hpy99I | CGWCG | 1 cut(s) | 69 |
| HpyCH4IV | ACGT | 3 cut(s) | 1545, 2132, 2405 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 66, 221, 538, 1715, 2257, 2542, 2724 |
| HpySE526I | ACGT | 3 cut(s) | 1545, 2132, 2405 |
| Hsp92I | GRCGYC | 1 cut(s) | 2132 |
| KspAI | GTTAAC | 1 cut(s) | 733 |
| LguI | GCTCTTC | 4 cut(s) | 480, 542, 1790, 2502 |
| LmnI | GCTCC | 3 cut(s) | 1714, 2035, 3121 |
| Lsp1109I | GCAGC | 3 cut(s) | 1132, 1289, 3139 |
| LweI | GCATC | 6 cut(s) | 78, 1044, 2557, 2647, 2701, 2898 |
| MabI | ACCWGGT | 1 cut(s) | 3085 |
| MaeII | ACGT | 3 cut(s) | 1545, 2132, 2405 |
| MaeIII | GTNAC | 7 cut(s) | 123, 929, 1341, 1660, 2384, 2758, 3089 |
| MbiI | CCGCTC | 1 cut(s) | 1777 |
| MflI | RGATCY | 1 cut(s) | 1007 |
| MhlI | GDGCHC | 8 cut(s) | 591, 748, 1580, 2032, 2262, 2674, 2729, 3079 |
| MlsI | TGGCCA | 1 cut(s) | 770 |
| MluNI | TGGCCA | 1 cut(s) | 770 |
| MlyI | GAGTC | 5 cut(s) | 86, 2147, 2537, 2697, 2883 |
| MmeI | TCCRAC | 2 cut(s) | 503, 3140 |
| Mox20I | TGGCCA | 1 cut(s) | 770 |
| Mph1103I | ATGCAT | 1 cut(s) | 188 |
| MroXI | GAANNNNTTC | 4 cut(s) | 1675, 1996, 2215, 2446 |
| MscI | TGGCCA | 1 cut(s) | 770 |
| MseI | TTAA | 7 cut(s) | 48, 236, 260, 732, 1722, 1881, 2318 |
| MslI | CAYNNNNRTG | 1 cut(s) | 2679 |
| Msp20I | TGGCCA | 1 cut(s) | 770 |
| MspA1I | CMGCKG | 4 cut(s) | 425, 2162, 3130, 3155 |
| MspI | CCGG | 2 cut(s) | 1005, 2412 |
| MspR9I | CCNGG | 5 cut(s) | 2555, 2769, 3087, 3095, 3120 |
| Mva1269I | GAATGC | 1 cut(s) | 77 |
| MvaI | CCWGG | 5 cut(s) | 2555, 2769, 3087, 3095, 3120 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 66, 221, 538, 1715, 2257, 2542, 2724 |
| NdeI | CATATG | 1 cut(s) | 1738 |
| NlaIV | GGNNCC | 7 cut(s) | 276, 421, 968, 1003, 1123, 1541, 2552 |
| NmeAIII | GCCGAG | 1 cut(s) | 567 |
| NmuCI | GTSAC | 3 cut(s) | 123, 929, 1660 |
| NsiI | ATGCAT | 1 cut(s) | 188 |
| NspI | RCATGY | 4 cut(s) | 186, 455, 712, 1363 |
| PaeI | GCATGC | 1 cut(s) | 1363 |
| PaqCI | CACCTGC | 1 cut(s) | 2527 |
| PceI | AGGCCT | 1 cut(s) | 682 |
| PciSI | GCTCTTC | 4 cut(s) | 480, 542, 1790, 2502 |
| PctI | GAATGC | 1 cut(s) | 77 |
| PdmI | GAANNNNTTC | 4 cut(s) | 1675, 1996, 2215, 2446 |
| PfeI | GAWTC | 8 cut(s) | 643, 755, 874, 1274, 1802, 1817, 2195, 2312 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1178 |
| PkrI | GCNGC | 4 cut(s) | 226, 1147, 1304, 3129 |
| PleI | GAGTC | 5 cut(s) | 86, 2146, 2536, 2696, 2882 |
| PpsI | GAGTC | 5 cut(s) | 86, 2146, 2536, 2696, 2882 |
| Ppu21I | YACGTR | 1 cut(s) | 1546 |
| Psp124BI | GAGCTC | 1 cut(s) | 2262 |
| Psp6I | CCWGG | 5 cut(s) | 2553, 2767, 3085, 3093, 3118 |
| PspEI | GGTNACC | 1 cut(s) | 3089 |
| PspFI | CCCAGC | 2 cut(s) | 2282, 2648 |
| PspGI | CCWGG | 5 cut(s) | 2553, 2767, 3085, 3093, 3118 |
| PspN4I | GGNNCC | 7 cut(s) | 276, 421, 968, 1003, 1123, 1541, 2552 |
| PspPI | GGNCC | 2 cut(s) | 1540, 3122 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 345, 377 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1145, 2854 |
| PsuI | RGATCY | 1 cut(s) | 1007 |
| PvuII | CAGCTG | 3 cut(s) | 2162, 3130, 3155 |
| RsaI | GTAC | 4 cut(s) | 1379, 1845, 2340, 3025 |
| RsaNI | GTAC | 4 cut(s) | 1378, 1844, 2339, 3024 |
| RseI | CAYNNNNRTG | 1 cut(s) | 2679 |
| SacI | GAGCTC | 1 cut(s) | 2262 |
| SalI | GTCGAC | 1 cut(s) | 63 |
| SapI | GCTCTTC | 4 cut(s) | 480, 542, 1790, 2502 |
| SaqAI | TTAA | 7 cut(s) | 48, 236, 260, 732, 1722, 1881, 2318 |
| SatI | GCNGC | 4 cut(s) | 225, 1146, 1303, 3128 |
| Sau96I | GGNCC | 2 cut(s) | 1540, 3122 |
| ScaI | AGTACT | 1 cut(s) | 3025 |
| SchI | GAGTC | 5 cut(s) | 86, 2147, 2537, 2697, 2883 |
| ScrFI | CCNGG | 5 cut(s) | 2555, 2769, 3087, 3095, 3120 |
| SduI | GDGCHC | 8 cut(s) | 591, 748, 1580, 2032, 2262, 2674, 2729, 3079 |
| SexAI | ACCWGGT | 1 cut(s) | 3085 |
| SfaNI | GCATC | 6 cut(s) | 78, 1044, 2557, 2647, 2701, 2898 |
| SfcI | CTRYAG | 5 cut(s) | 1713, 1959, 2200, 2265, 3143 |
| SinI | GGWCC | 2 cut(s) | 1540, 3122 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 2679 |
| SmlI | CTYRAG | 1 cut(s) | 1250 |
| SmoI | CTYRAG | 1 cut(s) | 1250 |
| SpeI | ACTAGT | 1 cut(s) | 1855 |
| SphI | GCATGC | 1 cut(s) | 1363 |
| SseBI | AGGCCT | 1 cut(s) | 682 |
| SsiI | CCGC | 6 cut(s) | 224, 423, 998, 1777, 2936, 3125 |
| SspI | AATATT | 2 cut(s) | 1212, 1675 |
| SstI | GAGCTC | 1 cut(s) | 2262 |
| StuI | AGGCCT | 1 cut(s) | 682 |
| StyD4I | CCNGG | 5 cut(s) | 2553, 2767, 3085, 3093, 3118 |
| StyI | CCWWGG | 2 cut(s) | 1397, 1680 |
| TaiI | ACGT | 3 cut(s) | 1548, 2135, 2408 |
| TatI | WGTACW | 2 cut(s) | 1843, 3023 |
| TauI | GCSGC | 1 cut(s) | 227 |
| TfiI | GAWTC | 8 cut(s) | 643, 755, 874, 1274, 1802, 1817, 2195, 2312 |
| Tru1I | TTAA | 7 cut(s) | 48, 236, 260, 732, 1722, 1881, 2318 |
| Tru9I | TTAA | 7 cut(s) | 48, 236, 260, 732, 1722, 1881, 2318 |
| TscAI | CASTG | 9 cut(s) | 217, 257, 568, 596, 1103, 2269, 2457, 2505, 2672 |
| TseFI | GTSAC | 3 cut(s) | 123, 929, 1660 |
| TseI | GCWGC | 3 cut(s) | 1145, 1302, 3127 |
| Tsp45I | GTSAC | 3 cut(s) | 123, 929, 1660 |
| TspDTI | ATGAA | 8 cut(s) | 338, 339, 348, 809, 866, 971, 1283, 2475 |
| TspGWI | ACGGA | 3 cut(s) | 1662, 2464, 3045 |
| TspRI | CASTG | 9 cut(s) | 217, 257, 568, 596, 1103, 2269, 2457, 2505, 2672 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1178 |
| VneI | GTGCAC | 2 cut(s) | 587, 2725 |
| VpaK11BI | GGWCC | 2 cut(s) | 1540, 3122 |
| XapI | RAATTY | 8 cut(s) | 97, 1060, 1520, 1550, 1634, 2864, 2944, 3148 |
| XceI | RCATGY | 4 cut(s) | 186, 455, 712, 1363 |
| XmiI | GTMKAC | 4 cut(s) | 64, 1483, 1644, 1962 |
| XmnI | GAANNNNTTC | 4 cut(s) | 1675, 1996, 2215, 2446 |
| ZraI | GACGTC | 1 cut(s) | 2133 |
| ZrmI | AGTACT | 1 cut(s) | 3025 |
| Zsp2I | ATGCAT | 1 cut(s) | 188 |