Rroxscaffold_6G00388370

metal ion binding

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Reverse (-)
1233401 .. 1238208
4808 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00388370.1

Sequence Viewer

Length: 180 bp
ATGGCATCTTTTGATAATAAGGCAGAGCGTCTGCCAGTTACGAATTACTATTTCGAAGATAACAAGAATGAACCTATTTCGTTTCATGTTTATAAACTAGAGTCTAATGTACCAACTAAGCAAAGGAGGTGCCTTCGGCCATGGTCATGGAATCTTACAGAATCCCATGGAATCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

59

Amino Acids

7.09

Weight (kDa)

8.89

Isoelectric Point (pI)

64.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000343)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48090 AT5G48090 AT5G48090 AT5G55390 AT5G55390 AT5G55390
fragaria_vesca FvH4_3g23690 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160
malus_domestica MD03G1191000.v1.1 MD11G1207800.v1.1 MD11G1208000.v1.1
prunus_persica Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227600_v2.0.a1 Prupe.4G227700_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1
pyrus_communis pycom01g03400 pycom03g14420 pycom11g18100 pycom11g18140 pycom11g18150 pycom11g18160
rosa_chinensis RchiOBHm_Chr2g0145981 RchiOBHm_Chr4g0405241 RchiOBHm_Chr4g0405271 RchiOBHm_Chr5g0016201 RchiOBHm_Chr5g0041831 RchiOBHm_Chr5g0041871 RchiOBHm_Chr5g0041881 RchiOBHm_Chr5g0059241
rosa_laevigata RLG00000002117 RLG00000008861 RLG00000008862 RLG00000011000 RLG00000033216 RLG00000034097 RLG00000034101
rosa_multiflora Rmu_sc0000161.1_g000001 Rmu_sc0000861.1_g000040 Rmu_sc0007522.1_g000003 Rmu_sc0009443.1_g000015 Rmu_sc0022129.1_g000001 Rmu_sc0042315.1_g000001
rosa_roxburghii Rroxscaffold_1G00038660 Rroxscaffold_1G00038690 Rroxscaffold_5G00349560 Rroxscaffold_5G00349610 Rroxscaffold_6G00388370 Rroxscaffold_7G00188740
rosa_rugosa Rorug03G0199700 Rorug04G0055400 Rorug04G0055500 Rorug04G0055900 Rorug04G0056000 Rorug04G0056100 Rorug04G0056100 Rorug04G0056200 Rorug05G0195600 Rorug05G0195700 Rorug05G0195800 Rorug05G0195900 Rorug05G0196800 Rorug05G0385000
rosa_samantha Rh4AG129900 Rh4AG130100 Rh4BG124200 Rh4BG124400 Rh4BG124500 Rh4CG137200 Rh4CG137300 Rh4DG123500 Rh4DG123700 Rh5AG280800 Rh5AG281400 Rh5BG286700 Rh5BG287000 Rh5BG397800 Rh5CG318100 Rh5CG318600 Rh5CG421600 Rh5DG132300 Rh5DG132400 Rh5DG295400 Rh5DG295700 Rh7BG475300
rosa_wichuraiana Rw0G001330 Rw0G005730 Rw4G008670 Rw4G010510 Rw4G010540 Rw5G026450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 93
AccB1I GGYRCC 1 cut(s) 129
AcoI YGGCCR 1 cut(s) 137
AfaI GTAC 1 cut(s) 111
AoxI GGCC 1 cut(s) 137
AsuII TTCGAA 1 cut(s) 54
BanI GGYRCC 1 cut(s) 129
BfaI CTAG 1 cut(s) 98
BmiI GGNNCC 1 cut(s) 131
BmsI GCATC 1 cut(s) 14
Bpu14I TTCGAA 1 cut(s) 54
BsaJI CCNNGG 2 cut(s) 140, 166
Bse1I ACTGG 1 cut(s) 35
BseDI CCNNGG 2 cut(s) 140, 166
BseNI ACTGG 1 cut(s) 35
BshFI GGCC 1 cut(s) 139
BshNI GGYRCC 1 cut(s) 129
BsnI GGCC 1 cut(s) 139
Bsp119I TTCGAA 1 cut(s) 54
Bsp19I CCATGG 2 cut(s) 140, 166
BspANI GGCC 1 cut(s) 139
BspLI GGNNCC 1 cut(s) 131
BspT104I TTCGAA 1 cut(s) 54
BspT107I GGYRCC 1 cut(s) 129
BsrI ACTGG 1 cut(s) 35
BssECI CCNNGG 2 cut(s) 140, 166
BssT1I CCWWGG 2 cut(s) 140, 166
BstBI TTCGAA 1 cut(s) 54
BstDEI CTNAG 1 cut(s) 117
BstDSI CCRYGG 2 cut(s) 140, 166
BstXI CCANNNNNNTGG 1 cut(s) 147
BsuRI GGCC 1 cut(s) 139
BtgI CCRYGG 2 cut(s) 140, 166
CseI GACGC 1 cut(s) 17
Csp6I GTAC 1 cut(s) 110
CviAII CATG 4 cut(s) 86, 141, 147, 167
CviJI RGCY 1 cut(s) 139
CviKI_1 RGCY 1 cut(s) 139
CviQI GTAC 1 cut(s) 110
DdeI CTNAG 1 cut(s) 117
EaeI YGGCCR 1 cut(s) 137
Eco130I CCWWGG 2 cut(s) 140, 166
EcoT14I CCWWGG 2 cut(s) 140, 166
ErhI CCWWGG 2 cut(s) 140, 166
FaeI CATG 4 cut(s) 89, 144, 150, 170
FaiI YATR 5 cut(s) 87, 93, 142, 148, 168
FatI CATG 4 cut(s) 85, 140, 146, 166
FspBI CTAG 1 cut(s) 98
HaeIII GGCC 1 cut(s) 139
HgaI GACGC 1 cut(s) 17
Hin1II CATG 4 cut(s) 89, 144, 150, 170
HinfI GANTC 4 cut(s) 101, 151, 161, 171
HpyAV CCTTC 1 cut(s) 143
HpyF3I CTNAG 1 cut(s) 117
Hsp92II CATG 4 cut(s) 89, 144, 150, 170
LpnPI CCDG 1 cut(s) 48
LweI GCATC 1 cut(s) 14
MaeI CTAG 1 cut(s) 98
MaeIII GTNAC 1 cut(s) 37
MboII GAAGA 1 cut(s) 68
MluCI AATT 1 cut(s) 43
MlyI GAGTC 1 cut(s) 110
MnlI CCTC 1 cut(s) 120
MslI CAYNNNNRTG 1 cut(s) 145
NcoI CCATGG 2 cut(s) 140, 166
NlaIII CATG 4 cut(s) 89, 144, 150, 170
NlaIV GGNNCC 1 cut(s) 131
NspV TTCGAA 1 cut(s) 54
PfeI GAWTC 3 cut(s) 151, 161, 171
PleI GAGTC 1 cut(s) 109
PpsI GAGTC 1 cut(s) 109
PsiI TTATAA 1 cut(s) 93
PspN4I GGNNCC 1 cut(s) 131
RsaI GTAC 1 cut(s) 111
RsaNI GTAC 1 cut(s) 110
RseI CAYNNNNRTG 1 cut(s) 145
SchI GAGTC 1 cut(s) 110
SetI ASST 2 cut(s) 76, 131
SfaNI GCATC 1 cut(s) 14
SfuI TTCGAA 1 cut(s) 54
SgeI CNNG 6 cut(s) 47, 76, 98, 110, 153, 159
SmiMI CAYNNNNRTG 1 cut(s) 145
Sse9I AATT 1 cut(s) 43
SspMI CTAG 1 cut(s) 98
StyI CCWWGG 2 cut(s) 140, 166
TaqI TCGA 1 cut(s) 54
TasI AATT 1 cut(s) 43
TfiI GAWTC 3 cut(s) 151, 161, 171
TspDTI ATGAA 2 cut(s) 74, 84
XspI CTAG 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.