Rh5AG281400

metal ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000343
Physical Location & Seq
Reverse (-)
38160825 .. 38165063
4239 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG281400.1

Sequence Viewer

Length: 1587 bp
ATGACGTCTTTTGATAATGAGGCAGAGCCTCTGCCTGTGACAAATTATTATTTCGAAGATGACAAGAATGAACCTATCTCGTTTCATGTTTTGCCAATTGAATGGGGTAAGGATAAGAGACAGAATGGGAAGAAAGAACTCATATATTTGCGCGGCATTGCCGATAATGGGCTTCAGACCATACATAGAGCTGTTATAGCATGGAAATTTGACCTTTTTAGTGTGAAGCCGGTGATATCGGTGCTTTCCAAGCAAAACAAGTGGATTGTGCTCCAGAGGCCGAGGAAGAGTTTTGAGAAGATAATAAAGTCAATCTTGGTAACGCTCCACTGTCTTAGTTATGTGATCAGAAATCCGGAGACTTCTGTCAAATCAGTGTGGGAGTACTTAGCTAATGTTTTCAGTTTGTATGAGGCCAGGCCTTCCCAGAATGATCTCGTGGAACATATGCCTTTAATTAGGGAAGCTGTTAAATGGGAGGAGGCTTTGGCAAAGTCCAAGTTTATAGTCAACTTTCTTGAAGAGAGGCCCACAAAGAGGAAACTATCTGATGAGGATATCCAAGTTAGAAAAAAGCCAGGATTGTCCACTGATGACATATTCGATACGGTTTGTGCTTTTTGTGATAATGGTGGCAGCCTTTTGTGTTGTGAAGGGCGATGCCTAAGGTCCTTTCATGCAACTGTAAAGGACGGTGAGGACTTTACTTGTGAATCTCTTGGATTTTCCCAGGATGAAGTAGATGCAATTCGAAAAATTGATTTCTACTGCAAGAACTGTCAATATAAACAGCATCAGTGCTATGCTTGTGGGAAGTTAGGATCCTCGGACAAATCTTTAGGTGCTGAGGTCTTCCCCTGCACTTCTGCAAGGTGTGGTCAGTTTTATCATCCTCATTGTATTGCAAAATTAAGATATCATGAGACCGGAGTTTCTGCAGAAGAACTTGAGAAAAGAATTATGCTGGGGGAATCTTTTACATGTCCAATTCACAAGTGCTGGTTTTGTAAGCAAGGAGAGAATAAGAAGGATCCTGAATTGCAGTTTGCTGTGTGTAGGCGTTGTCCTACATCCTACCACCGTAAATGCTTGCCACGGGACATTCGTTTTGCAAAAGGCAAGGAAGGTGATGAGGAAGACATGGATACAAGAGCTTGGGAAGGTCTATTACCTGACCGTGTGCTAATATATTGCATAAAACATAGAATAGTTAAAGCCTTTGGAACTCCAAGAAGGGACCATGTTAAATTTCCTGATGTCGATGACAATAAAATTTCTGCTGAGAAAAAGACTTTCTGTCAAGAGAAGAAGAGAAGATTAACATCAGAGTCCCTTGTAGTCAGTGAGAATTGTGTGTCAATGAGAAAAAGGCTTTCCTCAGAAGGGTTGCATAAAGAAAAAAATGCTCCTACAACACATAGGCAGAAAATGACTTTAGCTGCAAAAGCTGGGACGCACAGTAAACTCAAGTCTGCGATAGTCAAACCTTCCTCAAGAAAATCGAGCAGTCCCTCATCTTCCTTGGATTCGGCTAGAGTACTGAGATGCTCTAATGAAACATGCTTCCGCTTCAATAACGCTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006950 GO:0006952 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009791 GO:0009889 GO:0009893 GO:0009909 GO:0009911 GO:0009987 GO:0010228 GO:0010468 GO:0010556 GO:0010604 GO:0010638 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030154 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031326 GO:0031399 GO:0031401 GO:0031440 GO:0031935 GO:0031937 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0033043 GO:0033044 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043954 GO:0044030 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048468 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050684 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051052 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051276 GO:0051570 GO:0051574 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060968 GO:0061085 GO:0061087 GO:0061458 GO:0065007 GO:0070827 GO:0070828 GO:0070829 GO:0071840 GO:0080090 GO:0090436 GO:0097159 GO:0098542 GO:0099402 GO:0140110 GO:1900109 GO:1900111 GO:1900363 GO:1901363 GO:1902275 GO:1903311 GO:1903506 GO:1905269 GO:2000024 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNMT1-RFD

Protein Analysis

528

Amino Acids

60.5

Weight (kDa)

8.95

Isoelectric Point (pI)

41.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DNMT1-RFD PF12047 13 - 134 4.3e-08 Cytosine specific DNA methyltransferase replication foci domain
PHD_NSD PF22908 263 - 331 4.5e-19 Histone-lysine N-methyltransferase NSD-like, PHD zinc finger
PHDvar_NSD PF23004 333 - 374 9.9e-07 Histone-lysine N-methyltransferase NSD-like, variant PHD zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000343)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48090 AT5G48090 AT5G48090 AT5G55390 AT5G55390 AT5G55390
fragaria_vesca FvH4_3g23690 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160
malus_domestica MD03G1191000.v1.1 MD11G1207800.v1.1 MD11G1208000.v1.1
prunus_persica Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227600_v2.0.a1 Prupe.4G227700_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1
pyrus_communis pycom01g03400 pycom03g14420 pycom11g18100 pycom11g18140 pycom11g18150 pycom11g18160
rosa_chinensis RchiOBHm_Chr2g0145981 RchiOBHm_Chr4g0405241 RchiOBHm_Chr4g0405271 RchiOBHm_Chr5g0016201 RchiOBHm_Chr5g0041831 RchiOBHm_Chr5g0041871 RchiOBHm_Chr5g0041881 RchiOBHm_Chr5g0059241
rosa_laevigata RLG00000002117 RLG00000008861 RLG00000008862 RLG00000011000 RLG00000033216 RLG00000034097 RLG00000034101
rosa_multiflora Rmu_sc0000161.1_g000001 Rmu_sc0000861.1_g000040 Rmu_sc0007522.1_g000003 Rmu_sc0009443.1_g000015 Rmu_sc0022129.1_g000001 Rmu_sc0042315.1_g000001
rosa_roxburghii Rroxscaffold_1G00038660 Rroxscaffold_1G00038690 Rroxscaffold_5G00349560 Rroxscaffold_5G00349610 Rroxscaffold_6G00388370 Rroxscaffold_7G00188740
rosa_rugosa Rorug03G0199700 Rorug04G0055400 Rorug04G0055500 Rorug04G0055900 Rorug04G0056000 Rorug04G0056100 Rorug04G0056100 Rorug04G0056200 Rorug05G0195600 Rorug05G0195700 Rorug05G0195800 Rorug05G0195900 Rorug05G0196800 Rorug05G0385000
rosa_samantha Rh4AG129900 Rh4AG130100 Rh4BG124200 Rh4BG124400 Rh4BG124500 Rh4CG137200 Rh4CG137300 Rh4DG123500 Rh4DG123700 Rh5AG280800 Rh5AG281400 Rh5BG286700 Rh5BG287000 Rh5BG397800 Rh5CG318100 Rh5CG318600 Rh5CG421600 Rh5DG132300 Rh5DG132400 Rh5DG295400 Rh5DG295700 Rh7BG475300
rosa_wichuraiana Rw0G001330 Rw0G005730 Rw4G008670 Rw4G010510 Rw4G010540 Rw5G026450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 8
AccII CGCG 1 cut(s) 153
AccIII TCCGGA 1 cut(s) 355
AciI CCGC 2 cut(s) 153, 1567
AclWI GGATC 4 cut(s) 816, 829, 1025, 1038
AcsI RAATTY 3 cut(s) 206, 1247, 1272
AcuI CTGAAG 1 cut(s) 158
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 2 cut(s) 386, 1539
AfiI CCNNNNNNNGG 3 cut(s) 168, 537, 1383
AflIII ACRYGT 1 cut(s) 980
AgsI TTSAA 3 cut(s) 101, 521, 1573
AhdI GACNNNNNGTC 1 cut(s) 1296
AjnI CCWGG 3 cut(s) 416, 577, 729
AluBI AGCT 6 cut(s) 191, 392, 467, 1154, 1439, 1448
AluI AGCT 6 cut(s) 191, 392, 467, 1154, 1439, 1448
Alw21I GWGCWC 1 cut(s) 273
Alw26I GTCTC 3 cut(s) 112, 353, 917
AlwI GGATC 4 cut(s) 816, 829, 1025, 1038
Aor13HI TCCGGA 1 cut(s) 355
AoxI GGCC 4 cut(s) 278, 414, 419, 527
ApeKI GCWGC 2 cut(s) 636, 1439
ApoI RAATTY 3 cut(s) 206, 1247, 1272
ArsI GACNNNNNNTTYG 2 cut(s) 1091, 1123
AspLEI GCGC 1 cut(s) 153
AspS9I GGNCC 3 cut(s) 528, 669, 1237
AsuHPI GGTGA 3 cut(s) 244, 707, 1139
AsuII TTCGAA 2 cut(s) 54, 751
AvaII GGWCC 2 cut(s) 669, 1237
AxyI CCTNAGG 1 cut(s) 665
BamHI GGATCC 2 cut(s) 821, 1030
BarI GAAGNNNNNNTAC 2 cut(s) 1152, 1184
BauI CACGAG 1 cut(s) 437
BbsI GAAGAC 2 cut(s) 844, 1143
Bbv12I GWGCWC 1 cut(s) 273
BbvCI CCTCAGC 1 cut(s) 846
BbvI GCAGC 2 cut(s) 648, 1426
BciT130I CCWGG 3 cut(s) 418, 579, 731
BciVI GTATCC 1 cut(s) 1138
BclI TGATCA 1 cut(s) 345
BcoDI GTCTC 3 cut(s) 112, 353, 917
BfaI CTAG 1 cut(s) 1533
BfmI CTRYAG 1 cut(s) 936
BfuI GTATCC 1 cut(s) 1138
BisI GCNGC 3 cut(s) 154, 637, 1440
BlsI GCNGC 3 cut(s) 155, 638, 1441
BmcAI AGTACT 2 cut(s) 386, 1539
Bme1390I CCNGG 3 cut(s) 418, 579, 731
Bme18I GGWCC 2 cut(s) 669, 1237
BmeRI GACNNNNNGTC 1 cut(s) 1296
BmgT120I GGNCC 3 cut(s) 528, 669, 1237
BmiI GGNNCC 3 cut(s) 823, 1032, 1238
BmrFI CCNGG 3 cut(s) 418, 579, 731
BmsI GCATC 4 cut(s) 650, 733, 802, 1535
BoxI GACNNNNGTC 1 cut(s) 365
BpiI GAAGAC 2 cut(s) 844, 1143
BpmI CTGGAG 1 cut(s) 257
Bpu10I CCTNAGC 1 cut(s) 846
Bpu14I TTCGAA 2 cut(s) 54, 751
BpuEI CTTGAG 3 cut(s) 968, 1451, 1477
BsaBI GATNNNNATC 1 cut(s) 1321
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 917
BsaJI CCNNGG 5 cut(s) 281, 729, 825, 1094, 1521
BsaWI WCCGGW 2 cut(s) 355, 926
Bsc4I CCNNNNNNNGG 3 cut(s) 168, 537, 1383
Bse118I RCCGGY 1 cut(s) 229
Bse21I CCTNAGG 1 cut(s) 665
Bse3DI GCAATG 1 cut(s) 156
Bse8I GATNNNNATC 1 cut(s) 1321
BseAI TCCGGA 1 cut(s) 355
BseBI CCWGG 3 cut(s) 418, 579, 731
BseDI CCNNGG 5 cut(s) 281, 729, 825, 1094, 1521
BseGI GGATG 3 cut(s) 739, 889, 1070
BseJI GATNNNNATC 1 cut(s) 1321
BseLI CCNNNNNNNGG 3 cut(s) 168, 537, 1383
BseMI GCAATG 1 cut(s) 156
BseMII CTCAG 4 cut(s) 837, 1272, 1392, 1532
BseRI GAGGAG 1 cut(s) 494
BseXI GCAGC 2 cut(s) 648, 1426
BseYI CCCAGC 2 cut(s) 964, 1448
BsgI GTGCAG 1 cut(s) 844
Bsh1236I CGCG 1 cut(s) 153
BshFI GGCC 4 cut(s) 280, 416, 421, 529
BsiHKAI GWGCWC 1 cut(s) 273
BsiSI CCGG 3 cut(s) 230, 356, 927
BslFI GGGAC 5 cut(s) 1112, 1250, 1315, 1465, 1494
BslI CCNNNNNNNGG 3 cut(s) 168, 537, 1383
BsmAI GTCTC 3 cut(s) 112, 353, 917
BsmFI GGGAC 5 cut(s) 1112, 1250, 1315, 1465, 1494
BsnI GGCC 4 cut(s) 280, 416, 421, 529
Bso31I GGTCTC 1 cut(s) 917
Bsp119I TTCGAA 2 cut(s) 54, 751
Bsp1286I GDGCHC 1 cut(s) 273
Bsp13I TCCGGA 1 cut(s) 355
Bsp143I GATC 4 cut(s) 345, 433, 821, 1030
BspACI CCGC 2 cut(s) 153, 1567
BspANI GGCC 4 cut(s) 280, 416, 421, 529
BspCNI CTCAG 4 cut(s) 838, 1273, 1391, 1533
BspEI TCCGGA 1 cut(s) 355
BspFNI CGCG 1 cut(s) 153
BspHI TCATGA 1 cut(s) 919
BspLI GGNNCC 3 cut(s) 823, 1032, 1238
BspMAI CTGCAG 1 cut(s) 940
BspPI GGATC 4 cut(s) 816, 829, 1025, 1038
BspT104I TTCGAA 2 cut(s) 54, 751
BspTNI GGTCTC 1 cut(s) 917
BsrDI GCAATG 1 cut(s) 156
BsrFI RCCGGY 1 cut(s) 229
BssAI RCCGGY 1 cut(s) 229
BssECI CCNNGG 5 cut(s) 281, 729, 825, 1094, 1521
BssMI GATC 4 cut(s) 345, 433, 821, 1030
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 437
BssT1I CCWWGG 1 cut(s) 1521
Bst2BI CACGAG 1 cut(s) 437
Bst2UI CCWGG 3 cut(s) 418, 579, 731
Bst4CI ACNGT 8 cut(s) 332, 610, 685, 695, 779, 1082, 1178, 1460
Bst6I CTCTTC 3 cut(s) 281, 516, 1304
BstACI GRCGYC 1 cut(s) 5
BstBI TTCGAA 2 cut(s) 54, 751
BstC8I GCNNGC 1 cut(s) 1091
BstDEI CTNAG 7 cut(s) 335, 388, 665, 846, 1281, 1378, 1541
BstDSI CCRYGG 1 cut(s) 1094
BstF5I GGATG 3 cut(s) 739, 889, 1070
BstFNI CGCG 1 cut(s) 153
BstHHI GCGC 1 cut(s) 153
BstKTI GATC 4 cut(s) 348, 436, 824, 1033
BstMAI GTCTC 3 cut(s) 112, 353, 917
BstMBI GATC 4 cut(s) 345, 433, 821, 1030
BstMWI GCNNNNNNNGC 4 cut(s) 197, 250, 277, 1445
BstNI CCWGG 3 cut(s) 418, 579, 731
BstNSI RCATGY 2 cut(s) 984, 1563
BstPAI GACNNNNGTC 1 cut(s) 365
BstSCI CCNGG 3 cut(s) 416, 577, 729
BstSFI CTRYAG 1 cut(s) 936
BstUI CGCG 1 cut(s) 153
BstV1I GCAGC 2 cut(s) 648, 1426
BstV2I GAAGAC 2 cut(s) 844, 1143
BstX2I RGATCY 2 cut(s) 821, 1030
BstXI CCANNNNNNTGG 1 cut(s) 102
BstYI RGATCY 2 cut(s) 821, 1030
Bsu36I CCTNAGG 1 cut(s) 665
BsuI GTATCC 1 cut(s) 1138
BsuRI GGCC 4 cut(s) 280, 416, 421, 529
BtgI CCRYGG 1 cut(s) 1094
BtgZI GCGATG 1 cut(s) 673
BtsCI GGATG 3 cut(s) 739, 889, 1070
BtsIMutI CAGTG 5 cut(s) 328, 381, 588, 803, 1348
Cac8I GCNNGC 1 cut(s) 1091
CciI TCATGA 1 cut(s) 919
CfoI GCGC 1 cut(s) 153
Cfr10I RCCGGY 1 cut(s) 229
Cfr13I GGNCC 3 cut(s) 528, 669, 1237
CseI GACGC 1 cut(s) 1462
Csp6I GTAC 2 cut(s) 385, 1538
CspCI CAANNNNNGTGG 2 cut(s) 242, 277
CviAII CATG 8 cut(s) 86, 201, 677, 920, 981, 1141, 1241, 1560
CviQI GTAC 2 cut(s) 385, 1538
DdeI CTNAG 7 cut(s) 335, 388, 665, 846, 1281, 1378, 1541
DpnI GATC 4 cut(s) 347, 435, 823, 1032
DpnII GATC 4 cut(s) 345, 433, 821, 1030
DriI GACNNNNNGTC 1 cut(s) 1296
Eam1104I CTCTTC 3 cut(s) 281, 516, 1304
Eam1105I GACNNNNNGTC 1 cut(s) 1296
EarI CTCTTC 3 cut(s) 281, 516, 1304
Eco130I CCWWGG 1 cut(s) 1521
Eco147I AGGCCT 1 cut(s) 421
Eco31I GGTCTC 1 cut(s) 917
Eco32I GATATC 3 cut(s) 237, 559, 917
Eco47I GGWCC 2 cut(s) 669, 1237
Eco57I CTGAAG 1 cut(s) 158
Eco81I CCTNAGG 1 cut(s) 665
EcoO109I RGGNCCY 1 cut(s) 669
EcoRII CCWGG 3 cut(s) 416, 577, 729
EcoRV GATATC 3 cut(s) 237, 559, 917
EcoT14I CCWWGG 1 cut(s) 1521
ErhI CCWWGG 1 cut(s) 1521
FaeI CATG 8 cut(s) 89, 204, 680, 923, 984, 1144, 1244, 1563
FalI AAGNNNNNCTT 2 cut(s) 299, 331
FaqI GGGAC 5 cut(s) 1112, 1250, 1315, 1465, 1494
FatI CATG 8 cut(s) 85, 200, 676, 919, 980, 1140, 1240, 1559
FauNDI CATATG 1 cut(s) 447
FbaI TGATCA 1 cut(s) 345
Fnu4HI GCNGC 3 cut(s) 154, 637, 1440
FokI GGATG 3 cut(s) 746, 876, 1057
Fsp4HI GCNGC 3 cut(s) 154, 637, 1440
FspBI CTAG 1 cut(s) 1533
GlaI GCGC 1 cut(s) 152
GluI GCNGC 3 cut(s) 154, 637, 1440
GsaI CCCAGC 2 cut(s) 968, 1452
GsuI CTGGAG 1 cut(s) 257
HaeIII GGCC 4 cut(s) 280, 416, 421, 529
HapII CCGG 3 cut(s) 230, 356, 927
HgaI GACGC 1 cut(s) 1462
HhaI GCGC 1 cut(s) 153
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 8 cut(s) 89, 204, 680, 923, 984, 1144, 1244, 1563
Hin6I GCGC 1 cut(s) 151
HinP1I GCGC 1 cut(s) 151
HincII GTYRAC 1 cut(s) 511
HindII GTYRAC 1 cut(s) 511
HinfI GANTC 4 cut(s) 713, 971, 1328, 1526
HpaII CCGG 3 cut(s) 230, 356, 927
HphI GGTGA 3 cut(s) 244, 707, 1139
Hpy166II GTNNAC 3 cut(s) 511, 588, 1463
Hpy188I TCNGA 6 cut(s) 177, 350, 550, 829, 1327, 1381
Hpy188III TCNNGA 8 cut(s) 274, 356, 518, 920, 1034, 1253, 1301, 1494
Hpy8I GTNNAC 3 cut(s) 511, 588, 1463
HpyAV CCTTC 8 cut(s) 432, 647, 1021, 1118, 1154, 1227, 1376, 1497
HpyCH4III ACNGT 8 cut(s) 332, 610, 685, 695, 779, 1082, 1178, 1460
HpyCH4IV ACGT 1 cut(s) 5
HpyF10VI GCNNNNNNNGC 4 cut(s) 197, 250, 277, 1445
HpyF3I CTNAG 7 cut(s) 335, 388, 665, 846, 1281, 1378, 1541
HpySE526I ACGT 1 cut(s) 5
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 8 cut(s) 89, 204, 680, 923, 984, 1144, 1244, 1563
HspAI GCGC 1 cut(s) 151
Kpn2I TCCGGA 1 cut(s) 355
Ksp22I TGATCA 1 cut(s) 345
Kzo9I GATC 4 cut(s) 345, 433, 821, 1030
LmnI GCTCC 3 cut(s) 276, 330, 1411
Lsp1109I GCAGC 2 cut(s) 648, 1426
LweI GCATC 4 cut(s) 650, 733, 802, 1535
MaeI CTAG 1 cut(s) 1533
MaeII ACGT 1 cut(s) 5
MaeIII GTNAC 2 cut(s) 37, 319
MalI GATC 4 cut(s) 347, 435, 823, 1032
MboI GATC 4 cut(s) 345, 433, 821, 1030
MfeI CAATTG 1 cut(s) 96
MflI RGATCY 2 cut(s) 821, 1030
MhlI GDGCHC 1 cut(s) 273
MlyI GAGTC 1 cut(s) 1337
MroI TCCGGA 1 cut(s) 355
MseI TTAA 6 cut(s) 455, 471, 911, 1212, 1245, 1319
MspI CCGG 3 cut(s) 230, 356, 927
MspR9I CCNGG 3 cut(s) 418, 579, 731
MunI CAATTG 1 cut(s) 96
MvaI CCWGG 3 cut(s) 418, 579, 731
MvnI CGCG 1 cut(s) 153
MwoI GCNNNNNNNGC 4 cut(s) 197, 250, 277, 1445
NdeI CATATG 1 cut(s) 447
NdeII GATC 4 cut(s) 345, 433, 821, 1030
NlaIII CATG 8 cut(s) 89, 204, 680, 923, 984, 1144, 1244, 1563
NlaIV GGNNCC 3 cut(s) 823, 1032, 1238
NmeAIII GCCGAG 1 cut(s) 306
NmuCI GTSAC 1 cut(s) 37
NspI RCATGY 2 cut(s) 984, 1563
NspV TTCGAA 2 cut(s) 54, 751
PagI TCATGA 1 cut(s) 919
PceI AGGCCT 1 cut(s) 421
PciI ACATGT 1 cut(s) 980
PcsI WCGNNNNNNNCGW 1 cut(s) 1102
PfeI GAWTC 3 cut(s) 713, 971, 1526
PkrI GCNGC 3 cut(s) 155, 638, 1441
PleI GAGTC 1 cut(s) 1336
PpsI GAGTC 1 cut(s) 1336
PpuMI RGGWCCY 1 cut(s) 669
PscI ACATGT 1 cut(s) 980
PshAI GACNNNNGTC 1 cut(s) 365
Psp5II RGGWCCY 1 cut(s) 669
Psp6I CCWGG 3 cut(s) 416, 577, 729
PspFI CCCAGC 2 cut(s) 964, 1448
PspGI CCWGG 3 cut(s) 416, 577, 729
PspN4I GGNNCC 3 cut(s) 823, 1032, 1238
PspPI GGNCC 3 cut(s) 528, 669, 1237
PspPPI RGGWCCY 1 cut(s) 669
PstI CTGCAG 1 cut(s) 940
PsuI RGATCY 2 cut(s) 821, 1030
RsaI GTAC 2 cut(s) 386, 1539
RsaNI GTAC 2 cut(s) 385, 1538
SaqAI TTAA 6 cut(s) 455, 471, 911, 1212, 1245, 1319
SatI GCNGC 3 cut(s) 154, 637, 1440
Sau3AI GATC 4 cut(s) 345, 433, 821, 1030
Sau96I GGNCC 3 cut(s) 528, 669, 1237
ScaI AGTACT 2 cut(s) 386, 1539
SchI GAGTC 1 cut(s) 1337
ScrFI CCNGG 3 cut(s) 418, 579, 731
SduI GDGCHC 1 cut(s) 273
SfaNI GCATC 4 cut(s) 650, 733, 802, 1535
SfcI CTRYAG 1 cut(s) 936
SfuI TTCGAA 2 cut(s) 54, 751
SinI GGWCC 2 cut(s) 669, 1237
SmlI CTYRAG 3 cut(s) 947, 1466, 1492
SmoI CTYRAG 3 cut(s) 947, 1466, 1492
SseBI AGGCCT 1 cut(s) 421
SsiI CCGC 2 cut(s) 153, 1567
SspMI CTAG 1 cut(s) 1533
StuI AGGCCT 1 cut(s) 421
StyD4I CCNGG 3 cut(s) 416, 577, 729
StyI CCWWGG 1 cut(s) 1521
TaaI ACNGT 8 cut(s) 332, 610, 685, 695, 779, 1082, 1178, 1460
TaiI ACGT 1 cut(s) 8
TaqI TCGA 5 cut(s) 54, 603, 751, 1260, 1502
TatI WGTACW 2 cut(s) 384, 1537
TauI GCSGC 1 cut(s) 156
TfiI GAWTC 3 cut(s) 713, 971, 1526
Tru1I TTAA 6 cut(s) 455, 471, 911, 1212, 1245, 1319
Tru9I TTAA 6 cut(s) 455, 471, 911, 1212, 1245, 1319
TscAI CASTG 5 cut(s) 335, 381, 595, 803, 1348
TseFI GTSAC 1 cut(s) 37
TseI GCWGC 2 cut(s) 636, 1439
Tsp45I GTSAC 1 cut(s) 37
TspDTI ATGAA 5 cut(s) 74, 84, 665, 750, 1569
TspRI CASTG 5 cut(s) 335, 381, 595, 803, 1348
VpaK11BI GGWCC 2 cut(s) 669, 1237
XapI RAATTY 3 cut(s) 206, 1247, 1272
XceI RCATGY 2 cut(s) 984, 1563
XspI CTAG 1 cut(s) 1533
ZraI GACGTC 1 cut(s) 6
ZrmI AGTACT 2 cut(s) 386, 1539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.