RLG00000034101

metal ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000343
Physical Location & Seq
Reverse (-)
36769152 .. 36774496
5345 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034101

Sequence Viewer

Length: 1887 bp
ATGGCATCTTTAGATAATGAGGCAGAGCCTCTGCCCGTGACAAATTATTATTTCGAAGATGACAAGAATGAACCTATCTCGATTCATGTTTTGCCAATTGAATGGGGTAAGGATAAGAGACAGAATAGGAAGAAAGAACTCATATATTTGCGCGGCATTGCCGATAATGGGCTTCAGACCATACATAGAGCTGTTATAGCATGGAAATTTGACCTTTTTAGTGTGAAGCCGGTGATATCGGTGCTCTCCAAGCAAAACAAGTGGATTGTGCTCCAGAGGCCGAGGAAGAGTTTTGAGATGATAATAAGGCCAATCTTGGTAACACTCCACTGCCTTAGTTATGTGATCAGAAATCCGGAGACGTCTGCCAAATCAGTGTGGGAGTACTTAGCTAATGTTTTCAGTTTGTATGAGGCCAGGCCTTCCCAGAATGATCTCGTGGAACATATGCCTTTAATTAGGGAAGCTGTTAAATGGGAGGAGGCTTTGGCAAATTCCAAGTTTATAGTCAACTTTCTTGAAGAGAGGCCCACAAAGAGGAAACTATCTGATGAGGATATCCAAGTTAGAAAAAAACCAGGATTGTCCACTGATGACCTATTTGATACTGTTTGTGCTTTTTGTGATAATGGTGGCAACCTTTTGTGTTGTGAAGGGCGATGCCTAAGGTCCTTTCATGCAACTGTAAAGGACGGTGAGGACTTTACTTGCGAATCTCTTGGATTTACCCAGGATGAAGTAGATGCAATTCGAAAAATTGATTTCTACTGCAAGAACTGTCAATATAAACGGCATCAGTGCTATGCTTGTGGGAAGTTAAGATCCTCGGACAAATCTTTAGGTGCTGAGGTCTTCCCCTGCACTTCTGCAAGGTGCGGTCAGTTTTATCATCCTCATTGTATTGCAAAATTAAGATATCATGAGACCGAATGCTGCTTTTGTAAGCAAGGAGAGAATAAGAAGGATCCTGAATTGCAGTTTGCTGTGTGTAGGCGTTGTCCTACGTCCTACCACCGTAAATGCTTGCCACGGGACATTCGTTTTGCAAAAGGCAAGGAAGGTGATGAGGAAGACACGGATACAAGAGCTTGGGAAGGTCTATTACCTGACCGTGTGCTAATATATTGCACAAAGCATAGAATAGTTAAAGCCTTTGGAACTCCAAGAAGGGACCATGTTAAATTTCCTGATGTTGATGACAATAAAATTTCTGCTGAGAAGAAGACTTTTTGTCAAGAGAAGAAGAGAAGATTAACATCAGAGTCCCTTGTAGTCGGTGAGAATTCTGTGTCAATGAGAGAAAGGCTCTCCTCAGAACGGTTGCATAAAGGAAAAAATGCTCCTACAACACATAGGCAGAAAATGACTTTAGCTGCAAAAGCTGGGAAGCACAGTAAACTCAAGTCTGCAATAGTCAAACCTTCCTCAAGAAAATCGAGCAGTCCCTCATCTTCCTTGGATTCGGCTAGAGTAATGAGATTAGATGCTCTAATGAAACATGCTTCCGCTTCAATAACGCTGGATGATGAAGGTTGCAGTACTAAAGATGCAGAGAGGCTGTTTTTCCACCTGAGACTCTTGATCATATTAATATTTGGAAGCCCTTTTATCTCCCTGGATCTTGATCTATCGGTCTGGATGACCAGCAAATGGACCAATGAAATGAGAGGCCACCTGAACTCTCTTGGGAGATTTGATTGTTTGCCTAAATTCAAGGCCATAGCTCAAGACCAAGTGGTCATCATGGACAATCCCTTGGTTATGATTTTGATGATGGAGAAGTTGCAGCAAAGGGACATAAAGAGAGATCCTCTCAGAGTGGTAACAAAGAGAAGTTATGATCTTAGTCTTATTGGCCACTGGAATAACCAGGTTCATGAGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006950 GO:0006952 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009791 GO:0009889 GO:0009893 GO:0009909 GO:0009911 GO:0009987 GO:0010228 GO:0010468 GO:0010556 GO:0010604 GO:0010638 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030154 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031326 GO:0031399 GO:0031401 GO:0031440 GO:0031935 GO:0031937 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0033043 GO:0033044 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043954 GO:0044030 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048468 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050684 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051052 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051276 GO:0051570 GO:0051574 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060968 GO:0061085 GO:0061087 GO:0061458 GO:0065007 GO:0070827 GO:0070828 GO:0070829 GO:0071840 GO:0080090 GO:0090436 GO:0097159 GO:0098542 GO:0099402 GO:0140110 GO:1900109 GO:1900111 GO:1900363 GO:1901363 GO:1902275 GO:1903311 GO:1903506 GO:1905269 GO:2000024 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNMT1-RFD

Protein Analysis

629

Amino Acids

72.29

Weight (kDa)

8.99

Isoelectric Point (pI)

41.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DNMT1-RFD PF12047 13 - 134 1.9e-06 Cytosine specific DNA methyltransferase replication foci domain
PHD_NSD PF22908 263 - 309 7.3e-14 Histone-lysine N-methyltransferase NSD-like, PHD zinc finger
PHDvar_NSD PF23004 311 - 379 1.5e-06 Histone-lysine N-methyltransferase NSD-like, variant PHD zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000343)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48090 AT5G48090 AT5G48090 AT5G55390 AT5G55390 AT5G55390
fragaria_vesca FvH4_3g23690 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160
malus_domestica MD03G1191000.v1.1 MD11G1207800.v1.1 MD11G1208000.v1.1
prunus_persica Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227600_v2.0.a1 Prupe.4G227700_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1
pyrus_communis pycom01g03400 pycom03g14420 pycom11g18100 pycom11g18140 pycom11g18150 pycom11g18160
rosa_chinensis RchiOBHm_Chr2g0145981 RchiOBHm_Chr4g0405241 RchiOBHm_Chr4g0405271 RchiOBHm_Chr5g0016201 RchiOBHm_Chr5g0041831 RchiOBHm_Chr5g0041871 RchiOBHm_Chr5g0041881 RchiOBHm_Chr5g0059241
rosa_laevigata RLG00000002117 RLG00000008861 RLG00000008862 RLG00000011000 RLG00000033216 RLG00000034097 RLG00000034101
rosa_multiflora Rmu_sc0000161.1_g000001 Rmu_sc0000861.1_g000040 Rmu_sc0007522.1_g000003 Rmu_sc0009443.1_g000015 Rmu_sc0022129.1_g000001 Rmu_sc0042315.1_g000001
rosa_roxburghii Rroxscaffold_1G00038660 Rroxscaffold_1G00038690 Rroxscaffold_5G00349560 Rroxscaffold_5G00349610 Rroxscaffold_6G00388370 Rroxscaffold_7G00188740
rosa_rugosa Rorug03G0199700 Rorug04G0055400 Rorug04G0055500 Rorug04G0055900 Rorug04G0056000 Rorug04G0056100 Rorug04G0056100 Rorug04G0056200 Rorug05G0195600 Rorug05G0195700 Rorug05G0195800 Rorug05G0195900 Rorug05G0196800 Rorug05G0385000
rosa_samantha Rh4AG129900 Rh4AG130100 Rh4BG124200 Rh4BG124400 Rh4BG124500 Rh4CG137200 Rh4CG137300 Rh4DG123500 Rh4DG123700 Rh5AG280800 Rh5AG281400 Rh5BG286700 Rh5BG287000 Rh5BG397800 Rh5CG318100 Rh5CG318600 Rh5CG421600 Rh5DG132300 Rh5DG132400 Rh5DG295400 Rh5DG295700 Rh7BG475300
rosa_wichuraiana Rw0G001330 Rw0G005730 Rw4G008670 Rw4G010510 Rw4G010540 Rw5G026450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1736
AatII GACGTC 1 cut(s) 365
AccB7I CCANNNNNTGG 1 cut(s) 1650
AccII CGCG 1 cut(s) 153
AccIII TCCGGA 1 cut(s) 355
AciI CCGC 3 cut(s) 153, 876, 1506
AclWI GGATC 5 cut(s) 816, 959, 972, 1626, 1802
AcoI YGGCCR 1 cut(s) 1855
AcsI RAATTY 6 cut(s) 206, 493, 1181, 1206, 1282, 1709
AcuI CTGAAG 1 cut(s) 158
AcyI GRCGYC 1 cut(s) 362
AfaI GTAC 2 cut(s) 386, 1540
AfiI CCNNNNNNNGG 4 cut(s) 168, 537, 1317, 1650
AgsI TTSAA 4 cut(s) 101, 521, 1512, 1714
AhdI GACNNNNNGTC 1 cut(s) 1230
AjnI CCWGG 5 cut(s) 416, 577, 729, 1614, 1869
AluBI AGCT 7 cut(s) 191, 392, 467, 1088, 1373, 1382, 1724
AluI AGCT 7 cut(s) 191, 392, 467, 1088, 1373, 1382, 1724
Alw21I GWGCWC 2 cut(s) 246, 273
Alw26I GTCTC 5 cut(s) 112, 353, 917, 1567, 1874
AlwI GGATC 5 cut(s) 816, 959, 972, 1626, 1802
Aor13HI TCCGGA 1 cut(s) 355
AoxI GGCC 8 cut(s) 278, 308, 414, 419, 527, 1669, 1716, 1855
ApeKI GCWGC 3 cut(s) 933, 1373, 1786
ApoI RAATTY 6 cut(s) 206, 493, 1181, 1206, 1282, 1709
ArsI GACNNNNNNTTYG 2 cut(s) 1025, 1057
AseI ATTAAT 1 cut(s) 1589
AspLEI GCGC 1 cut(s) 153
AspS9I GGNCC 4 cut(s) 528, 669, 1171, 1653
AsuHPI GGTGA 4 cut(s) 244, 707, 1073, 1289
AsuII TTCGAA 2 cut(s) 54, 751
AvaII GGWCC 3 cut(s) 669, 1171, 1653
AxyI CCTNAGG 1 cut(s) 665
BalI TGGCCA 1 cut(s) 1857
BamHI GGATCC 1 cut(s) 964
BarI GAAGNNNNNNTAC 2 cut(s) 1086, 1118
BauI CACGAG 1 cut(s) 437
BbsI GAAGAC 3 cut(s) 844, 1077, 1229
Bbv12I GWGCWC 2 cut(s) 246, 273
BbvCI CCTCAGC 1 cut(s) 846
BbvI GCAGC 3 cut(s) 920, 1360, 1798
BccI CCATC 1 cut(s) 1768
BceAI ACGGC 1 cut(s) 806
BciT130I CCWGG 5 cut(s) 418, 579, 731, 1616, 1871
BciVI GTATCC 1 cut(s) 1072
BclI TGATCA 2 cut(s) 345, 1581
BcoDI GTCTC 5 cut(s) 112, 353, 917, 1567, 1874
BfaI CTAG 1 cut(s) 1467
BfuI GTATCC 1 cut(s) 1072
BisI GCNGC 4 cut(s) 154, 934, 1374, 1787
BlsI GCNGC 4 cut(s) 155, 935, 1375, 1788
BmcAI AGTACT 2 cut(s) 386, 1540
Bme1390I CCNGG 5 cut(s) 418, 579, 731, 1616, 1871
Bme18I GGWCC 3 cut(s) 669, 1171, 1653
BmeRI GACNNNNNGTC 1 cut(s) 1230
BmgT120I GGNCC 4 cut(s) 528, 669, 1171, 1653
BmiI GGNNCC 2 cut(s) 966, 1172
BmrFI CCNGG 5 cut(s) 418, 579, 731, 1616, 1871
BmsI GCATC 6 cut(s) 14, 650, 733, 802, 1474, 1537
BpiI GAAGAC 3 cut(s) 844, 1077, 1229
BplI GAGNNNNNCTC 6 cut(s) 1290, 1322, 1795, 1827, 1797, 1829
BpmI CTGGAG 1 cut(s) 257
Bpu10I CCTNAGC 1 cut(s) 846
Bpu14I TTCGAA 2 cut(s) 54, 751
BpuEI CTTGAG 3 cut(s) 1385, 1411, 1710
BsaBI GATNNNNATC 2 cut(s) 1255, 1623
BsaHI GRCGYC 1 cut(s) 362
BsaI GGTCTC 1 cut(s) 917
BsaJI CCNNGG 7 cut(s) 281, 729, 825, 1028, 1455, 1614, 1755
BsaWI WCCGGW 1 cut(s) 355
Bsc4I CCNNNNNNNGG 4 cut(s) 168, 537, 1317, 1650
Bse118I RCCGGY 1 cut(s) 229
Bse1I ACTGG 1 cut(s) 1865
Bse21I CCTNAGG 1 cut(s) 665
Bse3DI GCAATG 1 cut(s) 156
Bse8I GATNNNNATC 2 cut(s) 1255, 1623
BseAI TCCGGA 1 cut(s) 355
BseBI CCWGG 5 cut(s) 418, 579, 731, 1616, 1871
BseDI CCNNGG 7 cut(s) 281, 729, 825, 1028, 1455, 1614, 1755
BseGI GGATG 4 cut(s) 739, 889, 1528, 1644
BseJI GATNNNNATC 2 cut(s) 1255, 1623
BseLI CCNNNNNNNGG 4 cut(s) 168, 537, 1317, 1650
BseMI GCAATG 1 cut(s) 156
BseMII CTCAG 5 cut(s) 837, 1206, 1326, 1562, 1828
BseNI ACTGG 1 cut(s) 1865
BseRI GAGGAG 2 cut(s) 494, 1300
BseXI GCAGC 3 cut(s) 920, 1360, 1798
BseYI CCCAGC 1 cut(s) 1382
BsgI GTGCAG 1 cut(s) 844
Bsh1236I CGCG 1 cut(s) 153
BshFI GGCC 8 cut(s) 280, 310, 416, 421, 529, 1671, 1718, 1857
BsiHKAI GWGCWC 2 cut(s) 246, 273
BsiSI CCGG 2 cut(s) 230, 356
BslFI GGGAC 5 cut(s) 1046, 1184, 1249, 1428, 1808
BslI CCNNNNNNNGG 4 cut(s) 168, 537, 1317, 1650
BsmAI GTCTC 5 cut(s) 112, 353, 917, 1567, 1874
BsmBI CGTCTC 1 cut(s) 353
BsmFI GGGAC 5 cut(s) 1046, 1184, 1249, 1428, 1808
BsmI GAATGC 1 cut(s) 935
BsnI GGCC 8 cut(s) 280, 310, 416, 421, 529, 1671, 1718, 1857
Bso31I GGTCTC 1 cut(s) 917
Bsp119I TTCGAA 2 cut(s) 54, 751
Bsp1286I GDGCHC 2 cut(s) 246, 273
Bsp13I TCCGGA 1 cut(s) 355
Bsp143I GATC 9 cut(s) 345, 433, 821, 964, 1581, 1618, 1624, 1807, 1840
BspACI CCGC 3 cut(s) 153, 876, 1506
BspANI GGCC 8 cut(s) 280, 310, 416, 421, 529, 1671, 1718, 1857
BspCNI CTCAG 5 cut(s) 838, 1207, 1325, 1563, 1827
BspEI TCCGGA 1 cut(s) 355
BspFNI CGCG 1 cut(s) 153
BspHI TCATGA 2 cut(s) 919, 1876
BspLI GGNNCC 2 cut(s) 966, 1172
BspPI GGATC 5 cut(s) 816, 959, 972, 1626, 1802
BspT104I TTCGAA 2 cut(s) 54, 751
BspTNI GGTCTC 1 cut(s) 917
BsrDI GCAATG 1 cut(s) 156
BsrFI RCCGGY 1 cut(s) 229
BsrI ACTGG 1 cut(s) 1865
BssAI RCCGGY 1 cut(s) 229
BssECI CCNNGG 7 cut(s) 281, 729, 825, 1028, 1455, 1614, 1755
BssMI GATC 9 cut(s) 345, 433, 821, 964, 1581, 1618, 1624, 1807, 1840
BssNI GRCGYC 1 cut(s) 362
BssSI CACGAG 1 cut(s) 437
BssT1I CCWWGG 2 cut(s) 1455, 1755
Bst2BI CACGAG 1 cut(s) 437
Bst2UI CCWGG 5 cut(s) 418, 579, 731, 1616, 1871
Bst4CI ACNGT 8 cut(s) 610, 685, 695, 779, 1016, 1112, 1320, 1394
Bst6I CTCTTC 3 cut(s) 281, 516, 1238
BstACI GRCGYC 1 cut(s) 362
BstBI TTCGAA 2 cut(s) 54, 751
BstC8I GCNNGC 1 cut(s) 1025
BstDEI CTNAG 9 cut(s) 335, 388, 665, 846, 1215, 1312, 1571, 1814, 1844
BstDSI CCRYGG 1 cut(s) 1028
BstF5I GGATG 4 cut(s) 739, 889, 1528, 1644
BstFNI CGCG 1 cut(s) 153
BstHHI GCGC 1 cut(s) 153
BstKTI GATC 9 cut(s) 348, 436, 824, 967, 1584, 1621, 1627, 1810, 1843
BstMAI GTCTC 5 cut(s) 112, 353, 917, 1567, 1874
BstMBI GATC 9 cut(s) 345, 433, 821, 964, 1581, 1618, 1624, 1807, 1840
BstMWI GCNNNNNNNGC 4 cut(s) 197, 250, 277, 1379
BstNI CCWGG 5 cut(s) 418, 579, 731, 1616, 1871
BstNSI RCATGY 1 cut(s) 1502
BstSCI CCNGG 5 cut(s) 416, 577, 729, 1614, 1869
BstUI CGCG 1 cut(s) 153
BstV1I GCAGC 3 cut(s) 920, 1360, 1798
BstV2I GAAGAC 3 cut(s) 844, 1077, 1229
BstX2I RGATCY 4 cut(s) 821, 964, 1618, 1807
BstXI CCANNNNNNTGG 1 cut(s) 102
BstYI RGATCY 4 cut(s) 821, 964, 1618, 1807
Bsu36I CCTNAGG 1 cut(s) 665
BsuI GTATCC 1 cut(s) 1072
BsuRI GGCC 8 cut(s) 280, 310, 416, 421, 529, 1671, 1718, 1857
BtgI CCRYGG 1 cut(s) 1028
BtgZI GCGATG 1 cut(s) 673
BtsCI GGATG 4 cut(s) 739, 889, 1528, 1644
BtsI GCAGTG 1 cut(s) 328
BtsIMutI CAGTG 5 cut(s) 328, 381, 588, 803, 1858
Cac8I GCNNGC 1 cut(s) 1025
CciI TCATGA 2 cut(s) 919, 1876
CfoI GCGC 1 cut(s) 153
Cfr10I RCCGGY 1 cut(s) 229
Cfr13I GGNCC 4 cut(s) 528, 669, 1171, 1653
CsiI ACCWGGT 1 cut(s) 1869
Csp6I GTAC 2 cut(s) 385, 1539
CspCI CAANNNNNGTGG 2 cut(s) 242, 277
CviAII CATG 8 cut(s) 86, 201, 677, 920, 1175, 1499, 1744, 1877
CviQI GTAC 2 cut(s) 385, 1539
DdeI CTNAG 9 cut(s) 335, 388, 665, 846, 1215, 1312, 1571, 1814, 1844
DpnI GATC 9 cut(s) 347, 435, 823, 966, 1583, 1620, 1626, 1809, 1842
DpnII GATC 9 cut(s) 345, 433, 821, 964, 1581, 1618, 1624, 1807, 1840
DrdI GACNNNNNNGTC 1 cut(s) 1736
DriI GACNNNNNGTC 1 cut(s) 1230
DseDI GACNNNNNNGTC 1 cut(s) 1736
EaeI YGGCCR 1 cut(s) 1855
Eam1104I CTCTTC 3 cut(s) 281, 516, 1238
Eam1105I GACNNNNNGTC 1 cut(s) 1230
EarI CTCTTC 3 cut(s) 281, 516, 1238
Eco130I CCWWGG 2 cut(s) 1455, 1755
Eco147I AGGCCT 1 cut(s) 421
Eco31I GGTCTC 1 cut(s) 917
Eco32I GATATC 3 cut(s) 237, 559, 917
Eco47I GGWCC 3 cut(s) 669, 1171, 1653
Eco57I CTGAAG 1 cut(s) 158
Eco81I CCTNAGG 1 cut(s) 665
EcoO109I RGGNCCY 1 cut(s) 669
EcoRI GAATTC 1 cut(s) 1282
EcoRII CCWGG 5 cut(s) 416, 577, 729, 1614, 1869
EcoRV GATATC 3 cut(s) 237, 559, 917
EcoT14I CCWWGG 2 cut(s) 1455, 1755
ErhI CCWWGG 2 cut(s) 1455, 1755
Esp3I CGTCTC 1 cut(s) 353
FaeI CATG 8 cut(s) 89, 204, 680, 923, 1178, 1502, 1747, 1880
FaqI GGGAC 5 cut(s) 1046, 1184, 1249, 1428, 1808
FatI CATG 8 cut(s) 85, 200, 676, 919, 1174, 1498, 1743, 1876
FauNDI CATATG 1 cut(s) 447
FbaI TGATCA 2 cut(s) 345, 1581
Fnu4HI GCNGC 4 cut(s) 154, 934, 1374, 1787
FokI GGATG 4 cut(s) 746, 876, 1535, 1651
Fsp4HI GCNGC 4 cut(s) 154, 934, 1374, 1787
FspBI CTAG 1 cut(s) 1467
GlaI GCGC 1 cut(s) 152
GluI GCNGC 4 cut(s) 154, 934, 1374, 1787
GsaI CCCAGC 1 cut(s) 1386
GsuI CTGGAG 1 cut(s) 257
HaeIII GGCC 8 cut(s) 280, 310, 416, 421, 529, 1671, 1718, 1857
HapII CCGG 2 cut(s) 230, 356
HhaI GCGC 1 cut(s) 153
Hin1I GRCGYC 1 cut(s) 362
Hin1II CATG 8 cut(s) 89, 204, 680, 923, 1178, 1502, 1747, 1880
Hin6I GCGC 1 cut(s) 151
HinP1I GCGC 1 cut(s) 151
HincII GTYRAC 1 cut(s) 511
HindII GTYRAC 1 cut(s) 511
HinfI GANTC 5 cut(s) 82, 713, 1262, 1460, 1575
HpaII CCGG 2 cut(s) 230, 356
HphI GGTGA 4 cut(s) 244, 707, 1073, 1289
Hpy166II GTNNAC 3 cut(s) 511, 588, 1397
Hpy188I TCNGA 7 cut(s) 177, 350, 550, 829, 1261, 1315, 1817
Hpy8I GTNNAC 3 cut(s) 511, 588, 1397
HpyAV CCTTC 8 cut(s) 432, 647, 955, 1052, 1088, 1161, 1431, 1523
HpyCH4III ACNGT 8 cut(s) 610, 685, 695, 779, 1016, 1112, 1320, 1394
HpyCH4IV ACGT 2 cut(s) 362, 1004
HpyF10VI GCNNNNNNNGC 4 cut(s) 197, 250, 277, 1379
HpyF3I CTNAG 9 cut(s) 335, 388, 665, 846, 1215, 1312, 1571, 1814, 1844
HpySE526I ACGT 2 cut(s) 362, 1004
Hsp92I GRCGYC 1 cut(s) 362
Hsp92II CATG 8 cut(s) 89, 204, 680, 923, 1178, 1502, 1747, 1880
HspAI GCGC 1 cut(s) 151
Kpn2I TCCGGA 1 cut(s) 355
Ksp22I TGATCA 2 cut(s) 345, 1581
Kzo9I GATC 9 cut(s) 345, 433, 821, 964, 1581, 1618, 1624, 1807, 1840
LmnI GCTCC 2 cut(s) 276, 1345
Lsp1109I GCAGC 3 cut(s) 920, 1360, 1798
LweI GCATC 6 cut(s) 14, 650, 733, 802, 1474, 1537
MabI ACCWGGT 1 cut(s) 1869
MaeI CTAG 1 cut(s) 1467
MaeII ACGT 2 cut(s) 362, 1004
MaeIII GTNAC 3 cut(s) 37, 319, 1822
MalI GATC 9 cut(s) 347, 435, 823, 966, 1583, 1620, 1626, 1809, 1842
MboI GATC 9 cut(s) 345, 433, 821, 964, 1581, 1618, 1624, 1807, 1840
MfeI CAATTG 1 cut(s) 96
MflI RGATCY 4 cut(s) 821, 964, 1618, 1807
MhlI GDGCHC 2 cut(s) 246, 273
MlsI TGGCCA 1 cut(s) 1857
MluNI TGGCCA 1 cut(s) 1857
MlyI GAGTC 2 cut(s) 1271, 1569
Mox20I TGGCCA 1 cut(s) 1857
MroI TCCGGA 1 cut(s) 355
MscI TGGCCA 1 cut(s) 1857
MseI TTAA 8 cut(s) 455, 471, 818, 911, 1146, 1179, 1253, 1589
Msp20I TGGCCA 1 cut(s) 1857
MspI CCGG 2 cut(s) 230, 356
MspR9I CCNGG 5 cut(s) 418, 579, 731, 1616, 1871
MunI CAATTG 1 cut(s) 96
Mva1269I GAATGC 1 cut(s) 935
MvaI CCWGG 5 cut(s) 418, 579, 731, 1616, 1871
MvnI CGCG 1 cut(s) 153
MwoI GCNNNNNNNGC 4 cut(s) 197, 250, 277, 1379
NdeI CATATG 1 cut(s) 447
NdeII GATC 9 cut(s) 345, 433, 821, 964, 1581, 1618, 1624, 1807, 1840
NlaIII CATG 8 cut(s) 89, 204, 680, 923, 1178, 1502, 1747, 1880
NlaIV GGNNCC 2 cut(s) 966, 1172
NmeAIII GCCGAG 1 cut(s) 306
NmuCI GTSAC 1 cut(s) 37
NspI RCATGY 1 cut(s) 1502
NspV TTCGAA 2 cut(s) 54, 751
PagI TCATGA 2 cut(s) 919, 1876
PceI AGGCCT 1 cut(s) 421
PcsI WCGNNNNNNNCGW 1 cut(s) 1036
PctI GAATGC 1 cut(s) 935
PfeI GAWTC 3 cut(s) 82, 713, 1460
PflMI CCANNNNNTGG 1 cut(s) 1650
PkrI GCNGC 4 cut(s) 155, 935, 1375, 1788
PleI GAGTC 2 cut(s) 1270, 1569
PpsI GAGTC 2 cut(s) 1270, 1569
PpuMI RGGWCCY 1 cut(s) 669
PshBI ATTAAT 1 cut(s) 1589
Psp5II RGGWCCY 1 cut(s) 669
Psp6I CCWGG 5 cut(s) 416, 577, 729, 1614, 1869
PspFI CCCAGC 1 cut(s) 1382
PspGI CCWGG 5 cut(s) 416, 577, 729, 1614, 1869
PspN4I GGNNCC 2 cut(s) 966, 1172
PspPI GGNCC 4 cut(s) 528, 669, 1171, 1653
PspPPI RGGWCCY 1 cut(s) 669
PsuI RGATCY 4 cut(s) 821, 964, 1618, 1807
RsaI GTAC 2 cut(s) 386, 1540
RsaNI GTAC 2 cut(s) 385, 1539
SaqAI TTAA 8 cut(s) 455, 471, 818, 911, 1146, 1179, 1253, 1589
SatI GCNGC 4 cut(s) 154, 934, 1374, 1787
Sau3AI GATC 9 cut(s) 345, 433, 821, 964, 1581, 1618, 1624, 1807, 1840
Sau96I GGNCC 4 cut(s) 528, 669, 1171, 1653
ScaI AGTACT 2 cut(s) 386, 1540
SchI GAGTC 2 cut(s) 1271, 1569
ScrFI CCNGG 5 cut(s) 418, 579, 731, 1616, 1871
SduI GDGCHC 2 cut(s) 246, 273
SexAI ACCWGGT 1 cut(s) 1869
SfaNI GCATC 6 cut(s) 14, 650, 733, 802, 1474, 1537
SfuI TTCGAA 2 cut(s) 54, 751
SinI GGWCC 3 cut(s) 669, 1171, 1653
SmlI CTYRAG 3 cut(s) 1400, 1426, 1725
SmoI CTYRAG 3 cut(s) 1400, 1426, 1725
SseBI AGGCCT 1 cut(s) 421
SsiI CCGC 3 cut(s) 153, 876, 1506
SspI AATATT 1 cut(s) 1593
SspMI CTAG 1 cut(s) 1467
StuI AGGCCT 1 cut(s) 421
StyD4I CCNGG 5 cut(s) 416, 577, 729, 1614, 1869
StyI CCWWGG 2 cut(s) 1455, 1755
TaaI ACNGT 8 cut(s) 610, 685, 695, 779, 1016, 1112, 1320, 1394
TaiI ACGT 2 cut(s) 365, 1007
TaqI TCGA 4 cut(s) 54, 80, 751, 1436
TaqII GACCGA 2 cut(s) 941, 1621
TatI WGTACW 2 cut(s) 384, 1538
TauI GCSGC 1 cut(s) 156
TfiI GAWTC 3 cut(s) 82, 713, 1460
Tru1I TTAA 8 cut(s) 455, 471, 818, 911, 1146, 1179, 1253, 1589
Tru9I TTAA 8 cut(s) 455, 471, 818, 911, 1146, 1179, 1253, 1589
TscAI CASTG 5 cut(s) 335, 381, 595, 803, 1865
TseFI GTSAC 1 cut(s) 37
TseI GCWGC 3 cut(s) 933, 1373, 1786
Tsp45I GTSAC 1 cut(s) 37
TspDTI ATGAA 8 cut(s) 74, 84, 665, 750, 1508, 1542, 1674, 1865
TspGWI ACGGA 1 cut(s) 1091
TspRI CASTG 5 cut(s) 335, 381, 595, 803, 1865
Van91I CCANNNNNTGG 1 cut(s) 1650
VpaK11BI GGWCC 3 cut(s) 669, 1171, 1653
VspI ATTAAT 1 cut(s) 1589
XapI RAATTY 6 cut(s) 206, 493, 1181, 1206, 1282, 1709
XceI RCATGY 1 cut(s) 1502
XspI CTAG 1 cut(s) 1467
ZraI GACGTC 1 cut(s) 363
ZrmI AGTACT 2 cut(s) 386, 1540
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.