Rh5CG421600

metal ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000343
Physical Location & Seq
Reverse (-)
58194430 .. 58198229
3800 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG421600.1

Sequence Viewer

Length: 1080 bp
ATGAAAATGTTCTGTTTGAAGGCTTCAGCTAGTAACTCAGACGGCGAGGACCGCAAGTTGACAAGAAAGGAGAAGGACGGAGGATGTAAGATCGAGTACACTACTGAAAAACCAGCCACGCCATTGCTGGACACAATCAATTACCCAGCTCACATGAAGAATCTATCAACACAGGATCTCGAACAACTAGCAGCAGAGCTCAGAATGGATATTGTTCACAGTGTTTCACAGACAGGTGGGCATCTCAGTTTTAGCTTGGGTGTGGTGGAGCTATCAGTGGCATTGCATCATGTGTTCAGCACCCCTGACGATAAAATCATATGGGATGTTGGTCATCAGGATATCCAAGTTAGAAAAAAGCCAGGATTGTCCACTGATGACATATTCGATACGGTTTGTGCTTTTTGTGATAATGGTGGCAGCCTTTTGTGTTGTGAAGGGCGATGCCTAAGGTCCTTTCATGCAACTGTAAAGGACGGTGAGGGCTTTACTTGTGAATCTCTTGGATTTTCCCAGGATGAAGTAGATGCAATTCGAAAAATTGATTTCTACTGCAAGAACTGTCAATATAAACAGCATCAGTGCTATGCTTGTGGGAGGTTAGGATCCTCGGACAAATCTTTAGGTGCTGAGGTCTTCCCCTGCACTTCTGCAAGGTGTGGTCAGTTTTATCATCCTCATTGTATTGCAAAATTAAGATATCATGAGACCGGAGTTTCTGCAGAAGAACTTGAGAAAAGAATTATGCTGGGGGAATCTTTTACATGTCCAATTCACAAGTGCTGGTTTTGTAAGCAAGGAGAGAATAAGAAGGATCCTGAATTGCAGTTTGCTGTGTGTAGGCGTTGTCCTACATCCTACCACCGTAAATGCTTGCCACGGTATACTGGTGTCTTAATTGTGATCTCATTTATTTCCTTCAAATTTTCTGTTATAAGATCAAGGACTTTCATCGTGTCTAGTCGGTTGATGCAAAAACCAAATTTATCAGGGACATTCGTTTTGCAAAAGGCAAGGAAGGTGATGAGGAAGACATGGATACAAGAGCTTGGGAAGGTCTATTACCTGACCGTGTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006950 GO:0006952 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009791 GO:0009889 GO:0009893 GO:0009909 GO:0009911 GO:0009987 GO:0010228 GO:0010468 GO:0010556 GO:0010604 GO:0010638 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030154 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031326 GO:0031399 GO:0031401 GO:0031440 GO:0031935 GO:0031937 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0033043 GO:0033044 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043954 GO:0044030 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048468 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050684 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051052 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051276 GO:0051570 GO:0051574 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060968 GO:0061085 GO:0061087 GO:0061458 GO:0065007 GO:0070827 GO:0070828 GO:0070829 GO:0071840 GO:0080090 GO:0090436 GO:0097159 GO:0098542 GO:0099402 GO:0140110 GO:1900109 GO:1900111 GO:1900363 GO:1901363 GO:1902275 GO:1903311 GO:1903506 GO:1905269 GO:2000024 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNMT1-RFD

Protein Analysis

359

Amino Acids

40.59

Weight (kDa)

8.62

Isoelectric Point (pI)

34.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DXP_synthase_N PF13292 43 - 113 8.3e-28 1-deoxy-D-xylulose-5-phosphate synthase
PHD_NSD PF22908 191 - 259 5e-19 Histone-lysine N-methyltransferase NSD-like, PHD zinc finger
PHDvar_NSD PF23004 261 - 298 6.7e-06 Histone-lysine N-methyltransferase NSD-like, variant PHD zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000343)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48090 AT5G48090 AT5G48090 AT5G55390 AT5G55390 AT5G55390
fragaria_vesca FvH4_3g23690 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160
malus_domestica MD03G1191000.v1.1 MD11G1207800.v1.1 MD11G1208000.v1.1
prunus_persica Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227600_v2.0.a1 Prupe.4G227700_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1
pyrus_communis pycom01g03400 pycom03g14420 pycom11g18100 pycom11g18140 pycom11g18150 pycom11g18160
rosa_chinensis RchiOBHm_Chr2g0145981 RchiOBHm_Chr4g0405241 RchiOBHm_Chr4g0405271 RchiOBHm_Chr5g0016201 RchiOBHm_Chr5g0041831 RchiOBHm_Chr5g0041871 RchiOBHm_Chr5g0041881 RchiOBHm_Chr5g0059241
rosa_laevigata RLG00000002117 RLG00000008861 RLG00000008862 RLG00000011000 RLG00000033216 RLG00000034097 RLG00000034101
rosa_multiflora Rmu_sc0000161.1_g000001 Rmu_sc0000861.1_g000040 Rmu_sc0007522.1_g000003 Rmu_sc0009443.1_g000015 Rmu_sc0022129.1_g000001 Rmu_sc0042315.1_g000001
rosa_roxburghii Rroxscaffold_1G00038660 Rroxscaffold_1G00038690 Rroxscaffold_5G00349560 Rroxscaffold_5G00349610 Rroxscaffold_6G00388370 Rroxscaffold_7G00188740
rosa_rugosa Rorug03G0199700 Rorug04G0055400 Rorug04G0055500 Rorug04G0055900 Rorug04G0056000 Rorug04G0056100 Rorug04G0056100 Rorug04G0056200 Rorug05G0195600 Rorug05G0195700 Rorug05G0195800 Rorug05G0195900 Rorug05G0196800 Rorug05G0385000
rosa_samantha Rh4AG129900 Rh4AG130100 Rh4BG124200 Rh4BG124400 Rh4BG124500 Rh4CG137200 Rh4CG137300 Rh4DG123500 Rh4DG123700 Rh5AG280800 Rh5AG281400 Rh5BG286700 Rh5BG287000 Rh5BG397800 Rh5CG318100 Rh5CG318600 Rh5CG421600 Rh5DG132300 Rh5DG132400 Rh5DG295400 Rh5DG295700 Rh7BG475300
rosa_wichuraiana Rw0G001330 Rw0G005730 Rw4G008670 Rw4G010510 Rw4G010540 Rw5G026450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 935
AccI GTMKAC 1 cut(s) 884
AciI CCGC 1 cut(s) 52
AclWI GGATC 5 cut(s) 183, 600, 613, 809, 822
AcsI RAATTY 2 cut(s) 923, 982
AcuI CTGAAG 1 cut(s) 9
AfaI GTAC 1 cut(s) 98
AflIII ACRYGT 1 cut(s) 764
AgsI TTSAA 2 cut(s) 19, 922
AjnI CCWGG 2 cut(s) 361, 513
AluBI AGCT 6 cut(s) 29, 149, 199, 255, 271, 1048
AluI AGCT 6 cut(s) 29, 149, 199, 255, 271, 1048
Alw21I GWGCWC 1 cut(s) 201
Alw26I GTCTC 1 cut(s) 701
AlwI GGATC 5 cut(s) 183, 600, 613, 809, 822
ApeKI GCWGC 2 cut(s) 191, 420
ApoI RAATTY 2 cut(s) 923, 982
ArsI GACNNNNNNTTYG 2 cut(s) 985, 1017
Asp700I GAANNNNTTC 1 cut(s) 8
AspS9I GGNCC 2 cut(s) 49, 453
AsuHPI GGTGA 2 cut(s) 491, 1033
AsuII TTCGAA 1 cut(s) 535
AvaII GGWCC 2 cut(s) 49, 453
AxyI CCTNAGG 1 cut(s) 449
BamHI GGATCC 2 cut(s) 605, 814
BanII GRGCYC 1 cut(s) 201
BarI GAAGNNNNNNTAC 2 cut(s) 1046, 1078
BbsI GAAGAC 2 cut(s) 628, 1037
Bbv12I GWGCWC 1 cut(s) 201
BbvCI CCTCAGC 1 cut(s) 630
BbvI GCAGC 2 cut(s) 203, 432
BceAI ACGGC 1 cut(s) 58
BciT130I CCWGG 2 cut(s) 363, 515
BciVI GTATCC 1 cut(s) 1032
BcoDI GTCTC 1 cut(s) 701
BfaI CTAG 3 cut(s) 30, 188, 960
BfmI CTRYAG 1 cut(s) 720
BfuI GTATCC 1 cut(s) 1032
BisI GCNGC 2 cut(s) 192, 421
BlsI GCNGC 2 cut(s) 193, 422
Bme1390I CCNGG 2 cut(s) 363, 515
Bme18I GGWCC 2 cut(s) 49, 453
BmgT120I GGNCC 2 cut(s) 49, 453
BmiI GGNNCC 2 cut(s) 607, 816
BmrFI CCNGG 2 cut(s) 363, 515
BmsI GCATC 6 cut(s) 250, 295, 434, 517, 586, 960
BpiI GAAGAC 2 cut(s) 628, 1037
Bpu10I CCTNAGC 1 cut(s) 630
Bpu14I TTCGAA 1 cut(s) 535
BpuEI CTTGAG 1 cut(s) 752
BsaI GGTCTC 1 cut(s) 701
BsaJI CCNNGG 3 cut(s) 513, 609, 878
BsaWI WCCGGW 1 cut(s) 710
Bse1I ACTGG 1 cut(s) 892
Bse21I CCTNAGG 1 cut(s) 449
Bse3DI GCAATG 2 cut(s) 122, 281
BseBI CCWGG 2 cut(s) 363, 515
BseDI CCNNGG 3 cut(s) 513, 609, 878
BseGI GGATG 5 cut(s) 89, 331, 523, 673, 854
BseMI GCAATG 2 cut(s) 122, 281
BseMII CTCAG 4 cut(s) 51, 214, 259, 621
BseNI ACTGG 1 cut(s) 892
BseXI GCAGC 2 cut(s) 203, 432
BseYI CCCAGC 2 cut(s) 145, 748
BsgI GTGCAG 1 cut(s) 628
BsiHKAI GWGCWC 1 cut(s) 201
BsiSI CCGG 1 cut(s) 711
BslFI GGGAC 1 cut(s) 1006
BsmAI GTCTC 1 cut(s) 701
BsmFI GGGAC 1 cut(s) 1006
Bso31I GGTCTC 1 cut(s) 701
Bsp119I TTCGAA 1 cut(s) 535
Bsp1286I GDGCHC 1 cut(s) 201
Bsp143I GATC 6 cut(s) 90, 175, 605, 814, 903, 938
BspACI CCGC 1 cut(s) 52
BspCNI CTCAG 4 cut(s) 50, 213, 258, 622
BspHI TCATGA 1 cut(s) 703
BspLI GGNNCC 2 cut(s) 607, 816
BspMAI CTGCAG 1 cut(s) 724
BspPI GGATC 5 cut(s) 183, 600, 613, 809, 822
BspT104I TTCGAA 1 cut(s) 535
BspTNI GGTCTC 1 cut(s) 701
BsrDI GCAATG 2 cut(s) 122, 281
BsrI ACTGG 1 cut(s) 892
BssECI CCNNGG 3 cut(s) 513, 609, 878
BssMI GATC 6 cut(s) 90, 175, 605, 814, 903, 938
BssNAI GTATAC 1 cut(s) 885
Bst1107I GTATAC 1 cut(s) 885
Bst2UI CCWGG 2 cut(s) 363, 515
Bst4CI ACNGT 8 cut(s) 221, 394, 469, 479, 563, 866, 882, 1072
BstBI TTCGAA 1 cut(s) 535
BstC8I GCNNGC 1 cut(s) 875
BstDEI CTNAG 5 cut(s) 37, 200, 245, 449, 630
BstDSI CCRYGG 1 cut(s) 878
BstF5I GGATG 5 cut(s) 89, 331, 523, 673, 854
BstKTI GATC 6 cut(s) 93, 178, 608, 817, 906, 941
BstMAI GTCTC 1 cut(s) 701
BstMBI GATC 6 cut(s) 90, 175, 605, 814, 903, 938
BstMWI GCNNNNNNNGC 1 cut(s) 51
BstNI CCWGG 2 cut(s) 363, 515
BstNSI RCATGY 1 cut(s) 768
BstSCI CCNGG 2 cut(s) 361, 513
BstSFI CTRYAG 1 cut(s) 720
BstV1I GCAGC 2 cut(s) 203, 432
BstV2I GAAGAC 2 cut(s) 628, 1037
BstX2I RGATCY 3 cut(s) 175, 605, 814
BstYI RGATCY 3 cut(s) 175, 605, 814
BstZ17I GTATAC 1 cut(s) 885
Bsu36I CCTNAGG 1 cut(s) 449
BsuI GTATCC 1 cut(s) 1032
BtgI CCRYGG 1 cut(s) 878
BtgZI GCGATG 1 cut(s) 457
BtsCI GGATG 5 cut(s) 89, 331, 523, 673, 854
BtsIMutI CAGTG 4 cut(s) 226, 282, 372, 587
Cac8I GCNNGC 1 cut(s) 875
CciI TCATGA 1 cut(s) 703
Cfr13I GGNCC 2 cut(s) 49, 453
Csp6I GTAC 1 cut(s) 97
CviAII CATG 6 cut(s) 154, 290, 461, 704, 765, 1035
CviQI GTAC 1 cut(s) 97
DdeI CTNAG 5 cut(s) 37, 200, 245, 449, 630
DpnI GATC 6 cut(s) 92, 177, 607, 816, 905, 940
DpnII GATC 6 cut(s) 90, 175, 605, 814, 903, 938
Ecl136II GAGCTC 1 cut(s) 199
Eco24I GRGCYC 1 cut(s) 201
Eco31I GGTCTC 1 cut(s) 701
Eco32I GATATC 2 cut(s) 343, 701
Eco47I GGWCC 2 cut(s) 49, 453
Eco53kI GAGCTC 1 cut(s) 199
Eco57I CTGAAG 1 cut(s) 9
Eco81I CCTNAGG 1 cut(s) 449
EcoICRI GAGCTC 1 cut(s) 199
EcoO109I RGGNCCY 1 cut(s) 453
EcoRII CCWGG 2 cut(s) 361, 513
EcoRV GATATC 2 cut(s) 343, 701
EcoT38I GRGCYC 1 cut(s) 201
FaeI CATG 6 cut(s) 157, 293, 464, 707, 768, 1038
FaqI GGGAC 1 cut(s) 1006
FatI CATG 6 cut(s) 153, 289, 460, 703, 764, 1034
FauNDI CATATG 1 cut(s) 320
FblI GTMKAC 1 cut(s) 884
Fnu4HI GCNGC 2 cut(s) 192, 421
FokI GGATG 5 cut(s) 96, 338, 530, 660, 841
FriOI GRGCYC 1 cut(s) 201
Fsp4HI GCNGC 2 cut(s) 192, 421
FspBI CTAG 3 cut(s) 30, 188, 960
GluI GCNGC 2 cut(s) 192, 421
GsaI CCCAGC 2 cut(s) 149, 752
HapII CCGG 1 cut(s) 711
Hin1II CATG 6 cut(s) 157, 293, 464, 707, 768, 1038
HincII GTYRAC 1 cut(s) 60
HindII GTYRAC 1 cut(s) 60
HinfI GANTC 3 cut(s) 160, 497, 755
HpaII CCGG 1 cut(s) 711
HphI GGTGA 2 cut(s) 491, 1033
Hpy166II GTNNAC 5 cut(s) 60, 99, 217, 372, 885
Hpy188I TCNGA 3 cut(s) 40, 203, 613
Hpy188III TCNNGA 4 cut(s) 179, 338, 704, 818
Hpy8I GTNNAC 5 cut(s) 60, 99, 217, 372, 885
HpyAV CCTTC 7 cut(s) 13, 67, 431, 805, 928, 1012, 1048
HpyCH4III ACNGT 8 cut(s) 221, 394, 469, 479, 563, 866, 882, 1072
HpyF10VI GCNNNNNNNGC 1 cut(s) 51
HpyF3I CTNAG 5 cut(s) 37, 200, 245, 449, 630
Hsp92II CATG 6 cut(s) 157, 293, 464, 707, 768, 1038
Kzo9I GATC 6 cut(s) 90, 175, 605, 814, 903, 938
LmnI GCTCC 1 cut(s) 268
Lsp1109I GCAGC 2 cut(s) 203, 432
LweI GCATC 6 cut(s) 250, 295, 434, 517, 586, 960
MaeI CTAG 3 cut(s) 30, 188, 960
MaeIII GTNAC 1 cut(s) 32
MalI GATC 6 cut(s) 92, 177, 607, 816, 905, 940
MboI GATC 6 cut(s) 90, 175, 605, 814, 903, 938
MboII GAAGA 4 cut(s) 169, 628, 737, 1042
MflI RGATCY 3 cut(s) 175, 605, 814
MhlI GDGCHC 1 cut(s) 201
MnlI CCTC 8 cut(s) 40, 74, 475, 591, 619, 625, 687, 1020
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 2 cut(s) 695, 896
MspI CCGG 1 cut(s) 711
MspR9I CCNGG 2 cut(s) 363, 515
MvaI CCWGG 2 cut(s) 363, 515
MwoI GCNNNNNNNGC 1 cut(s) 51
NdeI CATATG 1 cut(s) 320
NdeII GATC 6 cut(s) 90, 175, 605, 814, 903, 938
NlaIII CATG 6 cut(s) 157, 293, 464, 707, 768, 1038
NlaIV GGNNCC 2 cut(s) 607, 816
NspI RCATGY 1 cut(s) 768
NspV TTCGAA 1 cut(s) 535
PagI TCATGA 1 cut(s) 703
PciI ACATGT 1 cut(s) 764
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 3 cut(s) 160, 497, 755
PkrI GCNGC 2 cut(s) 193, 422
PpuMI RGGWCCY 1 cut(s) 453
PscI ACATGT 1 cut(s) 764
PsiI TTATAA 1 cut(s) 935
Psp124BI GAGCTC 1 cut(s) 201
Psp5II RGGWCCY 1 cut(s) 453
Psp6I CCWGG 2 cut(s) 361, 513
PspFI CCCAGC 2 cut(s) 145, 748
PspGI CCWGG 2 cut(s) 361, 513
PspN4I GGNNCC 2 cut(s) 607, 816
PspPI GGNCC 2 cut(s) 49, 453
PspPPI RGGWCCY 1 cut(s) 453
PstI CTGCAG 1 cut(s) 724
PsuI RGATCY 3 cut(s) 175, 605, 814
RsaI GTAC 1 cut(s) 98
RsaNI GTAC 1 cut(s) 97
SacI GAGCTC 1 cut(s) 201
SaqAI TTAA 2 cut(s) 695, 896
SatI GCNGC 2 cut(s) 192, 421
Sau3AI GATC 6 cut(s) 90, 175, 605, 814, 903, 938
Sau96I GGNCC 2 cut(s) 49, 453
ScrFI CCNGG 2 cut(s) 363, 515
SduI GDGCHC 1 cut(s) 201
SfaNI GCATC 6 cut(s) 250, 295, 434, 517, 586, 960
SfcI CTRYAG 1 cut(s) 720
SfuI TTCGAA 1 cut(s) 535
SinI GGWCC 2 cut(s) 49, 453
SmlI CTYRAG 1 cut(s) 731
SmoI CTYRAG 1 cut(s) 731
SsiI CCGC 1 cut(s) 52
SspMI CTAG 3 cut(s) 30, 188, 960
SstI GAGCTC 1 cut(s) 201
StyD4I CCNGG 2 cut(s) 361, 513
TaaI ACNGT 8 cut(s) 221, 394, 469, 479, 563, 866, 882, 1072
TaqI TCGA 4 cut(s) 93, 180, 387, 535
TatI WGTACW 1 cut(s) 96
TfiI GAWTC 3 cut(s) 160, 497, 755
Tru1I TTAA 2 cut(s) 695, 896
Tru9I TTAA 2 cut(s) 695, 896
TscAI CASTG 4 cut(s) 226, 282, 379, 587
TseI GCWGC 2 cut(s) 191, 420
TspDTI ATGAA 5 cut(s) 17, 170, 449, 534, 940
TspGWI ACGGA 1 cut(s) 93
TspRI CASTG 4 cut(s) 226, 282, 379, 587
VpaK11BI GGWCC 2 cut(s) 49, 453
XapI RAATTY 2 cut(s) 923, 982
XceI RCATGY 1 cut(s) 768
XcmI CCANNNNNNNNNTGG 1 cut(s) 124
XmiI GTMKAC 1 cut(s) 884
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 3 cut(s) 30, 188, 960
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.