RchiOBHm_Chr5g0016201

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000343
Physical Location & Seq
Forward (+)
11199243 .. 11199944
702 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29659

Sequence Viewer

Length: 186 bp
ATGAGTGATTTCGTACCTAGAGATATTACTTGTATTTATTTTATCGATGTTGGTTTTGCTTTGGGATCTTTGAAGTCTGATACTTTGTTTTCTATTAGGTGTCGAGGACAATTACTTGAGATTCAATTGTGTTATGGTCTTTTGCATATGTTTCAAAAGGAACTCGATGTGTGTACCAGAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

61

Amino Acids

7.02

Weight (kDa)

5.55

Isoelectric Point (pI)

18.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000343)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48090 AT5G48090 AT5G48090 AT5G55390 AT5G55390 AT5G55390
fragaria_vesca FvH4_3g23690 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160
malus_domestica MD03G1191000.v1.1 MD11G1207800.v1.1 MD11G1208000.v1.1
prunus_persica Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227600_v2.0.a1 Prupe.4G227700_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1
pyrus_communis pycom01g03400 pycom03g14420 pycom11g18100 pycom11g18140 pycom11g18150 pycom11g18160
rosa_chinensis RchiOBHm_Chr2g0145981 RchiOBHm_Chr4g0405241 RchiOBHm_Chr4g0405271 RchiOBHm_Chr5g0016201 RchiOBHm_Chr5g0041831 RchiOBHm_Chr5g0041871 RchiOBHm_Chr5g0041881 RchiOBHm_Chr5g0059241
rosa_laevigata RLG00000002117 RLG00000008861 RLG00000008862 RLG00000011000 RLG00000033216 RLG00000034097 RLG00000034101
rosa_multiflora Rmu_sc0000161.1_g000001 Rmu_sc0000861.1_g000040 Rmu_sc0007522.1_g000003 Rmu_sc0009443.1_g000015 Rmu_sc0022129.1_g000001 Rmu_sc0042315.1_g000001
rosa_roxburghii Rroxscaffold_1G00038660 Rroxscaffold_1G00038690 Rroxscaffold_5G00349560 Rroxscaffold_5G00349610 Rroxscaffold_6G00388370 Rroxscaffold_7G00188740
rosa_rugosa Rorug03G0199700 Rorug04G0055400 Rorug04G0055500 Rorug04G0055900 Rorug04G0056000 Rorug04G0056100 Rorug04G0056100 Rorug04G0056200 Rorug05G0195600 Rorug05G0195700 Rorug05G0195800 Rorug05G0195900 Rorug05G0196800 Rorug05G0385000
rosa_samantha Rh4AG129900 Rh4AG130100 Rh4BG124200 Rh4BG124400 Rh4BG124500 Rh4CG137200 Rh4CG137300 Rh4DG123500 Rh4DG123700 Rh5AG280800 Rh5AG281400 Rh5BG286700 Rh5BG287000 Rh5BG397800 Rh5CG318100 Rh5CG318600 Rh5CG421600 Rh5DG132300 Rh5DG132400 Rh5DG295400 Rh5DG295700 Rh7BG475300
rosa_wichuraiana Rw0G001330 Rw0G005730 Rw4G008670 Rw4G010510 Rw4G010540 Rw5G026450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 73
AfaI GTAC 2 cut(s) 15, 175
AgsI TTSAA 3 cut(s) 73, 125, 155
AlwI GGATC 1 cut(s) 73
BfaI CTAG 1 cut(s) 18
BpuEI CTTGAG 1 cut(s) 137
Bsa29I ATCGAT 1 cut(s) 45
BseCI ATCGAT 1 cut(s) 45
BshVI ATCGAT 1 cut(s) 45
Bsp143I GATC 1 cut(s) 65
BspDI ATCGAT 1 cut(s) 45
BspPI GGATC 1 cut(s) 73
BssMI GATC 1 cut(s) 65
BstKTI GATC 1 cut(s) 68
BstMBI GATC 1 cut(s) 65
BstX2I RGATCY 1 cut(s) 65
BstYI RGATCY 1 cut(s) 65
Bsu15I ATCGAT 1 cut(s) 45
BsuTUI ATCGAT 1 cut(s) 45
ClaI ATCGAT 1 cut(s) 45
Csp6I GTAC 2 cut(s) 14, 174
CviQI GTAC 2 cut(s) 14, 174
DpnI GATC 1 cut(s) 67
DpnII GATC 1 cut(s) 65
FaiI YATR 4 cut(s) 135, 147, 149, 184
FauNDI CATATG 1 cut(s) 147
FspBI CTAG 1 cut(s) 18
FspEI CC 8 cut(s) 30, 36, 47, 48, 82, 90, 120, 143
HinfI GANTC 1 cut(s) 121
Hpy166II GTNNAC 1 cut(s) 174
Hpy188I TCNGA 1 cut(s) 79
Hpy8I GTNNAC 1 cut(s) 174
HpyCH4V TGCA 1 cut(s) 145
Kzo9I GATC 1 cut(s) 65
MaeI CTAG 1 cut(s) 18
MalI GATC 1 cut(s) 67
MboI GATC 1 cut(s) 65
MfeI CAATTG 1 cut(s) 125
MflI RGATCY 1 cut(s) 65
MluCI AATT 2 cut(s) 110, 125
MnlI CCTC 1 cut(s) 98
MunI CAATTG 1 cut(s) 125
NdeI CATATG 1 cut(s) 147
NdeII GATC 1 cut(s) 65
PfeI GAWTC 1 cut(s) 121
PsuI RGATCY 1 cut(s) 65
RsaI GTAC 2 cut(s) 15, 175
RsaNI GTAC 2 cut(s) 14, 174
Sau3AI GATC 1 cut(s) 65
SetI ASST 2 cut(s) 19, 101
SgeI CNNG 5 cut(s) 30, 42, 116, 128, 176
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
Sse9I AATT 2 cut(s) 110, 125
SspMI CTAG 1 cut(s) 18
TaqI TCGA 3 cut(s) 45, 103, 165
TasI AATT 2 cut(s) 110, 125
TfiI GAWTC 1 cut(s) 121
XspI CTAG 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.