Rmu_sc0009443.1_g000015

metal ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009443.1
OG0000343
Physical Location & Seq
Forward (+)
64260 .. 64867
608 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009443.1_g000015.1.cds

Sequence Viewer

Length: 519 bp
atggcatcttttgataatgaggcagagcctctgccagttacgaattactatttcgaagatgacaagaatgaacctatttcgtttcatgttttgccaattgaatggagtaaggataagagacagaatgggaagaaagaactcatatatttgcgcggcattgccgataatgggcttcagaccatacatagagctgttatagcatggaaatttgacctttttagtgtgaggccggtgatatcggtgctctccaggaaaaacaagtggattgtgcttcagaggccaaggaagagctttgagaagataataaggccaatcttggtaacactccactgtcttagttatgtgattagaaatccggaaacatctgcgaaatctctgtgggagtacttagctaatgtttttagtttgtatgaggtcaggccttctcaaaatgatctcgcggagcatatgcctttaattagggaggctcttaaatgggaggcttctttggcaaagtccaaggtttgtctattttcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006950 GO:0006952 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009791 GO:0009889 GO:0009893 GO:0009909 GO:0009911 GO:0009987 GO:0010228 GO:0010468 GO:0010556 GO:0010604 GO:0010638 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030154 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031326 GO:0031399 GO:0031401 GO:0031440 GO:0031935 GO:0031937 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0033043 GO:0033044 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043954 GO:0044030 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048468 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050684 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051052 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051276 GO:0051570 GO:0051574 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060968 GO:0061085 GO:0061087 GO:0061458 GO:0065007 GO:0070827 GO:0070828 GO:0070829 GO:0071840 GO:0080090 GO:0090436 GO:0097159 GO:0098542 GO:0099402 GO:0140110 GO:1900109 GO:1900111 GO:1900363 GO:1901363 GO:1902275 GO:1903311 GO:1903506 GO:1905269 GO:2000024 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNMT1-RFD

Protein Analysis

172

Amino Acids

20.1

Weight (kDa)

9.2

Isoelectric Point (pI)

39.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000343)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48090 AT5G48090 AT5G48090 AT5G55390 AT5G55390 AT5G55390
fragaria_vesca FvH4_3g23690 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160
malus_domestica MD03G1191000.v1.1 MD11G1207800.v1.1 MD11G1208000.v1.1
prunus_persica Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227600_v2.0.a1 Prupe.4G227700_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1
pyrus_communis pycom01g03400 pycom03g14420 pycom11g18100 pycom11g18140 pycom11g18150 pycom11g18160
rosa_chinensis RchiOBHm_Chr2g0145981 RchiOBHm_Chr4g0405241 RchiOBHm_Chr4g0405271 RchiOBHm_Chr5g0016201 RchiOBHm_Chr5g0041831 RchiOBHm_Chr5g0041871 RchiOBHm_Chr5g0041881 RchiOBHm_Chr5g0059241
rosa_laevigata RLG00000002117 RLG00000008861 RLG00000008862 RLG00000011000 RLG00000033216 RLG00000034097 RLG00000034101
rosa_multiflora Rmu_sc0000161.1_g000001 Rmu_sc0000861.1_g000040 Rmu_sc0007522.1_g000003 Rmu_sc0009443.1_g000015 Rmu_sc0022129.1_g000001 Rmu_sc0042315.1_g000001
rosa_roxburghii Rroxscaffold_1G00038660 Rroxscaffold_1G00038690 Rroxscaffold_5G00349560 Rroxscaffold_5G00349610 Rroxscaffold_6G00388370 Rroxscaffold_7G00188740
rosa_rugosa Rorug03G0199700 Rorug04G0055400 Rorug04G0055500 Rorug04G0055900 Rorug04G0056000 Rorug04G0056100 Rorug04G0056100 Rorug04G0056200 Rorug05G0195600 Rorug05G0195700 Rorug05G0195800 Rorug05G0195900 Rorug05G0196800 Rorug05G0385000
rosa_samantha Rh4AG129900 Rh4AG130100 Rh4BG124200 Rh4BG124400 Rh4BG124500 Rh4CG137200 Rh4CG137300 Rh4DG123500 Rh4DG123700 Rh5AG280800 Rh5AG281400 Rh5BG286700 Rh5BG287000 Rh5BG397800 Rh5CG318100 Rh5CG318600 Rh5CG421600 Rh5DG132300 Rh5DG132400 Rh5DG295400 Rh5DG295700 Rh7BG475300
rosa_wichuraiana Rw0G001330 Rw0G005730 Rw4G008670 Rw4G010510 Rw4G010540 Rw5G026450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 153, 440
AccIII TCCGGA 1 cut(s) 355
AciI CCGC 2 cut(s) 153, 440
AcsI RAATTY 1 cut(s) 206
AcuI CTGAAG 2 cut(s) 158, 257
AfaI GTAC 1 cut(s) 386
AfiI CCNNNNNNNGG 1 cut(s) 168
AgsI TTSAA 1 cut(s) 101
AjnI CCWGG 1 cut(s) 248
AluBI AGCT 3 cut(s) 191, 291, 392
AluI AGCT 3 cut(s) 191, 291, 392
Alw21I GWGCWC 1 cut(s) 246
Alw26I GTCTC 1 cut(s) 112
Aor13HI TCCGGA 1 cut(s) 355
AoxI GGCC 4 cut(s) 227, 278, 308, 419
ApoI RAATTY 1 cut(s) 206
AspLEI GCGC 1 cut(s) 153
AsuHPI GGTGA 1 cut(s) 244
AsuII TTCGAA 1 cut(s) 54
Bbv12I GWGCWC 1 cut(s) 246
BciT130I CCWGG 1 cut(s) 250
BcoDI GTCTC 1 cut(s) 112
BisI GCNGC 1 cut(s) 154
BlsI GCNGC 1 cut(s) 155
BmcAI AGTACT 1 cut(s) 386
Bme1390I CCNGG 1 cut(s) 250
BmrFI CCNGG 1 cut(s) 250
BmsI GCATC 1 cut(s) 14
BpmI CTGGAG 1 cut(s) 232
Bpu14I TTCGAA 1 cut(s) 54
BsaJI CCNNGG 2 cut(s) 281, 498
BsaWI WCCGGW 1 cut(s) 355
Bsc4I CCNNNNNNNGG 1 cut(s) 168
Bse118I RCCGGY 1 cut(s) 229
Bse1I ACTGG 1 cut(s) 35
Bse3DI GCAATG 1 cut(s) 156
BseAI TCCGGA 1 cut(s) 355
BseBI CCWGG 1 cut(s) 250
BseDI CCNNGG 2 cut(s) 281, 498
BseLI CCNNNNNNNGG 1 cut(s) 168
BseMI GCAATG 1 cut(s) 156
BseNI ACTGG 1 cut(s) 35
Bsh1236I CGCG 2 cut(s) 153, 440
BshFI GGCC 4 cut(s) 229, 280, 310, 421
BsiHKAI GWGCWC 1 cut(s) 246
BsiSI CCGG 2 cut(s) 230, 356
BslI CCNNNNNNNGG 1 cut(s) 168
BsmAI GTCTC 1 cut(s) 112
BsnI GGCC 4 cut(s) 229, 280, 310, 421
Bsp119I TTCGAA 1 cut(s) 54
Bsp1286I GDGCHC 1 cut(s) 246
Bsp13I TCCGGA 1 cut(s) 355
Bsp143I GATC 1 cut(s) 433
BspACI CCGC 2 cut(s) 153, 440
BspANI GGCC 4 cut(s) 229, 280, 310, 421
BspEI TCCGGA 1 cut(s) 355
BspFNI CGCG 2 cut(s) 153, 440
BspQI GCTCTTC 1 cut(s) 281
BspT104I TTCGAA 1 cut(s) 54
BsrDI GCAATG 1 cut(s) 156
BsrFI RCCGGY 1 cut(s) 229
BsrI ACTGG 1 cut(s) 35
BssAI RCCGGY 1 cut(s) 229
BssECI CCNNGG 2 cut(s) 281, 498
BssMI GATC 1 cut(s) 433
BssT1I CCWWGG 2 cut(s) 281, 498
Bst2UI CCWGG 1 cut(s) 250
Bst4CI ACNGT 1 cut(s) 332
Bst6I CTCTTC 1 cut(s) 281
BstBI TTCGAA 1 cut(s) 54
BstDEI CTNAG 3 cut(s) 335, 388, 516
BstFNI CGCG 2 cut(s) 153, 440
BstHHI GCGC 1 cut(s) 153
BstKTI GATC 1 cut(s) 436
BstMAI GTCTC 1 cut(s) 112
BstMBI GATC 1 cut(s) 433
BstMWI GCNNNNNNNGC 3 cut(s) 197, 277, 488
BstNI CCWGG 1 cut(s) 250
BstSCI CCNGG 1 cut(s) 248
BstUI CGCG 2 cut(s) 153, 440
BstXI CCANNNNNNTGG 1 cut(s) 102
BsuRI GGCC 4 cut(s) 229, 280, 310, 421
BtsIMutI CAGTG 1 cut(s) 328
CfoI GCGC 1 cut(s) 153
Cfr10I RCCGGY 1 cut(s) 229
Csp6I GTAC 1 cut(s) 385
CviAII CATG 2 cut(s) 86, 201
CviQI GTAC 1 cut(s) 385
DdeI CTNAG 3 cut(s) 335, 388, 516
DpnI GATC 1 cut(s) 435
DpnII GATC 1 cut(s) 433
Eam1104I CTCTTC 1 cut(s) 281
EarI CTCTTC 1 cut(s) 281
Eco130I CCWWGG 2 cut(s) 281, 498
Eco147I AGGCCT 1 cut(s) 421
Eco32I GATATC 1 cut(s) 237
Eco57I CTGAAG 2 cut(s) 158, 257
EcoRII CCWGG 1 cut(s) 248
EcoRV GATATC 1 cut(s) 237
EcoT14I CCWWGG 2 cut(s) 281, 498
ErhI CCWWGG 2 cut(s) 281, 498
FaeI CATG 2 cut(s) 89, 204
FatI CATG 2 cut(s) 85, 200
FauNDI CATATG 1 cut(s) 447
Fnu4HI GCNGC 1 cut(s) 154
Fsp4HI GCNGC 1 cut(s) 154
GlaI GCGC 1 cut(s) 152
GluI GCNGC 1 cut(s) 154
GsuI CTGGAG 1 cut(s) 232
HaeIII GGCC 4 cut(s) 229, 280, 310, 421
HapII CCGG 2 cut(s) 230, 356
HhaI GCGC 1 cut(s) 153
Hin1II CATG 2 cut(s) 89, 204
Hin6I GCGC 1 cut(s) 151
HinP1I GCGC 1 cut(s) 151
HpaII CCGG 2 cut(s) 230, 356
HphI GGTGA 1 cut(s) 244
Hpy188I TCNGA 2 cut(s) 177, 276
Hpy188III TCNNGA 1 cut(s) 356
HpyAV CCTTC 1 cut(s) 432
HpyCH4III ACNGT 1 cut(s) 332
HpyF10VI GCNNNNNNNGC 3 cut(s) 197, 277, 488
HpyF3I CTNAG 3 cut(s) 335, 388, 516
Hsp92II CATG 2 cut(s) 89, 204
HspAI GCGC 1 cut(s) 151
Kpn2I TCCGGA 1 cut(s) 355
Kzo9I GATC 1 cut(s) 433
LguI GCTCTTC 1 cut(s) 281
LmnI GCTCC 1 cut(s) 442
LpnPI CCDG 6 cut(s) 48, 235, 243, 262, 369, 403
LweI GCATC 1 cut(s) 14
MaeIII GTNAC 2 cut(s) 37, 319
MalI GATC 1 cut(s) 435
MboI GATC 1 cut(s) 433
MboII GAAGA 4 cut(s) 68, 142, 298, 310
MfeI CAATTG 1 cut(s) 96
MhlI GDGCHC 1 cut(s) 246
MluCI AATT 4 cut(s) 43, 96, 206, 456
MnlI CCTC 7 cut(s) 13, 39, 219, 270, 406, 457, 472
MroI TCCGGA 1 cut(s) 355
MseI TTAA 2 cut(s) 455, 471
MspI CCGG 2 cut(s) 230, 356
MspR9I CCNGG 1 cut(s) 250
MunI CAATTG 1 cut(s) 96
MvaI CCWGG 1 cut(s) 250
MvnI CGCG 2 cut(s) 153, 440
MwoI GCNNNNNNNGC 3 cut(s) 197, 277, 488
NdeI CATATG 1 cut(s) 447
NdeII GATC 1 cut(s) 433
NlaIII CATG 2 cut(s) 89, 204
NspV TTCGAA 1 cut(s) 54
PceI AGGCCT 1 cut(s) 421
PciSI GCTCTTC 1 cut(s) 281
PfoI TCCNGGA 1 cut(s) 248
PkrI GCNGC 1 cut(s) 155
Psp6I CCWGG 1 cut(s) 248
PspGI CCWGG 1 cut(s) 248
RsaI GTAC 1 cut(s) 386
RsaNI GTAC 1 cut(s) 385
SapI GCTCTTC 1 cut(s) 281
SaqAI TTAA 2 cut(s) 455, 471
SatI GCNGC 1 cut(s) 154
Sau3AI GATC 1 cut(s) 433
ScaI AGTACT 1 cut(s) 386
ScrFI CCNGG 1 cut(s) 250
SduI GDGCHC 1 cut(s) 246
SetI ASST 7 cut(s) 76, 193, 216, 293, 394, 417, 504
SfaNI GCATC 1 cut(s) 14
SfuI TTCGAA 1 cut(s) 54
Sse9I AATT 4 cut(s) 43, 96, 206, 456
SseBI AGGCCT 1 cut(s) 421
SsiI CCGC 2 cut(s) 153, 440
StuI AGGCCT 1 cut(s) 421
StyD4I CCNGG 1 cut(s) 248
StyI CCWWGG 2 cut(s) 281, 498
TaaI ACNGT 1 cut(s) 332
TaqI TCGA 1 cut(s) 54
TasI AATT 4 cut(s) 43, 96, 206, 456
TatI WGTACW 1 cut(s) 384
TauI GCSGC 1 cut(s) 156
Tru1I TTAA 2 cut(s) 455, 471
Tru9I TTAA 2 cut(s) 455, 471
TscAI CASTG 1 cut(s) 335
TspDTI ATGAA 2 cut(s) 74, 84
TspRI CASTG 1 cut(s) 335
XapI RAATTY 1 cut(s) 206
ZrmI AGTACT 1 cut(s) 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.