Rorug05G0195700

metal ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000343
Physical Location & Seq
Forward (+)
19271232 .. 19271480
249 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0195700.1

Sequence Viewer

Length: 249 bp
ATGGTGGTAGTCGAGGATGGAGCAATGCCCGAGCTTAAGAAGTTAATATTGTCTAGATGTCAGAATCTGAAGTTACTTCCATATGGCATTGATAGGCTTATCTTGCTTGAAGAAATGCTTCTGTATGACATGCCCGAAGAATTCATTGCTAGGCTTCAGAAGGATAGCGAAGACCGTTACTTGGTTGAGAATCTTCGAGTCATCCAATCTTTCTATTCTGGGAGCACTGGATACCAAAATCTTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006950 GO:0006952 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009791 GO:0009889 GO:0009893 GO:0009909 GO:0009911 GO:0009987 GO:0010228 GO:0010468 GO:0010556 GO:0010604 GO:0010638 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030154 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031326 GO:0031399 GO:0031401 GO:0031440 GO:0031935 GO:0031937 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0033043 GO:0033044 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043954 GO:0044030 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048468 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050684 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051052 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051276 GO:0051570 GO:0051574 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060968 GO:0061085 GO:0061087 GO:0061458 GO:0065007 GO:0070827 GO:0070828 GO:0070829 GO:0071840 GO:0080090 GO:0090436 GO:0097159 GO:0098542 GO:0099402 GO:0140110 GO:1900109 GO:1900111 GO:1900363 GO:1901363 GO:1902275 GO:1903311 GO:1903506 GO:1905269 GO:2000024 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNMT1-RFD

Protein Analysis

82

Amino Acids

9.56

Weight (kDa)

4.68

Isoelectric Point (pI)

57.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000343)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48090 AT5G48090 AT5G48090 AT5G55390 AT5G55390 AT5G55390
fragaria_vesca FvH4_3g23690 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160
malus_domestica MD03G1191000.v1.1 MD11G1207800.v1.1 MD11G1208000.v1.1
prunus_persica Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227600_v2.0.a1 Prupe.4G227700_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1
pyrus_communis pycom01g03400 pycom03g14420 pycom11g18100 pycom11g18140 pycom11g18150 pycom11g18160
rosa_chinensis RchiOBHm_Chr2g0145981 RchiOBHm_Chr4g0405241 RchiOBHm_Chr4g0405271 RchiOBHm_Chr5g0016201 RchiOBHm_Chr5g0041831 RchiOBHm_Chr5g0041871 RchiOBHm_Chr5g0041881 RchiOBHm_Chr5g0059241
rosa_laevigata RLG00000002117 RLG00000008861 RLG00000008862 RLG00000011000 RLG00000033216 RLG00000034097 RLG00000034101
rosa_multiflora Rmu_sc0000161.1_g000001 Rmu_sc0000861.1_g000040 Rmu_sc0007522.1_g000003 Rmu_sc0009443.1_g000015 Rmu_sc0022129.1_g000001 Rmu_sc0042315.1_g000001
rosa_roxburghii Rroxscaffold_1G00038660 Rroxscaffold_1G00038690 Rroxscaffold_5G00349560 Rroxscaffold_5G00349610 Rroxscaffold_6G00388370 Rroxscaffold_7G00188740
rosa_rugosa Rorug03G0199700 Rorug04G0055400 Rorug04G0055500 Rorug04G0055900 Rorug04G0056000 Rorug04G0056100 Rorug04G0056100 Rorug04G0056200 Rorug05G0195600 Rorug05G0195700 Rorug05G0195800 Rorug05G0195900 Rorug05G0196800 Rorug05G0385000
rosa_samantha Rh4AG129900 Rh4AG130100 Rh4BG124200 Rh4BG124400 Rh4BG124500 Rh4CG137200 Rh4CG137300 Rh4DG123500 Rh4DG123700 Rh5AG280800 Rh5AG281400 Rh5BG286700 Rh5BG287000 Rh5BG397800 Rh5CG318100 Rh5CG318600 Rh5CG421600 Rh5DG132300 Rh5DG132400 Rh5DG295400 Rh5DG295700 Rh7BG475300
rosa_wichuraiana Rw0G001330 Rw0G005730 Rw4G008670 Rw4G010510 Rw4G010540 Rw5G026450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 140
AcuI CTGAAG 2 cut(s) 89, 140
AfiI CCNNNNNNNGG 1 cut(s) 181
AflII CTTAAG 1 cut(s) 35
AgsI TTSAA 1 cut(s) 110
AluBI AGCT 1 cut(s) 34
AluI AGCT 1 cut(s) 34
Alw21I GWGCWC 1 cut(s) 227
AlwNI CAGNNNCTG 1 cut(s) 67
Ama87I CYCGRG 1 cut(s) 29
ApoI RAATTY 1 cut(s) 140
Asp700I GAANNNNTTC 1 cut(s) 117
AvaI CYCGRG 1 cut(s) 29
BbsI GAAGAC 1 cut(s) 177
Bbv12I GWGCWC 1 cut(s) 227
BccI CCATC 1 cut(s) 11
BciVI GTATCC 1 cut(s) 224
BfaI CTAG 2 cut(s) 54, 150
BfrI CTTAAG 1 cut(s) 35
BfuI GTATCC 1 cut(s) 224
BmeT110I CYCGRG 1 cut(s) 29
BpiI GAAGAC 1 cut(s) 177
Bsc4I CCNNNNNNNGG 1 cut(s) 181
Bse1I ACTGG 1 cut(s) 232
Bse3DI GCAATG 2 cut(s) 30, 144
BseGI GGATG 2 cut(s) 22, 201
BseLI CCNNNNNNNGG 1 cut(s) 181
BseMI GCAATG 2 cut(s) 30, 144
BseNI ACTGG 1 cut(s) 232
BsiHKAI GWGCWC 1 cut(s) 227
BsiHKCI CYCGRG 1 cut(s) 29
BslI CCNNNNNNNGG 1 cut(s) 181
BsoBI CYCGRG 1 cut(s) 29
Bsp1286I GDGCHC 1 cut(s) 227
BspTI CTTAAG 1 cut(s) 35
BsrDI GCAATG 2 cut(s) 30, 144
BsrI ACTGG 1 cut(s) 232
Bst4CI ACNGT 1 cut(s) 176
BstAFI CTTAAG 1 cut(s) 35
BstF5I GGATG 2 cut(s) 22, 201
BstMWI GCNNNNNNNGC 1 cut(s) 103
BstNSI RCATGY 1 cut(s) 133
BstV2I GAAGAC 1 cut(s) 177
BsuI GTATCC 1 cut(s) 224
BtsCI GGATG 2 cut(s) 22, 201
BtsIMutI CAGTG 1 cut(s) 225
CaiI CAGNNNCTG 1 cut(s) 67
CviAII CATG 1 cut(s) 130
CviJI RGCY 3 cut(s) 34, 97, 154
CviKI_1 RGCY 3 cut(s) 34, 97, 154
Eco57I CTGAAG 2 cut(s) 89, 140
Eco88I CYCGRG 1 cut(s) 29
EcoRI GAATTC 1 cut(s) 140
FaeI CATG 1 cut(s) 133
FaiI YATR 4 cut(s) 82, 84, 126, 131
FalI AAGNNNNNCTT 2 cut(s) 102, 134
FatI CATG 1 cut(s) 129
FauNDI CATATG 1 cut(s) 82
FokI GGATG 2 cut(s) 29, 188
FspBI CTAG 2 cut(s) 54, 150
Hin1II CATG 1 cut(s) 133
HinfI GANTC 3 cut(s) 64, 190, 198
Hpy188I TCNGA 3 cut(s) 63, 69, 159
Hpy188III TCNNGA 2 cut(s) 54, 246
HpyAV CCTTC 1 cut(s) 154
HpyCH4III ACNGT 1 cut(s) 176
HpyF10VI GCNNNNNNNGC 1 cut(s) 103
Hsp92II CATG 1 cut(s) 133
LmnI GCTCC 2 cut(s) 20, 222
LpnPI CCDG 2 cut(s) 204, 213
MaeI CTAG 2 cut(s) 54, 150
MaeIII GTNAC 2 cut(s) 72, 176
MboII GAAGA 4 cut(s) 122, 149, 182, 185
MhlI GDGCHC 1 cut(s) 227
MluCI AATT 1 cut(s) 140
MlyI GAGTC 1 cut(s) 207
MnlI CCTC 1 cut(s) 7
MroXI GAANNNNTTC 1 cut(s) 117
MseI TTAA 2 cut(s) 36, 44
MspCI CTTAAG 1 cut(s) 35
MwoI GCNNNNNNNGC 1 cut(s) 103
NdeI CATATG 1 cut(s) 82
NlaIII CATG 1 cut(s) 133
NspI RCATGY 1 cut(s) 133
PdmI GAANNNNTTC 1 cut(s) 117
PfeI GAWTC 2 cut(s) 64, 190
PleI GAGTC 1 cut(s) 206
PpsI GAGTC 1 cut(s) 206
PstNI CAGNNNCTG 1 cut(s) 67
SaqAI TTAA 2 cut(s) 36, 44
SchI GAGTC 1 cut(s) 207
SduI GDGCHC 1 cut(s) 227
SetI ASST 1 cut(s) 36
SmlI CTYRAG 1 cut(s) 35
SmoI CTYRAG 1 cut(s) 35
Sse9I AATT 1 cut(s) 140
SspI AATATT 1 cut(s) 48
SspMI CTAG 2 cut(s) 54, 150
TaaI ACNGT 1 cut(s) 176
TaqI TCGA 2 cut(s) 12, 196
TasI AATT 1 cut(s) 140
TfiI GAWTC 2 cut(s) 64, 190
Tru1I TTAA 2 cut(s) 36, 44
Tru9I TTAA 2 cut(s) 36, 44
TscAI CASTG 1 cut(s) 232
TspDTI ATGAA 1 cut(s) 133
TspRI CASTG 1 cut(s) 232
Vha464I CTTAAG 1 cut(s) 35
XapI RAATTY 1 cut(s) 140
XbaI TCTAGA 1 cut(s) 53
XceI RCATGY 1 cut(s) 133
XmnI GAANNNNTTC 1 cut(s) 117
XspI CTAG 2 cut(s) 54, 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.