FvH4_5g31160

metal ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000343
Physical Location & Seq
Forward (+)
22078400 .. 22084936
6537 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g31160.t3

Sequence Viewer

Length: 1314 bp
ATGCCTTTAATTAATGAAGCTGTTCAGAAGGAGGATGCTTTGGCCAAGTCCAAGTTTATAGTCAACTTCTCTCTTCAAGAGCCCACAAAGAGGAACCTATCTGATGAGGATATCCAATTAAGAAGAAAGCCACGATCGTCCACTGATGACCTATTTGAAAATGTTTGTGCTTTTTGTGATAACGGTGGTGACCTGTTGTGTTGTGAAGGGCGATGCCTAAGGTCTTTTCATGCAACTGTAAAGGATGGTGAGGACTATACTTGTGAATCTCTTGGATTTACTCGGGATCAAGAAGATGCATATCGAAAAATTGATTTCTACTGCAAAAATTGTCAACATAAACAGCATCAGTGCTATGCTTGTGGGAAGTTAGGCTCCTCTGACAAATATTTTGGTGCTGAGGTCTTCCTCTGCACTTTTCCAAGGTGCGGTCAGTTTTATCATCCTCATTGTGTTGCAAAATATGAGACTGGAGTTTCTGATGAAGAACTTGAGAAAAGAATTATGCTGGGGGAATCTTTTACATGTCCAATTCACAAGTGCTGCTCTTGTAAGCAATTAGAGGCTGCTGATATTAAGGACCCTGGATTGCAGTTTGCTGTGTGTAGGCGTTGTCCTACATCCTACCACCGTAAATGCTTGCCACGGGACATTCATTTTGCAAAAGACAAGGATGATGAAGACACAGAGATAAGAGCTTGGGAAGGTCTATTATCTAACCAGGTGCTAATATATTGCACAAAACATAAAATGGTTAAAACCCTTAGAACTCCAAGAAGGGACCATGTTAAATTCCCTGATGTCAATGACAAGGAAATTGCTGCTGAGAAAAAGACTTATTATCAAGAGAAGAAGAGAAGATTAACATCAGAGTCCCATGTAGTCAGTGAGAATTCTGTGTCAAGGAAGGACCATGTTAAATTCCCCAATGTCAATGACAAGGAAACTGCTGCTGAGAAAAAGAGGTCTTGTCAACAGAAGAAGAGAAGATTAACATCAGAGTCCCATGTAGTCGATGAGAATTCTGTGTCAAGGAGAAAAAAGCTTTCCTCAGAAGGGTTGCATAAAGAAGAAAATGCTCCTATACCGATGAGTCAATTGATTTCGGCTGCAAAAGCTGTGAAGCACAGTAAACTGAAGTCTGCGGTAGTGAATCCTTCCTCAAGAGAATCAAGCAGCCCCCCAGCTTCCTTGGATACAAAAATGAGATTAGATGCTCTTATGAAACCTGCTGCCGCTTCAATAAGAACCATGGAGTTTTATCCACCCATGTATCCTCAGGAAGAACTGCCGCGGAAATGCGCATTACACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006950 GO:0006952 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009791 GO:0009889 GO:0009893 GO:0009909 GO:0009911 GO:0009987 GO:0010228 GO:0010468 GO:0010556 GO:0010604 GO:0010638 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030154 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031326 GO:0031399 GO:0031401 GO:0031440 GO:0031935 GO:0031937 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0033043 GO:0033044 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043954 GO:0044030 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048468 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050684 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051052 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051276 GO:0051570 GO:0051574 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060968 GO:0061085 GO:0061087 GO:0061458 GO:0065007 GO:0070827 GO:0070828 GO:0070829 GO:0071840 GO:0080090 GO:0090436 GO:0097159 GO:0098542 GO:0099402 GO:0140110 GO:1900109 GO:1900111 GO:1900363 GO:1901363 GO:1902275 GO:1903311 GO:1903506 GO:1905269 GO:2000024 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNMT1-RFD

Protein Analysis

438

Amino Acids

50.03

Weight (kDa)

8.68

Isoelectric Point (pI)

59.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DNMT1-RFD PF12047 13 - 136 2.8e-09 Cytosine specific DNA methyltransferase replication foci domain
PHD_NSD PF22908 264 - 329 1.2e-18 Histone-lysine N-methyltransferase NSD-like, PHD zinc finger
PHDvar_NSD PF23004 348 - 400 4.4e-06 Histone-lysine N-methyltransferase NSD-like, variant PHD zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000343)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48090 AT5G48090 AT5G48090 AT5G55390 AT5G55390 AT5G55390
fragaria_vesca FvH4_3g23690 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160
malus_domestica MD03G1191000.v1.1 MD11G1207800.v1.1 MD11G1208000.v1.1
prunus_persica Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227600_v2.0.a1 Prupe.4G227700_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1
pyrus_communis pycom01g03400 pycom03g14420 pycom11g18100 pycom11g18140 pycom11g18150 pycom11g18160
rosa_chinensis RchiOBHm_Chr2g0145981 RchiOBHm_Chr4g0405241 RchiOBHm_Chr4g0405271 RchiOBHm_Chr5g0016201 RchiOBHm_Chr5g0041831 RchiOBHm_Chr5g0041871 RchiOBHm_Chr5g0041881 RchiOBHm_Chr5g0059241
rosa_laevigata RLG00000002117 RLG00000008861 RLG00000008862 RLG00000011000 RLG00000033216 RLG00000034097 RLG00000034101
rosa_multiflora Rmu_sc0000161.1_g000001 Rmu_sc0000861.1_g000040 Rmu_sc0007522.1_g000003 Rmu_sc0009443.1_g000015 Rmu_sc0022129.1_g000001 Rmu_sc0042315.1_g000001
rosa_roxburghii Rroxscaffold_1G00038660 Rroxscaffold_1G00038690 Rroxscaffold_5G00349560 Rroxscaffold_5G00349610 Rroxscaffold_6G00388370 Rroxscaffold_7G00188740
rosa_rugosa Rorug03G0199700 Rorug04G0055400 Rorug04G0055500 Rorug04G0055900 Rorug04G0056000 Rorug04G0056100 Rorug04G0056100 Rorug04G0056200 Rorug05G0195600 Rorug05G0195700 Rorug05G0195800 Rorug05G0195900 Rorug05G0196800 Rorug05G0385000
rosa_samantha Rh4AG129900 Rh4AG130100 Rh4BG124200 Rh4BG124400 Rh4BG124500 Rh4CG137200 Rh4CG137300 Rh4DG123500 Rh4DG123700 Rh5AG280800 Rh5AG281400 Rh5BG286700 Rh5BG287000 Rh5BG397800 Rh5CG318100 Rh5CG318600 Rh5CG421600 Rh5DG132300 Rh5DG132400 Rh5DG295400 Rh5DG295700 Rh7BG475300
rosa_wichuraiana Rw0G001330 Rw0G005730 Rw4G008670 Rw4G010510 Rw4G010540 Rw5G026450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1303
Acc36I ACCTGC 1 cut(s) 1237
AccII CGCG 1 cut(s) 1294
AciI CCGC 5 cut(s) 429, 1145, 1236, 1292, 1294
AclWI GGATC 1 cut(s) 294
AcoI YGGCCR 1 cut(s) 42
AcsI RAATTY 4 cut(s) 791, 892, 920, 1021
AcuI CTGAAG 1 cut(s) 1157
AfiI CCNNNNNNNGG 3 cut(s) 90, 428, 1056
AflIII ACRYGT 1 cut(s) 524
AgsI TTSAA 3 cut(s) 77, 158, 1242
AjnI CCWGG 2 cut(s) 583, 720
AluBI AGCT 5 cut(s) 20, 698, 1045, 1118, 1187
AluI AGCT 5 cut(s) 20, 698, 1045, 1118, 1187
Alw26I GTCTC 1 cut(s) 461
AlwI GGATC 1 cut(s) 294
Ama87I CYCGRG 1 cut(s) 282
AoxI GGCC 1 cut(s) 42
ApeKI GCWGC 7 cut(s) 543, 566, 821, 950, 1109, 1176, 1232
ApoI RAATTY 4 cut(s) 791, 892, 920, 1021
ArsI GACNNNNNNTTYG 4 cut(s) 374, 406, 641, 673
AseI ATTAAT 1 cut(s) 12
Asp700I GAANNNNTTC 1 cut(s) 21
AspLEI GCGC 1 cut(s) 1304
AspS9I GGNCC 3 cut(s) 580, 781, 910
AsuHPI GGTGA 2 cut(s) 200, 260
AvaI CYCGRG 1 cut(s) 282
AvaII GGWCC 3 cut(s) 580, 781, 910
AxyI CCTNAGG 2 cut(s) 218, 1278
BaeI ACNNNNGTAYC 2 cut(s) 1256, 1289
BalI TGGCCA 1 cut(s) 44
BanII GRGCYC 1 cut(s) 84
BbsI GAAGAC 2 cut(s) 397, 687
BbvCI CCTCAGC 1 cut(s) 399
BbvI GCAGC 7 cut(s) 530, 553, 808, 937, 1096, 1188, 1219
BccI CCATC 1 cut(s) 239
BciT130I CCWGG 2 cut(s) 585, 722
BciVI GTATCC 2 cut(s) 1189, 1284
BcoDI GTCTC 1 cut(s) 461
BfuAI ACCTGC 1 cut(s) 1237
BfuI GTATCC 2 cut(s) 1189, 1284
BisI GCNGC 9 cut(s) 544, 567, 822, 951, 1110, 1177, 1233, 1236, 1292
BlsI GCNGC 9 cut(s) 545, 568, 823, 952, 1111, 1178, 1234, 1237, 1293
Bme1390I CCNGG 2 cut(s) 585, 722
Bme18I GGWCC 3 cut(s) 580, 781, 910
BmeT110I CYCGRG 1 cut(s) 282
BmgT120I GGNCC 3 cut(s) 580, 781, 910
BmiI GGNNCC 4 cut(s) 95, 376, 582, 782
BmrFI CCNGG 2 cut(s) 585, 722
BmsI GCATC 5 cut(s) 25, 203, 286, 355, 1204
BpiI GAAGAC 2 cut(s) 397, 687
BpmI CTGGAG 1 cut(s) 492
Bpu10I CCTNAGC 1 cut(s) 399
BpuEI CTTGAG 2 cut(s) 512, 1147
BsaBI GATNNNNATC 3 cut(s) 300, 865, 994
BsaJI CCNNGG 6 cut(s) 422, 583, 644, 1191, 1251, 1292
Bsc4I CCNNNNNNNGG 3 cut(s) 90, 428, 1056
Bse1I ACTGG 1 cut(s) 475
Bse21I CCTNAGG 2 cut(s) 218, 1278
Bse8I GATNNNNATC 3 cut(s) 300, 865, 994
BseBI CCWGG 2 cut(s) 585, 722
BseDI CCNNGG 6 cut(s) 422, 583, 644, 1191, 1251, 1292
BseGI GGATG 5 cut(s) 40, 250, 442, 620, 679
BseJI GATNNNNATC 3 cut(s) 300, 865, 994
BseLI CCNNNNNNNGG 3 cut(s) 90, 428, 1056
BseMII CTCAG 5 cut(s) 390, 816, 945, 1065, 1292
BseNI ACTGG 1 cut(s) 475
BseRI GAGGAG 1 cut(s) 367
BseXI GCAGC 7 cut(s) 530, 553, 808, 937, 1096, 1188, 1219
BseYI CCCAGC 2 cut(s) 508, 1183
BsgI GTGCAG 1 cut(s) 397
Bsh1236I CGCG 1 cut(s) 1294
Bsh1285I CGRYCG 1 cut(s) 137
BshFI GGCC 1 cut(s) 44
BsiEI CGRYCG 1 cut(s) 137
BsiHKCI CYCGRG 1 cut(s) 282
BslFI GGGAC 4 cut(s) 662, 794, 859, 988
BslI CCNNNNNNNGG 3 cut(s) 90, 428, 1056
BsmAI GTCTC 1 cut(s) 461
BsmFI GGGAC 4 cut(s) 662, 794, 859, 988
BsnI GGCC 1 cut(s) 44
BsoBI CYCGRG 1 cut(s) 282
Bsp1286I GDGCHC 1 cut(s) 84
Bsp143I GATC 2 cut(s) 134, 286
Bsp19I CCATGG 1 cut(s) 1251
BspACI CCGC 5 cut(s) 429, 1145, 1236, 1292, 1294
BspANI GGCC 1 cut(s) 44
BspCNI CTCAG 5 cut(s) 391, 817, 946, 1064, 1291
BspFNI CGCG 1 cut(s) 1294
BspLI GGNNCC 4 cut(s) 95, 376, 582, 782
BspMI ACCTGC 1 cut(s) 1237
BspPI GGATC 1 cut(s) 294
BsrI ACTGG 1 cut(s) 475
BssECI CCNNGG 6 cut(s) 422, 583, 644, 1191, 1251, 1292
BssMI GATC 2 cut(s) 134, 286
BssT1I CCWWGG 3 cut(s) 422, 1191, 1251
Bst2UI CCWGG 2 cut(s) 585, 722
Bst4CI ACNGT 4 cut(s) 185, 238, 632, 1130
Bst6I CTCTTC 3 cut(s) 78, 848, 977
BstC8I GCNNGC 1 cut(s) 641
BstDEI CTNAG 7 cut(s) 218, 399, 764, 825, 954, 1051, 1278
BstDSI CCRYGG 3 cut(s) 644, 1251, 1292
BstEII GGTNACC 1 cut(s) 188
BstF5I GGATG 5 cut(s) 40, 250, 442, 620, 679
BstFNI CGCG 1 cut(s) 1294
BstHHI GCGC 1 cut(s) 1304
BstKTI GATC 2 cut(s) 137, 289
BstMAI GTCTC 1 cut(s) 461
BstMBI GATC 2 cut(s) 134, 286
BstMCI CGRYCG 1 cut(s) 137
BstMWI GCNNNNNNNGC 1 cut(s) 1115
BstNI CCWGG 2 cut(s) 585, 722
BstNSI RCATGY 1 cut(s) 528
BstPI GGTNACC 1 cut(s) 188
BstSCI CCNGG 2 cut(s) 583, 720
BstUI CGCG 1 cut(s) 1294
BstV1I GCAGC 7 cut(s) 530, 553, 808, 937, 1096, 1188, 1219
BstV2I GAAGAC 2 cut(s) 397, 687
Bsu36I CCTNAGG 2 cut(s) 218, 1278
BsuI GTATCC 2 cut(s) 1189, 1284
BsuRI GGCC 1 cut(s) 44
BtgI CCRYGG 3 cut(s) 644, 1251, 1292
BtgZI GCGATG 1 cut(s) 226
BtsCI GGATG 5 cut(s) 40, 250, 442, 620, 679
BtsIMutI CAGTG 3 cut(s) 141, 356, 892
BveI ACCTGC 1 cut(s) 1237
Cac8I GCNNGC 1 cut(s) 641
CfoI GCGC 1 cut(s) 1304
Cfr13I GGNCC 3 cut(s) 580, 781, 910
Cfr42I CCGCGG 1 cut(s) 1295
CsiI ACCWGGT 1 cut(s) 720
CviAII CATG 8 cut(s) 230, 525, 785, 878, 914, 1007, 1252, 1270
DdeI CTNAG 7 cut(s) 218, 399, 764, 825, 954, 1051, 1278
DpnI GATC 2 cut(s) 136, 288
DpnII GATC 2 cut(s) 134, 286
EaeI YGGCCR 1 cut(s) 42
Eam1104I CTCTTC 3 cut(s) 78, 848, 977
EarI CTCTTC 3 cut(s) 78, 848, 977
Eco130I CCWWGG 3 cut(s) 422, 1191, 1251
Eco24I GRGCYC 1 cut(s) 84
Eco32I GATATC 1 cut(s) 112
Eco47I GGWCC 3 cut(s) 580, 781, 910
Eco57I CTGAAG 1 cut(s) 1157
Eco81I CCTNAGG 2 cut(s) 218, 1278
Eco88I CYCGRG 1 cut(s) 282
Eco91I GGTNACC 1 cut(s) 188
EcoO109I RGGNCCY 1 cut(s) 580
EcoO65I GGTNACC 1 cut(s) 188
EcoRI GAATTC 2 cut(s) 892, 1021
EcoRII CCWGG 2 cut(s) 583, 720
EcoRV GATATC 1 cut(s) 112
EcoT14I CCWWGG 3 cut(s) 422, 1191, 1251
EcoT22I ATGCAT 1 cut(s) 301
EcoT38I GRGCYC 1 cut(s) 84
ErhI CCWWGG 3 cut(s) 422, 1191, 1251
FaeI CATG 8 cut(s) 233, 528, 788, 881, 917, 1010, 1255, 1273
FaqI GGGAC 4 cut(s) 662, 794, 859, 988
FatI CATG 8 cut(s) 229, 524, 784, 877, 913, 1006, 1251, 1269
Fnu4HI GCNGC 9 cut(s) 544, 567, 822, 951, 1110, 1177, 1233, 1236, 1292
FokI GGATG 5 cut(s) 47, 257, 429, 607, 686
FriOI GRGCYC 1 cut(s) 84
Fsp4HI GCNGC 9 cut(s) 544, 567, 822, 951, 1110, 1177, 1233, 1236, 1292
FspAI RTGCGCAY 1 cut(s) 1303
FspI TGCGCA 1 cut(s) 1303
GlaI GCGC 1 cut(s) 1303
GluI GCNGC 9 cut(s) 544, 567, 822, 951, 1110, 1177, 1233, 1236, 1292
GsaI CCCAGC 2 cut(s) 512, 1187
GsuI CTGGAG 1 cut(s) 492
HaeIII GGCC 1 cut(s) 44
HhaI GCGC 1 cut(s) 1304
Hin1II CATG 8 cut(s) 233, 528, 788, 881, 917, 1010, 1255, 1273
Hin6I GCGC 1 cut(s) 1302
HinP1I GCGC 1 cut(s) 1302
HincII GTYRAC 3 cut(s) 64, 335, 974
HindII GTYRAC 3 cut(s) 64, 335, 974
HindIII AAGCTT 1 cut(s) 1043
HinfI GANTC 7 cut(s) 266, 515, 872, 1001, 1093, 1153, 1169
HphI GGTGA 2 cut(s) 200, 260
Hpy166II GTNNAC 5 cut(s) 64, 141, 335, 974, 1133
Hpy188I TCNGA 7 cut(s) 27, 103, 382, 481, 871, 1000, 1054
Hpy188III TCNNGA 6 cut(s) 77, 284, 290, 845, 1164, 1280
Hpy8I GTNNAC 5 cut(s) 64, 141, 335, 974, 1133
HpyAV CCTTC 7 cut(s) 22, 200, 698, 771, 901, 1049, 1167
HpyCH4III ACNGT 4 cut(s) 185, 238, 632, 1130
HpyF10VI GCNNNNNNNGC 1 cut(s) 1115
HpyF3I CTNAG 7 cut(s) 218, 399, 764, 825, 954, 1051, 1278
Hsp92II CATG 8 cut(s) 233, 528, 788, 881, 917, 1010, 1255, 1273
HspAI GCGC 1 cut(s) 1302
KspI CCGCGG 1 cut(s) 1295
Kzo9I GATC 2 cut(s) 134, 286
LmnI GCTCC 2 cut(s) 380, 1084
Lsp1109I GCAGC 7 cut(s) 530, 553, 808, 937, 1096, 1188, 1219
LweI GCATC 5 cut(s) 25, 203, 286, 355, 1204
MabI ACCWGGT 1 cut(s) 720
MaeIII GTNAC 1 cut(s) 188
MalI GATC 2 cut(s) 136, 288
MboI GATC 2 cut(s) 134, 286
MfeI CAATTG 1 cut(s) 1097
MhlI GDGCHC 1 cut(s) 84
MlsI TGGCCA 1 cut(s) 44
MluNI TGGCCA 1 cut(s) 44
MlyI GAGTC 3 cut(s) 881, 1010, 1102
Mox20I TGGCCA 1 cut(s) 44
Mph1103I ATGCAT 1 cut(s) 301
MroXI GAANNNNTTC 1 cut(s) 21
MscI TGGCCA 1 cut(s) 44
MseI TTAA 9 cut(s) 8, 12, 119, 576, 756, 789, 863, 918, 992
Msp20I TGGCCA 1 cut(s) 44
MspA1I CMGCKG 1 cut(s) 1294
MspR9I CCNGG 2 cut(s) 585, 722
MunI CAATTG 1 cut(s) 1097
MvaI CCWGG 2 cut(s) 585, 722
MvnI CGCG 1 cut(s) 1294
MwoI GCNNNNNNNGC 1 cut(s) 1115
NcoI CCATGG 1 cut(s) 1251
NdeII GATC 2 cut(s) 134, 286
NlaIII CATG 8 cut(s) 233, 528, 788, 881, 917, 1010, 1255, 1273
NlaIV GGNNCC 4 cut(s) 95, 376, 582, 782
NmuCI GTSAC 1 cut(s) 188
NsbI TGCGCA 1 cut(s) 1303
NsiI ATGCAT 1 cut(s) 301
NspI RCATGY 1 cut(s) 528
PacI TTAATTAA 1 cut(s) 12
PciI ACATGT 1 cut(s) 524
PdmI GAANNNNTTC 1 cut(s) 21
PfeI GAWTC 4 cut(s) 266, 515, 1153, 1169
PkrI GCNGC 9 cut(s) 545, 568, 823, 952, 1111, 1178, 1234, 1237, 1293
Ple19I CGATCG 1 cut(s) 137
PleI GAGTC 3 cut(s) 880, 1009, 1101
PpsI GAGTC 3 cut(s) 880, 1009, 1101
PpuMI RGGWCCY 1 cut(s) 580
PscI ACATGT 1 cut(s) 524
PshBI ATTAAT 1 cut(s) 12
Psp5II RGGWCCY 1 cut(s) 580
Psp6I CCWGG 2 cut(s) 583, 720
PspEI GGTNACC 1 cut(s) 188
PspFI CCCAGC 2 cut(s) 508, 1183
PspGI CCWGG 2 cut(s) 583, 720
PspN4I GGNNCC 4 cut(s) 95, 376, 582, 782
PspPI GGNCC 3 cut(s) 580, 781, 910
PspPPI RGGWCCY 1 cut(s) 580
PvuI CGATCG 1 cut(s) 137
SacII CCGCGG 1 cut(s) 1295
SaqAI TTAA 9 cut(s) 8, 12, 119, 576, 756, 789, 863, 918, 992
SatI GCNGC 9 cut(s) 544, 567, 822, 951, 1110, 1177, 1233, 1236, 1292
Sau3AI GATC 2 cut(s) 134, 286
Sau96I GGNCC 3 cut(s) 580, 781, 910
SchI GAGTC 3 cut(s) 881, 1010, 1102
ScrFI CCNGG 2 cut(s) 585, 722
SduI GDGCHC 1 cut(s) 84
SexAI ACCWGGT 1 cut(s) 720
SfaNI GCATC 5 cut(s) 25, 203, 286, 355, 1204
Sfr303I CCGCGG 1 cut(s) 1295
SgrBI CCGCGG 1 cut(s) 1295
SinI GGWCC 3 cut(s) 580, 781, 910
SmlI CTYRAG 2 cut(s) 491, 1162
SmoI CTYRAG 2 cut(s) 491, 1162
SsiI CCGC 5 cut(s) 429, 1145, 1236, 1292, 1294
SspI AATATT 1 cut(s) 389
StyD4I CCNGG 2 cut(s) 583, 720
StyI CCWWGG 3 cut(s) 422, 1191, 1251
TaaI ACNGT 4 cut(s) 185, 238, 632, 1130
TaqI TCGA 2 cut(s) 304, 1014
TauI GCSGC 2 cut(s) 1238, 1294
TfiI GAWTC 4 cut(s) 266, 515, 1153, 1169
Tru1I TTAA 9 cut(s) 8, 12, 119, 576, 756, 789, 863, 918, 992
Tru9I TTAA 9 cut(s) 8, 12, 119, 576, 756, 789, 863, 918, 992
TscAI CASTG 3 cut(s) 148, 356, 892
TseFI GTSAC 1 cut(s) 188
TseI GCWGC 7 cut(s) 543, 566, 821, 950, 1109, 1176, 1232
Tsp45I GTSAC 1 cut(s) 188
TspDTI ATGAA 6 cut(s) 30, 218, 498, 644, 693, 1238
TspRI CASTG 3 cut(s) 148, 356, 892
VpaK11BI GGWCC 3 cut(s) 580, 781, 910
VspI ATTAAT 1 cut(s) 12
XapI RAATTY 4 cut(s) 791, 892, 920, 1021
XceI RCATGY 1 cut(s) 528
XmnI GAANNNNTTC 1 cut(s) 21
Zsp2I ATGCAT 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.