RLG00000033216

metal ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000343
Physical Location & Seq
Reverse (-)
24540341 .. 24541351
1011 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033216

Sequence Viewer

Length: 573 bp
ATGAGGCAGAGCCTCTACCAGTTACGAATTACTATTTTGAAGATGACAAGAATGAACCTATTTCGTTTCATGTTTTGCCAATTGAATGCAGCAAGGATAAGACAGAATGTGAAGAAAGAACTCATATATTTGCGCGACATTGCCGATAATGGGCTTCAGATCATACATAGAGCTGTTATAGCATGGAAATTTGACCTTTTTAGTGTGAAGCCAGTGATATCAGTGCTATCCAGGAAAAACAAGTGGATTGTGCTTCAGAGGCCGAGGAAGAGCTTTGAGAAGATAATAAGGCCAATCTTGGTAACGCTCCACTGTCTTAGTTATGTGATTAGAAATCCAGAAACGTCTGCCAAATCTCTATGGGAGTACTTAGCTAATGTTTATAGTTTGTATGAGGTCAGGCCTTCTCAAAATGATCTTGCGGAGCATATGCCTTTAATTAGGGAGGCTCTTAAATGGGAGGATTCTTTGGCAAAGTTCAAGGGCATGAAGCAGATCTGTATATCAACAGCATATTTACCCACACTGGGACAAGATGGAAAAGAGATTGGTATTTGTGGGAATCTGATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006950 GO:0006952 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009791 GO:0009889 GO:0009893 GO:0009909 GO:0009911 GO:0009987 GO:0010228 GO:0010468 GO:0010556 GO:0010604 GO:0010638 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030154 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031326 GO:0031399 GO:0031401 GO:0031440 GO:0031935 GO:0031937 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0033043 GO:0033044 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043954 GO:0044030 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048468 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050684 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051052 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051276 GO:0051570 GO:0051574 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060968 GO:0061085 GO:0061087 GO:0061458 GO:0065007 GO:0070827 GO:0070828 GO:0070829 GO:0071840 GO:0080090 GO:0090436 GO:0097159 GO:0098542 GO:0099402 GO:0140110 GO:1900109 GO:1900111 GO:1900363 GO:1901363 GO:1902275 GO:1903311 GO:1903506 GO:1905269 GO:2000024 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNMT1-RFD

Protein Analysis

191

Amino Acids

22.29

Weight (kDa)

9.94

Isoelectric Point (pI)

36.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DNMT1-RFD PF12047 45 - 127 3.7e-06 Cytosine specific DNA methyltransferase replication foci domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000343)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48090 AT5G48090 AT5G48090 AT5G55390 AT5G55390 AT5G55390
fragaria_vesca FvH4_3g23690 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160
malus_domestica MD03G1191000.v1.1 MD11G1207800.v1.1 MD11G1208000.v1.1
prunus_persica Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227600_v2.0.a1 Prupe.4G227700_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1
pyrus_communis pycom01g03400 pycom03g14420 pycom11g18100 pycom11g18140 pycom11g18150 pycom11g18160
rosa_chinensis RchiOBHm_Chr2g0145981 RchiOBHm_Chr4g0405241 RchiOBHm_Chr4g0405271 RchiOBHm_Chr5g0016201 RchiOBHm_Chr5g0041831 RchiOBHm_Chr5g0041871 RchiOBHm_Chr5g0041881 RchiOBHm_Chr5g0059241
rosa_laevigata RLG00000002117 RLG00000008861 RLG00000008862 RLG00000011000 RLG00000033216 RLG00000034097 RLG00000034101
rosa_multiflora Rmu_sc0000161.1_g000001 Rmu_sc0000861.1_g000040 Rmu_sc0007522.1_g000003 Rmu_sc0009443.1_g000015 Rmu_sc0022129.1_g000001 Rmu_sc0042315.1_g000001
rosa_roxburghii Rroxscaffold_1G00038660 Rroxscaffold_1G00038690 Rroxscaffold_5G00349560 Rroxscaffold_5G00349610 Rroxscaffold_6G00388370 Rroxscaffold_7G00188740
rosa_rugosa Rorug03G0199700 Rorug04G0055400 Rorug04G0055500 Rorug04G0055900 Rorug04G0056000 Rorug04G0056100 Rorug04G0056100 Rorug04G0056200 Rorug05G0195600 Rorug05G0195700 Rorug05G0195800 Rorug05G0195900 Rorug05G0196800 Rorug05G0385000
rosa_samantha Rh4AG129900 Rh4AG130100 Rh4BG124200 Rh4BG124400 Rh4BG124500 Rh4CG137200 Rh4CG137300 Rh4DG123500 Rh4DG123700 Rh5AG280800 Rh5AG281400 Rh5BG286700 Rh5BG287000 Rh5BG397800 Rh5CG318100 Rh5CG318600 Rh5CG421600 Rh5DG132300 Rh5DG132400 Rh5DG295400 Rh5DG295700 Rh7BG475300
rosa_wichuraiana Rw0G001330 Rw0G005730 Rw4G008670 Rw4G010510 Rw4G010540 Rw5G026450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 135
AciI CCGC 1 cut(s) 422
AcsI RAATTY 1 cut(s) 188
AcuI CTGAAG 2 cut(s) 140, 239
AfaI GTAC 1 cut(s) 368
AfiI CCNNNNNNNGG 2 cut(s) 150, 527
AgsI TTSAA 3 cut(s) 40, 85, 481
AjnI CCWGG 1 cut(s) 230
AluBI AGCT 3 cut(s) 173, 273, 374
AluI AGCT 3 cut(s) 173, 273, 374
AoxI GGCC 3 cut(s) 260, 290, 401
ApeKI GCWGC 1 cut(s) 89
ApoI RAATTY 1 cut(s) 188
AspLEI GCGC 1 cut(s) 135
BbvI GCAGC 1 cut(s) 101
BccI CCATC 1 cut(s) 530
BciT130I CCWGG 1 cut(s) 232
BglII AGATCT 1 cut(s) 495
BisI GCNGC 1 cut(s) 90
BlsI GCNGC 1 cut(s) 91
BmcAI AGTACT 1 cut(s) 368
Bme1390I CCNGG 1 cut(s) 232
BmrFI CCNGG 1 cut(s) 232
BmrI ACTGGG 1 cut(s) 536
BmuI ACTGGG 1 cut(s) 536
BsaJI CCNNGG 1 cut(s) 263
Bsc4I CCNNNNNNNGG 2 cut(s) 150, 527
Bse1I ACTGG 3 cut(s) 19, 212, 531
Bse3DI GCAATG 1 cut(s) 138
BseBI CCWGG 1 cut(s) 232
BseDI CCNNGG 1 cut(s) 263
BseLI CCNNNNNNNGG 2 cut(s) 150, 527
BseMI GCAATG 1 cut(s) 138
BseNI ACTGG 3 cut(s) 19, 212, 531
BseXI GCAGC 1 cut(s) 101
Bsh1236I CGCG 1 cut(s) 135
BshFI GGCC 3 cut(s) 262, 292, 403
BslFI GGGAC 1 cut(s) 543
BslI CCNNNNNNNGG 2 cut(s) 150, 527
BsmFI GGGAC 1 cut(s) 543
BsmI GAATGC 1 cut(s) 91
BsnI GGCC 3 cut(s) 262, 292, 403
Bsp143I GATC 3 cut(s) 159, 415, 495
BspACI CCGC 1 cut(s) 422
BspANI GGCC 3 cut(s) 262, 292, 403
BspFNI CGCG 1 cut(s) 135
BspQI GCTCTTC 1 cut(s) 263
BsrDI GCAATG 1 cut(s) 138
BsrI ACTGG 3 cut(s) 19, 212, 531
BssECI CCNNGG 1 cut(s) 263
BssMI GATC 3 cut(s) 159, 415, 495
Bst2UI CCWGG 1 cut(s) 232
Bst4CI ACNGT 1 cut(s) 314
Bst6I CTCTTC 1 cut(s) 263
BstDEI CTNAG 2 cut(s) 317, 370
BstFNI CGCG 1 cut(s) 135
BstHHI GCGC 1 cut(s) 135
BstKTI GATC 3 cut(s) 162, 418, 498
BstMBI GATC 3 cut(s) 159, 415, 495
BstMWI GCNNNNNNNGC 2 cut(s) 179, 259
BstNI CCWGG 1 cut(s) 232
BstSCI CCNGG 1 cut(s) 230
BstUI CGCG 1 cut(s) 135
BstV1I GCAGC 1 cut(s) 101
BstX2I RGATCY 1 cut(s) 495
BstYI RGATCY 1 cut(s) 495
BsuRI GGCC 3 cut(s) 262, 292, 403
BtsIMutI CAGTG 4 cut(s) 219, 228, 310, 524
CfoI GCGC 1 cut(s) 135
Csp6I GTAC 1 cut(s) 367
CviAII CATG 3 cut(s) 70, 183, 487
CviQI GTAC 1 cut(s) 367
DdeI CTNAG 2 cut(s) 317, 370
DpnI GATC 3 cut(s) 161, 417, 497
DpnII GATC 3 cut(s) 159, 415, 495
Eam1104I CTCTTC 1 cut(s) 263
EarI CTCTTC 1 cut(s) 263
Eco147I AGGCCT 1 cut(s) 403
Eco32I GATATC 1 cut(s) 219
Eco57I CTGAAG 2 cut(s) 140, 239
EcoRII CCWGG 1 cut(s) 230
EcoRV GATATC 1 cut(s) 219
FaeI CATG 3 cut(s) 73, 186, 490
FaqI GGGAC 1 cut(s) 543
FatI CATG 3 cut(s) 69, 182, 486
FauNDI CATATG 1 cut(s) 429
Fnu4HI GCNGC 1 cut(s) 90
Fsp4HI GCNGC 1 cut(s) 90
GlaI GCGC 1 cut(s) 134
GluI GCNGC 1 cut(s) 90
HaeIII GGCC 3 cut(s) 262, 292, 403
HhaI GCGC 1 cut(s) 135
Hin1II CATG 3 cut(s) 73, 186, 490
Hin6I GCGC 1 cut(s) 133
HinP1I GCGC 1 cut(s) 133
HinfI GANTC 2 cut(s) 464, 562
Hpy188I TCNGA 3 cut(s) 159, 258, 567
Hpy188III TCNNGA 1 cut(s) 338
HpyAV CCTTC 1 cut(s) 414
HpyCH4III ACNGT 1 cut(s) 314
HpyCH4IV ACGT 1 cut(s) 344
HpyCH4V TGCA 1 cut(s) 89
HpyF10VI GCNNNNNNNGC 2 cut(s) 179, 259
HpyF3I CTNAG 2 cut(s) 317, 370
HpySE526I ACGT 1 cut(s) 344
Hsp92II CATG 3 cut(s) 73, 186, 490
HspAI GCGC 1 cut(s) 133
Kzo9I GATC 3 cut(s) 159, 415, 495
LguI GCTCTTC 1 cut(s) 263
LmnI GCTCC 2 cut(s) 312, 424
LpnPI CCDG 7 cut(s) 32, 217, 225, 244, 351, 385, 512
Lsp1109I GCAGC 1 cut(s) 101
MaeII ACGT 1 cut(s) 344
MaeIII GTNAC 2 cut(s) 21, 301
MalI GATC 3 cut(s) 161, 417, 497
MboI GATC 3 cut(s) 159, 415, 495
MboII GAAGA 4 cut(s) 52, 124, 280, 292
MfeI CAATTG 1 cut(s) 80
MflI RGATCY 1 cut(s) 495
MluCI AATT 4 cut(s) 27, 80, 188, 438
MnlI CCTC 6 cut(s) 23, 252, 258, 388, 439, 454
MseI TTAA 2 cut(s) 437, 453
MspR9I CCNGG 1 cut(s) 232
MunI CAATTG 1 cut(s) 80
Mva1269I GAATGC 1 cut(s) 91
MvaI CCWGG 1 cut(s) 232
MvnI CGCG 1 cut(s) 135
MwoI GCNNNNNNNGC 2 cut(s) 179, 259
NdeI CATATG 1 cut(s) 429
NdeII GATC 3 cut(s) 159, 415, 495
NlaIII CATG 3 cut(s) 73, 186, 490
NmeAIII GCCGAG 1 cut(s) 288
PceI AGGCCT 1 cut(s) 403
PciSI GCTCTTC 1 cut(s) 263
PctI GAATGC 1 cut(s) 91
PfeI GAWTC 2 cut(s) 464, 562
PfoI TCCNGGA 1 cut(s) 230
PkrI GCNGC 1 cut(s) 91
Psp6I CCWGG 1 cut(s) 230
PspGI CCWGG 1 cut(s) 230
PsuI RGATCY 1 cut(s) 495
RsaI GTAC 1 cut(s) 368
RsaNI GTAC 1 cut(s) 367
SapI GCTCTTC 1 cut(s) 263
SaqAI TTAA 2 cut(s) 437, 453
SatI GCNGC 1 cut(s) 90
Sau3AI GATC 3 cut(s) 159, 415, 495
ScaI AGTACT 1 cut(s) 368
ScrFI CCNGG 1 cut(s) 232
SetI ASST 7 cut(s) 60, 175, 198, 275, 347, 376, 399
Sse9I AATT 4 cut(s) 27, 80, 188, 438
SseBI AGGCCT 1 cut(s) 403
SsiI CCGC 1 cut(s) 422
StuI AGGCCT 1 cut(s) 403
StyD4I CCNGG 1 cut(s) 230
TaaI ACNGT 1 cut(s) 314
TaiI ACGT 1 cut(s) 347
TasI AATT 4 cut(s) 27, 80, 188, 438
TatI WGTACW 1 cut(s) 366
TfiI GAWTC 2 cut(s) 464, 562
Tru1I TTAA 2 cut(s) 437, 453
Tru9I TTAA 2 cut(s) 437, 453
TscAI CASTG 4 cut(s) 219, 228, 317, 531
TseI GCWGC 1 cut(s) 89
TspDTI ATGAA 3 cut(s) 58, 68, 503
TspRI CASTG 4 cut(s) 219, 228, 317, 531
XapI RAATTY 1 cut(s) 188
ZrmI AGTACT 1 cut(s) 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.