Rorug04G0055900

metal ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000343
Physical Location & Seq
Forward (+)
8813049 .. 8817018
3970 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0055900.1

Sequence Viewer

Length: 3441 bp
ATGTCGTCGGTTTCATCGATACCCAGCTCGAGGCAATCCTTCTCTTCTTCTTCTTCTTGTTCTTCAATAATCTCCATTATCTATCTATTTCTCATTTCGTCGGCCTTTGCCTCAAACCATGAAGCCTCTCTTCTCTTCTCTTGGCTGCATTCCTCTACTTCTTTCTCTTCTTCTTCCTTTTCGAACTGGAACATTCTCGACTCTAATCCATGTAACTGGTCCTCCATAACATGTTCTCCAAATGGTTTTGTCACGGAAATCACTATCCAGTCCATCCCTCTTGAGCTTCCAATCCCATCTAATCTTTCCTCCTTCACCTCCCTTCAAAAACTCGTCATTTCCGGCGGTAATCTCACCGGAAAAATCCCCTCCGACATCGGTGACTGCACTGAGCTACAAGTCATTGACCTAAGCTCAAACTCACTCGTGGGTTCGATCCCTTCATCCATTGGAAGACTTCAAAACCTCCAAGACTTGATTCTCAACTCAAACCAGTTCAGTGGGAAAATCCCAGTTGAGTTAAGCGACGGCATTGGCCTAAAGAAACTTGTCATTTTCGATAATCAGTTTTCCGGGAATATCCCGCCGGAGCTCGGAAAACTGGCCGGTCTTGAAGTGCTGAGAGCAGGAGGGAACAAAAACATTGGTGGGAGAATCCCTGATGAGCTTGGAGACTGCACCAACTTGACTGTTTTGGGCTTGGCTGATACTCAAGTTTCTGGTTCTTTGCCGGCCTCGTTGGGTAAGCTTAGCAAGCTTCAGACGCTGTCTATATACACCACAATGATCTCTGGTGAGATTCCTGCTGAGATAGGTAACTGTTCTGAGCTTGTGAACTTGTTTCTTTATGAAAACAGTCTATCCGGTTCGATTCCACCGGAGCTCGGTAGGCTTAAGAAGCTTGAGCAGTTGTTGTTGTGGCAGAATAGTCTTGTTGGGGTGATCCCTGAAGAGATTGGGAAATGTAGTAGCTTGAAAATGATTGATTTTTCATTAAATTCTCTGTCTGGTACTATTCCATTGTCTCTAGGAGGGCTGTCAAACCTTGAGGAGTTTATGATTAGTAACAACAATGTCACCGGTTCAATACCTTCCAGTCTTTGCAATGCAACGAATTTGATTCAGTTGCAGCTTGATACGAATCAGATCTCCGGTTTGATTCCACCGGAGATTGGGAAGTTGTCAAAGCTGACTGTGTTCTTTGCTTGGCAAAACCAGCTTGAAGGAAGCATTCCTTCATCTTTGTCTAGTTTGAGTAATCTTCAAGCTCTAGATTTGTCACACAATTCACTCACTGGTAGCATACCTTCTGGCTTGTTTCAGCTGCAAAACCTCACAAAGATTCTCTTGATTTCTAATGATATTTCGGGCTCAATCCCACCCGAAATTGGTAACTGCAGCTCTCTTGTAAGGCTGAGGCTTGGAAATAACAGGATTACTGGTGGGATTCCTAGAGGCATTGGAAATCTCAGGAGCTTAAATTTTCTTGATCTTTCAGGGAATCGACTTTCTGGGTCAATTCCTGATGAGATTGGGAGTTCCACAGAGCTACAAATGATAGACCTCAGCAACAATACTTTAGAGGGTCCCCTGCCTAATTCATTGTCATCACTCTCAGGACTTCAAGTCTTGGATGTCTCCATCAATCAATTTTCGGGCCAGATACCAGCAAGCTTGGCTCGTCTTGTTATGTTGAACACGCTTATTCTGAGCAGGAACTCATTCTCTGGATTAATACCAGCATCACTCGGCCTATGTTCGAGTCTGCAATTGCTTGATCTTAGCAGCAACAAGCTCACTGGCAACATTCCTGTGGAGCTTGGCAAAATTGAATCCCTTGAAATTACTCTAAATTTGAGCTGCAATGGACTCTCTGGATCAATCCCACCTCAAATATCAGCACTCAACAAGCTTTTCGTACTAGACCTTTCGCATAACCAGCTTGAAGGGGATTTGAGTCCACTCTCTTCTGGCCTTAACACTCTTGATTCTCTAAATGTGTCTTACAATAACCTTGTTGGCTATCTTCCAGACAACAAGCTTTTCAGACAACTGTCTCCAATGGATTTAGCCGGAAATGAAGGCCTTTGTTCTTCAAACCGGGACTCGTGTTTCTTGAGTGATGTTGGCAGGTCAGGACTATCAAGAAACCAAAATGACGTAAGGCGGTCAAGGAGGCTTAAGCTGGCAATTGCATTGCTGATCACCTTGACAGTTGCAATGGTTGTTATGGGGATAATTGCAGTGATTCAAGCACGAAGGACTATTAGGGATGATGATGATTCAGAGTTGGGGAGCTCATGGGCATGGCAATTCACTCCATTCCAGAAGCTAAATTTCTCGGTTGAGCAAGTGCTTAAGAGCCTAGTGGATGCCAATGTGATTGGAAAAGGGTGTTCTGGGGTTGTTTATCGTGCTGATATGGACAATGGTGAAGTCATTGCAGTGAAGAAGCTCTGGCCAACTACAGTTGCTGCAGACAATGGATGTTGCAATGATGAAAAATGTGGAGTTCGTGATACGTTCTCAGCAGAGGTCAAAACACTTGGCTCAATCCGTCACAAGAACATTGTTAGGTTCTTGGGATGTTGCTGGAATAGGCACACAAGGCTGCTCATGTATGACTATATGCCTAATGGAAGCTTGGGCAGTATTCTCCATGAGAGGACAGGACATGCCTTTGAGTGGGAGCTTAGGTACCGAGTTTTGTTGGGTGCTGCTCAAGGCATTGCCTACTTGCACCATGATTGTGTTCCTCCAATTGTTCACAGAGATATCAAAGCCAACAACATCCTCATTGGCCTAGAGTTTGAGGCTTACATTGCTGATTTTGGTCTTGCAAAACTTGTTGATGAGGGAAATTTCGCTCGATCATCTAACACAATTGCTGGTTCATATGGCTACATTGCTCCTGAATATGGATATATGATGAAGATTACAGAGAAGAGTGATGTTTATAGCTATGGTGTAGTTGTATTGGAAGTTTTAACAGGGAAGCAACCAATAGATCCAACAATACCAGATGGGCTACATGTAGTGGATTGGGTGAGACAGAAGAGAGGAAATGTTGAAGTGCTTGACCCAATCCTACTATCAAGACCAGAATCAGAAATAGAGGAAATGATGCAAGCATTAGGCATAGCCCTGTTATGTGTAAACTCCTCTCCAGTAGAAAGGCCAACAATGAAAGATGTAGCTGCAATGCTCAAGGAAATCAGGCATGAAAGGGAAGAGTATGCTAAGGTCGATGTGCTTCTCAAAGGGTCTCCGGCGAATGATGCTGCTCGAGAAAATAAGAACTCTGCTGGAGTTTTGGAAACATCATCATCATCGGCAGCAGCGGCAAAAAGCTTGTATGCTAAAAGCAATAACACAAGCTTTTCTGCATCCACTCTTCTTTACTCATCTTCTTCCTCTAGTGCAAAAATGGGTTTCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006950 GO:0006952 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009791 GO:0009889 GO:0009893 GO:0009909 GO:0009911 GO:0009987 GO:0010228 GO:0010468 GO:0010556 GO:0010604 GO:0010638 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030154 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031326 GO:0031399 GO:0031401 GO:0031440 GO:0031935 GO:0031937 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0033043 GO:0033044 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043954 GO:0044030 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048468 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050684 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051052 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051276 GO:0051570 GO:0051574 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060968 GO:0061085 GO:0061087 GO:0061458 GO:0065007 GO:0070827 GO:0070828 GO:0070829 GO:0071840 GO:0080090 GO:0090436 GO:0097159 GO:0098542 GO:0099402 GO:0140110 GO:1900109 GO:1900111 GO:1900363 GO:1901363 GO:1902275 GO:1903311 GO:1903506 GO:1905269 GO:2000024 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNMT1-RFD

Protein Analysis

1146

Amino Acids

123.23

Weight (kDa)

5.35

Isoelectric Point (pI)

39.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 104 - 209 9.8e-07 Leucine-rich repeat region
LRR_8 PF13855 107 - 166 4.6e-06 Leucine rich repeat
LRR_14 PF23598 183 - 308 6.5e-11 Leucine-rich repeat region
LRR_14 PF23598 312 - 472 3.4e-09 Leucine-rich repeat region
LRR_14 PF23598 433 - 583 5.1e-09 Leucine-rich repeat region
LRR_14 PF23598 497 - 614 9e-06 Leucine-rich repeat region
PK_Tyr_Ser-Thr PF07714 793 - 1068 6.3e-39 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 793 - 1066 4.7e-38 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000343)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48090 AT5G48090 AT5G48090 AT5G55390 AT5G55390 AT5G55390
fragaria_vesca FvH4_3g23690 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160
malus_domestica MD03G1191000.v1.1 MD11G1207800.v1.1 MD11G1208000.v1.1
prunus_persica Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227600_v2.0.a1 Prupe.4G227700_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1
pyrus_communis pycom01g03400 pycom03g14420 pycom11g18100 pycom11g18140 pycom11g18150 pycom11g18160
rosa_chinensis RchiOBHm_Chr2g0145981 RchiOBHm_Chr4g0405241 RchiOBHm_Chr4g0405271 RchiOBHm_Chr5g0016201 RchiOBHm_Chr5g0041831 RchiOBHm_Chr5g0041871 RchiOBHm_Chr5g0041881 RchiOBHm_Chr5g0059241
rosa_laevigata RLG00000002117 RLG00000008861 RLG00000008862 RLG00000011000 RLG00000033216 RLG00000034097 RLG00000034101
rosa_multiflora Rmu_sc0000161.1_g000001 Rmu_sc0000861.1_g000040 Rmu_sc0007522.1_g000003 Rmu_sc0009443.1_g000015 Rmu_sc0022129.1_g000001 Rmu_sc0042315.1_g000001
rosa_roxburghii Rroxscaffold_1G00038660 Rroxscaffold_1G00038690 Rroxscaffold_5G00349560 Rroxscaffold_5G00349610 Rroxscaffold_6G00388370 Rroxscaffold_7G00188740
rosa_rugosa Rorug03G0199700 Rorug04G0055400 Rorug04G0055500 Rorug04G0055900 Rorug04G0056000 Rorug04G0056100 Rorug04G0056100 Rorug04G0056200 Rorug05G0195600 Rorug05G0195700 Rorug05G0195800 Rorug05G0195900 Rorug05G0196800 Rorug05G0385000
rosa_samantha Rh4AG129900 Rh4AG130100 Rh4BG124200 Rh4BG124400 Rh4BG124500 Rh4CG137200 Rh4CG137300 Rh4DG123500 Rh4DG123700 Rh5AG280800 Rh5AG281400 Rh5BG286700 Rh5BG287000 Rh5BG397800 Rh5CG318100 Rh5CG318600 Rh5CG421600 Rh5DG132300 Rh5DG132400 Rh5DG295400 Rh5DG295700 Rh7BG475300
rosa_wichuraiana Rw0G001330 Rw0G005730 Rw4G008670 Rw4G010510 Rw4G010540 Rw5G026450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 2121
Acc65I GGTACC 1 cut(s) 2697
AccB1I GGYRCC 1 cut(s) 2697
AciI CCGC 4 cut(s) 345, 584, 2167, 3341
AclWI GGATC 4 cut(s) 430, 937, 1885, 3002
AcoI YGGCCR 2 cut(s) 603, 2459
AcsI RAATTY 6 cut(s) 997, 1114, 1480, 1852, 2335, 2860
AcuI CTGAAG 2 cut(s) 743, 969
AfaI GTAC 3 cut(s) 1012, 1920, 2699
AfiI CCNNNNNNNGG 7 cut(s) 30, 593, 884, 1172, 1388, 2685, 2918
AflII CTTAAG 3 cut(s) 893, 2180, 2357
AflIII ACRYGT 2 cut(s) 230, 3031
AgeI ACCGGT 1 cut(s) 1079
AhdI GACNNNNNGTC 1 cut(s) 1625
AjuI GAANNNNNNNTTGG 2 cut(s) 462, 494
Alw21I GWGCWC 3 cut(s) 594, 885, 2300
Alw26I GTCTC 6 cut(s) 666, 1029, 1642, 2061, 3043, 3270
AlwI GGATC 4 cut(s) 430, 937, 1885, 3002
AlwNI CAGNNNCTG 2 cut(s) 766, 2474
Ama87I CYCGRG 2 cut(s) 28, 3285
ApoI RAATTY 6 cut(s) 997, 1114, 1480, 1852, 2335, 2860
AseI ATTAAT 1 cut(s) 1733
AsiGI ACCGGT 1 cut(s) 1079
Asp700I GAANNNNTTC 1 cut(s) 1721
Asp718I GGTACC 1 cut(s) 2697
AspS9I GGNCC 3 cut(s) 219, 1586, 1657
AsuC2I CCSGG 2 cut(s) 574, 2102
AsuHPI GGTGA 9 cut(s) 307, 346, 392, 806, 952, 1069, 2197, 2444, 3058
AsuII TTCGAA 1 cut(s) 182
AvaI CYCGRG 2 cut(s) 28, 3285
AvaII GGWCC 2 cut(s) 219, 1586
BaeI ACNNNNGTAYC 2 cut(s) 699, 732
BalI TGGCCA 1 cut(s) 2461
BanI GGYRCC 1 cut(s) 2697
BanII GRGCYC 4 cut(s) 594, 885, 1373, 2300
BarI GAAGNNNNNNTAC 2 cut(s) 1291, 1323
BauI CACGAG 2 cut(s) 425, 2107
BbsI GAAGAC 1 cut(s) 460
Bbv12I GWGCWC 3 cut(s) 594, 885, 2300
BbvCI CCTCAGC 2 cut(s) 1415, 1565
BccI CCATC 4 cut(s) 281, 304, 1649, 3017
BceAI ACGGC 1 cut(s) 544
BclI TGATCA 1 cut(s) 2202
BcnI CCSGG 2 cut(s) 574, 2102
BcoDI GTCTC 6 cut(s) 666, 1029, 1642, 2061, 3043, 3270
BfaI CTAG 8 cut(s) 1028, 1248, 1271, 1452, 1922, 2366, 2804, 3417
BfmI CTRYAG 3 cut(s) 1396, 2466, 2475
BfrI CTTAAG 3 cut(s) 893, 2180, 2357
BfuAI ACCTGC 1 cut(s) 2121
BglII AGATCT 1 cut(s) 1146
BlpI GCTNAGC 1 cut(s) 749
Bme1390I CCNGG 2 cut(s) 574, 2102
Bme18I GGWCC 2 cut(s) 219, 1586
BmeRI GACNNNNNGTC 1 cut(s) 1625
BmeT110I CYCGRG 2 cut(s) 28, 3285
BmgT120I GGNCC 3 cut(s) 219, 1586, 1657
BmiI GGNNCC 3 cut(s) 1587, 1588, 2699
BmrFI CCNGG 2 cut(s) 574, 2102
BmrI ACTGGG 1 cut(s) 506
BmsI GCATC 5 cut(s) 1751, 2362, 3114, 3268, 3395
BmuI ACTGGG 1 cut(s) 506
BoxI GACNNNNGTC 1 cut(s) 2053
BpiI GAAGAC 1 cut(s) 460
BpmI CTGGAG 2 cut(s) 3150, 3327
Bpu10I CCTNAGC 5 cut(s) 410, 1415, 1565, 2693, 3240
Bpu1102I GCTNAGC 1 cut(s) 749
Bpu14I TTCGAA 1 cut(s) 182
BpuEI CTTGAG 7 cut(s) 302, 696, 923, 1067, 2137, 2706, 3191
BpuMI CCSGG 2 cut(s) 574, 2102
Bsa29I ATCGAT 1 cut(s) 17
BsaBI GATNNNNATC 1 cut(s) 1140
BsaI GGTCTC 1 cut(s) 3270
BsaWI WCCGGW 6 cut(s) 356, 863, 877, 1079, 1151, 1165
BsaXI ACNNNNNCTCC 6 cut(s) 206, 220, 236, 250, 2681, 2711
Bsc4I CCNNNNNNNGG 7 cut(s) 30, 593, 884, 1172, 1388, 2685, 2918
Bse118I RCCGGY 3 cut(s) 605, 730, 1079
Bse8I GATNNNNATC 1 cut(s) 1140
BseCI ATCGAT 1 cut(s) 17
BseGI GGATG 9 cut(s) 273, 443, 1639, 2278, 2377, 2492, 2591, 2790, 3386
BseJI GATNNNNATC 1 cut(s) 1140
BseLI CCNNNNNNNGG 7 cut(s) 30, 593, 884, 1172, 1388, 2685, 2918
BseRI GAGGAG 2 cut(s) 1064, 3151
BseYI CCCAGC 1 cut(s) 23
BsgI GTGCAG 2 cut(s) 370, 661
BshNI GGYRCC 1 cut(s) 2697
BshTI ACCGGT 1 cut(s) 1079
BshVI ATCGAT 1 cut(s) 17
BsiHKAI GWGCWC 3 cut(s) 594, 885, 2300
BsiHKCI CYCGRG 2 cut(s) 28, 3285
BslFI GGGAC 2 cut(s) 1572, 2117
BslI CCNNNNNNNGG 7 cut(s) 30, 593, 884, 1172, 1388, 2685, 2918
BsmAI GTCTC 6 cut(s) 666, 1029, 1642, 2061, 3043, 3270
BsmFI GGGAC 2 cut(s) 1572, 2117
BsmI GAATGC 2 cut(s) 148, 1230
Bso31I GGTCTC 1 cut(s) 3270
BsoBI CYCGRG 2 cut(s) 28, 3285
Bsp119I TTCGAA 1 cut(s) 182
Bsp1286I GDGCHC 4 cut(s) 594, 885, 1373, 2300
Bsp1720I GCTNAGC 1 cut(s) 749
BspACI CCGC 4 cut(s) 345, 584, 2167, 3341
BspDI ATCGAT 1 cut(s) 17
BspLI GGNNCC 3 cut(s) 1587, 1588, 2699
BspMAI CTGCAG 2 cut(s) 1400, 2479
BspMI ACCTGC 1 cut(s) 2121
BspPI GGATC 4 cut(s) 430, 937, 1885, 3002
BspT104I TTCGAA 1 cut(s) 182
BspT107I GGYRCC 1 cut(s) 2697
BspTI CTTAAG 3 cut(s) 893, 2180, 2357
BspTNI GGTCTC 1 cut(s) 3270
BsrFI RCCGGY 3 cut(s) 605, 730, 1079
BssAI RCCGGY 3 cut(s) 605, 730, 1079
BssSI CACGAG 2 cut(s) 425, 2107
Bst2BI CACGAG 2 cut(s) 425, 2107
Bst4CI ACNGT 7 cut(s) 691, 821, 857, 1195, 2055, 2215, 2470
BstAFI CTTAAG 3 cut(s) 893, 2180, 2357
BstBI TTCGAA 1 cut(s) 182
BstC8I GCNNGC 5 cut(s) 732, 755, 1672, 2187, 3129
BstF5I GGATG 9 cut(s) 273, 443, 1639, 2278, 2377, 2492, 2591, 2790, 3386
BstMAI GTCTC 6 cut(s) 666, 1029, 1642, 2061, 3043, 3270
BstNSI RCATGY 3 cut(s) 234, 2678, 3035
BstPAI GACNNNNGTC 1 cut(s) 2053
BstSCI CCNGG 2 cut(s) 572, 2100
BstSFI CTRYAG 3 cut(s) 1396, 2466, 2475
BstV2I GAAGAC 1 cut(s) 460
BstX2I RGATCY 2 cut(s) 1146, 3007
BstXI CCANNNNNNTGG 2 cut(s) 216, 500
BstYI RGATCY 2 cut(s) 1146, 3007
Bsu15I ATCGAT 1 cut(s) 17
BsuTUI ATCGAT 1 cut(s) 17
BtsCI GGATG 9 cut(s) 273, 443, 1639, 2278, 2377, 2492, 2591, 2790, 3386
BtsI GCAGTG 2 cut(s) 2250, 2451
BtsIMutI CAGTG 6 cut(s) 387, 505, 1293, 1797, 2250, 2451
BveI ACCTGC 1 cut(s) 2121
Cac8I GCNNGC 5 cut(s) 732, 755, 1672, 2187, 3129
CaiI CAGNNNCTG 2 cut(s) 766, 2474
Cfr10I RCCGGY 3 cut(s) 605, 730, 1079
Cfr13I GGNCC 3 cut(s) 219, 1586, 1657
ClaI ATCGAT 1 cut(s) 17
CseI GACGC 1 cut(s) 772
Csp6I GTAC 3 cut(s) 1011, 1919, 2698
CspAI ACCGGT 1 cut(s) 1079
CviQI GTAC 3 cut(s) 1011, 1919, 2698
DriI GACNNNNNGTC 1 cut(s) 1625
EaeI YGGCCR 2 cut(s) 603, 2459
Eam1105I GACNNNNNGTC 1 cut(s) 1625
Ecl136II GAGCTC 3 cut(s) 592, 883, 2298
Eco147I AGGCCT 1 cut(s) 2085
Eco24I GRGCYC 4 cut(s) 594, 885, 1373, 2300
Eco31I GGTCTC 1 cut(s) 3270
Eco32I GATATC 1 cut(s) 2776
Eco47I GGWCC 2 cut(s) 219, 1586
Eco53kI GAGCTC 3 cut(s) 592, 883, 2298
Eco57I CTGAAG 2 cut(s) 743, 969
Eco88I CYCGRG 2 cut(s) 28, 3285
EcoICRI GAGCTC 3 cut(s) 592, 883, 2298
EcoO109I RGGNCCY 1 cut(s) 1586
EcoRV GATATC 1 cut(s) 2776
EcoT38I GRGCYC 4 cut(s) 594, 885, 1373, 2300
FalI AAGNNNNNCTT 6 cut(s) 114, 146, 1219, 1251, 1331, 1363
FaqI GGGAC 2 cut(s) 1572, 2117
FauI CCCGC 1 cut(s) 591
FauNDI CATATG 1 cut(s) 2896
FbaI TGATCA 1 cut(s) 2202
FokI GGATG 9 cut(s) 260, 430, 1646, 2285, 2384, 2499, 2598, 2777, 3373
FriOI GRGCYC 4 cut(s) 594, 885, 1373, 2300
FspBI CTAG 8 cut(s) 1028, 1248, 1271, 1452, 1922, 2366, 2804, 3417
GsaI CCCAGC 1 cut(s) 27
GsuI CTGGAG 2 cut(s) 3150, 3327
HgaI GACGC 1 cut(s) 772
HindIII AAGCTT 9 cut(s) 746, 755, 899, 1672, 1910, 2039, 2641, 3349, 3376
HphI GGTGA 9 cut(s) 307, 346, 392, 806, 952, 1069, 2197, 2444, 3058
Hpy166II GTNNAC 4 cut(s) 835, 1961, 2767, 3157
Hpy188I TCNGA 9 cut(s) 373, 596, 762, 826, 1146, 1710, 2048, 2287, 3109
Hpy8I GTNNAC 4 cut(s) 835, 1961, 2767, 3157
Hpy99I CGWCG 3 cut(s) 10, 103, 530
HpyCH4III ACNGT 7 cut(s) 691, 821, 857, 1195, 2055, 2215, 2470
HpyCH4IV ACGT 2 cut(s) 2160, 2522
HpySE526I ACGT 2 cut(s) 2160, 2522
KflI GGGWCCC 1 cut(s) 1586
KpnI GGTACC 1 cut(s) 2701
KroI GCCGGC 1 cut(s) 730
KroNI GCCGGC 1 cut(s) 732
Ksp22I TGATCA 1 cut(s) 2202
LmnI GCTCC 7 cut(s) 589, 880, 1473, 1816, 2295, 2689, 2914
LweI GCATC 5 cut(s) 1751, 2362, 3114, 3268, 3395
MaeI CTAG 8 cut(s) 1028, 1248, 1271, 1452, 1922, 2366, 2804, 3417
MaeII ACGT 2 cut(s) 2160, 2522
MaeIII GTNAC 9 cut(s) 212, 250, 380, 815, 1064, 1075, 1278, 1391, 2558
MfeI CAATTG 4 cut(s) 1769, 2190, 2760, 2883
MflI RGATCY 2 cut(s) 1146, 3007
MhlI GDGCHC 4 cut(s) 594, 885, 1373, 2300
MlsI TGGCCA 1 cut(s) 2461
MluNI TGGCCA 1 cut(s) 2461
MlyI GAGTC 5 cut(s) 194, 1771, 1863, 1966, 2099
MmeI TCCRAC 2 cut(s) 396, 3035
Mox20I TGGCCA 1 cut(s) 2461
MroNI GCCGGC 1 cut(s) 730
MroXI GAANNNNTTC 1 cut(s) 1721
MscI TGGCCA 1 cut(s) 2461
MseI TTAA 9 cut(s) 521, 894, 995, 1478, 1733, 1977, 2181, 2358, 2987
MslI CAYNNNNRTG 5 cut(s) 782, 1811, 2305, 2444, 2748
Msp20I TGGCCA 1 cut(s) 2461
MspA1I CMGCKG 2 cut(s) 1324, 3341
MspCI CTTAAG 3 cut(s) 893, 2180, 2357
MspR9I CCNGG 2 cut(s) 574, 2102
MunI CAATTG 4 cut(s) 1769, 2190, 2760, 2883
Mva1269I GAATGC 2 cut(s) 148, 1230
NaeI GCCGGC 1 cut(s) 732
NciI CCSGG 2 cut(s) 574, 2102
NdeI CATATG 1 cut(s) 2896
NgoMIV GCCGGC 1 cut(s) 730
NlaIV GGNNCC 3 cut(s) 1587, 1588, 2699
NmeAIII GCCGAG 1 cut(s) 1728
NmuCI GTSAC 5 cut(s) 250, 380, 1075, 1278, 2558
NspI RCATGY 3 cut(s) 234, 2678, 3035
NspV TTCGAA 1 cut(s) 182
PaeR7I CTCGAG 2 cut(s) 28, 3285
PceI AGGCCT 1 cut(s) 2085
PciI ACATGT 2 cut(s) 230, 3031
PcsI WCGNNNNNNNCGW 1 cut(s) 14
PctI GAATGC 2 cut(s) 148, 1230
PdiI GCCGGC 1 cut(s) 732
PdmI GAANNNNTTC 1 cut(s) 1721
PflFI GACNNNGTC 1 cut(s) 766
PfoI TCCNGGA 1 cut(s) 572
PinAI ACCGGT 1 cut(s) 1079
PleI GAGTC 5 cut(s) 194, 1770, 1863, 1965, 2099
PpsI GAGTC 5 cut(s) 194, 1770, 1863, 1965, 2099
PpuMI RGGWCCY 1 cut(s) 1586
PscI ACATGT 2 cut(s) 230, 3031
PshAI GACNNNNGTC 1 cut(s) 2053
PshBI ATTAAT 1 cut(s) 1733
Psp124BI GAGCTC 3 cut(s) 594, 885, 2300
Psp5II RGGWCCY 1 cut(s) 1586
PspFI CCCAGC 1 cut(s) 23
PspN4I GGNNCC 3 cut(s) 1587, 1588, 2699
PspPI GGNCC 3 cut(s) 219, 1586, 1657
PspPPI RGGWCCY 1 cut(s) 1586
PspXI VCTCGAGB 1 cut(s) 28
PstI CTGCAG 2 cut(s) 1400, 2479
PstNI CAGNNNCTG 2 cut(s) 766, 2474
PsuI RGATCY 2 cut(s) 1146, 3007
PsyI GACNNNGTC 1 cut(s) 766
PvuII CAGCTG 1 cut(s) 1324
RsaI GTAC 3 cut(s) 1012, 1920, 2699
RsaNI GTAC 3 cut(s) 1011, 1919, 2698
RseI CAYNNNNRTG 5 cut(s) 782, 1811, 2305, 2444, 2748
SacI GAGCTC 3 cut(s) 594, 885, 2300
SaqAI TTAA 9 cut(s) 521, 894, 995, 1478, 1733, 1977, 2181, 2358, 2987
Sau96I GGNCC 3 cut(s) 219, 1586, 1657
SchI GAGTC 5 cut(s) 194, 1771, 1863, 1966, 2099
ScrFI CCNGG 2 cut(s) 574, 2102
SduI GDGCHC 4 cut(s) 594, 885, 1373, 2300
SfaNI GCATC 5 cut(s) 1751, 2362, 3114, 3268, 3395
SfcI CTRYAG 3 cut(s) 1396, 2466, 2475
Sfr274I CTCGAG 2 cut(s) 28, 3285
SfuI TTCGAA 1 cut(s) 182
SinI GGWCC 2 cut(s) 219, 1586
SlaI CTCGAG 2 cut(s) 28, 3285
SmiMI CAYNNNNRTG 5 cut(s) 782, 1811, 2305, 2444, 2748
SseBI AGGCCT 1 cut(s) 2085
SsiI CCGC 4 cut(s) 345, 584, 2167, 3341
SspMI CTAG 8 cut(s) 1028, 1248, 1271, 1452, 1922, 2366, 2804, 3417
SstI GAGCTC 3 cut(s) 594, 885, 2300
StuI AGGCCT 1 cut(s) 2085
StyD4I CCNGG 2 cut(s) 572, 2100
TaaI ACNGT 7 cut(s) 691, 821, 857, 1195, 2055, 2215, 2470
TaiI ACGT 2 cut(s) 2163, 2525
TauI GCSGC 1 cut(s) 3344
Tru1I TTAA 9 cut(s) 521, 894, 995, 1478, 1733, 1977, 2181, 2358, 2987
Tru9I TTAA 9 cut(s) 521, 894, 995, 1478, 1733, 1977, 2181, 2358, 2987
TscAI CASTG 6 cut(s) 394, 505, 1300, 1804, 2250, 2451
TseFI GTSAC 5 cut(s) 250, 380, 1075, 1278, 2558
Tsp45I GTSAC 5 cut(s) 250, 380, 1075, 1278, 2558
TspGWI ACGGA 2 cut(s) 269, 2546
TspRI CASTG 6 cut(s) 394, 505, 1300, 1804, 2250, 2451
Tth111I GACNNNGTC 1 cut(s) 766
Vha464I CTTAAG 3 cut(s) 893, 2180, 2357
VpaK11BI GGWCC 2 cut(s) 219, 1586
VspI ATTAAT 1 cut(s) 1733
XapI RAATTY 6 cut(s) 997, 1114, 1480, 1852, 2335, 2860
XbaI TCTAGA 1 cut(s) 1270
XceI RCATGY 3 cut(s) 234, 2678, 3035
XhoI CTCGAG 2 cut(s) 28, 3285
XmnI GAANNNNTTC 1 cut(s) 1721
XspI CTAG 8 cut(s) 1028, 1248, 1271, 1452, 1922, 2366, 2804, 3417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.