Rroxscaffold_7G00188740

SpoU rRNA Methylase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000343
Physical Location & Seq
Reverse (-)
28437727 .. 28440259
2533 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00188740.1

Sequence Viewer

Length: 369 bp
ATGGTCGGAGGGTGGCGGCGGCGGCGAGGAAACGACCCCGTATTGGCGGCGTGGATGAGGTTCATTAACGGCATTAAGAAGCCGGGGACCGATTACGGCGATCGGGGCTTTGAGCCCGAAAGGATGGCAAGCTGGTGCAAGAAATGCATATATTTGAAACTGAAATTGGAGAAGTTGGCAGCCGAGTACTATCCAAGAACATTGATGTTTCGCTCTATTGTAGCTGTTCTACTTTGTGAGTTACTATCTTTGTATGCATTAAAAGTAGATATCAATGCTGATGAAAAGGAGGCAAGCTGTGGGGCTTGGTTCCCATCCCCACATCGAGTTTTGGTGCTTGATGGTGTTCAGGTGATTCTTACTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SpoU_methylase

Protein Analysis

122

Amino Acids

13.95

Weight (kDa)

9.14

Isoelectric Point (pI)

34.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000343)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48090 AT5G48090 AT5G48090 AT5G55390 AT5G55390 AT5G55390
fragaria_vesca FvH4_3g23690 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160
malus_domestica MD03G1191000.v1.1 MD11G1207800.v1.1 MD11G1208000.v1.1
prunus_persica Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227600_v2.0.a1 Prupe.4G227700_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1
pyrus_communis pycom01g03400 pycom03g14420 pycom11g18100 pycom11g18140 pycom11g18150 pycom11g18160
rosa_chinensis RchiOBHm_Chr2g0145981 RchiOBHm_Chr4g0405241 RchiOBHm_Chr4g0405271 RchiOBHm_Chr5g0016201 RchiOBHm_Chr5g0041831 RchiOBHm_Chr5g0041871 RchiOBHm_Chr5g0041881 RchiOBHm_Chr5g0059241
rosa_laevigata RLG00000002117 RLG00000008861 RLG00000008862 RLG00000011000 RLG00000033216 RLG00000034097 RLG00000034101
rosa_multiflora Rmu_sc0000161.1_g000001 Rmu_sc0000861.1_g000040 Rmu_sc0007522.1_g000003 Rmu_sc0009443.1_g000015 Rmu_sc0022129.1_g000001 Rmu_sc0042315.1_g000001
rosa_roxburghii Rroxscaffold_1G00038660 Rroxscaffold_1G00038690 Rroxscaffold_5G00349560 Rroxscaffold_5G00349610 Rroxscaffold_6G00388370 Rroxscaffold_7G00188740
rosa_rugosa Rorug03G0199700 Rorug04G0055400 Rorug04G0055500 Rorug04G0055900 Rorug04G0056000 Rorug04G0056100 Rorug04G0056100 Rorug04G0056200 Rorug05G0195600 Rorug05G0195700 Rorug05G0195800 Rorug05G0195900 Rorug05G0196800 Rorug05G0385000
rosa_samantha Rh4AG129900 Rh4AG130100 Rh4BG124200 Rh4BG124400 Rh4BG124500 Rh4CG137200 Rh4CG137300 Rh4DG123500 Rh4DG123700 Rh5AG280800 Rh5AG281400 Rh5BG286700 Rh5BG287000 Rh5BG397800 Rh5CG318100 Rh5CG318600 Rh5CG421600 Rh5DG132300 Rh5DG132400 Rh5DG295400 Rh5DG295700 Rh7BG475300
rosa_wichuraiana Rw0G001330 Rw0G005730 Rw4G008670 Rw4G010510 Rw4G010540 Rw5G026450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 16, 19, 22, 47
AfaI GTAC 1 cut(s) 188
AfiI CCNNNNNNNGG 1 cut(s) 43
AgsI TTSAA 1 cut(s) 157
AjuI GAANNNNNNNTTGG 2 cut(s) 149, 181
AluBI AGCT 3 cut(s) 132, 224, 297
AluI AGCT 3 cut(s) 132, 224, 297
ApeKI GCWGC 1 cut(s) 179
AspS9I GGNCC 1 cut(s) 87
AsuC2I CCSGG 1 cut(s) 84
AsuHPI GGTGA 1 cut(s) 364
AvaII GGWCC 1 cut(s) 87
BanII GRGCYC 1 cut(s) 117
BbvI GCAGC 1 cut(s) 191
BccI CCATC 3 cut(s) 118, 322, 335
BceAI ACGGC 2 cut(s) 85, 112
BcnI CCSGG 1 cut(s) 84
BisI GCNGC 5 cut(s) 17, 20, 23, 48, 180
BlsI GCNGC 5 cut(s) 18, 21, 24, 49, 181
BmcAI AGTACT 1 cut(s) 188
Bme1390I CCNGG 1 cut(s) 84
Bme18I GGWCC 1 cut(s) 87
BmgT120I GGNCC 1 cut(s) 87
BmiI GGNNCC 2 cut(s) 88, 311
BmrFI CCNGG 1 cut(s) 84
BpuMI CCSGG 1 cut(s) 84
BsaJI CCNNGG 1 cut(s) 83
Bsc4I CCNNNNNNNGG 1 cut(s) 43
BseDI CCNNGG 1 cut(s) 83
BseGI GGATG 3 cut(s) 60, 129, 314
BseLI CCNNNNNNNGG 1 cut(s) 43
BseXI GCAGC 1 cut(s) 191
Bsh1285I CGRYCG 1 cut(s) 103
BsiEI CGRYCG 1 cut(s) 103
BsiSI CCGG 1 cut(s) 83
BslFI GGGAC 1 cut(s) 100
BslI CCNNNNNNNGG 1 cut(s) 43
BsmFI GGGAC 1 cut(s) 100
Bsp1286I GDGCHC 1 cut(s) 117
Bsp143I GATC 1 cut(s) 100
BspACI CCGC 4 cut(s) 16, 19, 22, 47
BspLI GGNNCC 2 cut(s) 88, 311
BssECI CCNNGG 1 cut(s) 83
BssMI GATC 1 cut(s) 100
BstAPI GCANNNNNTGC 1 cut(s) 144
BstC8I GCNNGC 2 cut(s) 130, 295
BstF5I GGATG 3 cut(s) 60, 129, 314
BstKTI GATC 1 cut(s) 103
BstMBI GATC 1 cut(s) 100
BstMCI CGRYCG 1 cut(s) 103
BstMWI GCNNNNNNNGC 3 cut(s) 22, 105, 144
BstSCI CCNGG 1 cut(s) 82
BstV1I GCAGC 1 cut(s) 191
BtsCI GGATG 3 cut(s) 60, 129, 314
Cac8I GCNNGC 2 cut(s) 130, 295
Cfr13I GGNCC 1 cut(s) 87
Csp6I GTAC 1 cut(s) 187
CviJI RGCY 8 cut(s) 82, 108, 115, 132, 182, 224, 297, 305
CviKI_1 RGCY 8 cut(s) 82, 108, 115, 132, 182, 224, 297, 305
CviQI GTAC 1 cut(s) 187
DpnI GATC 1 cut(s) 102
DpnII GATC 1 cut(s) 100
Eco24I GRGCYC 1 cut(s) 117
Eco32I GATATC 1 cut(s) 271
Eco47I GGWCC 1 cut(s) 87
EcoRV GATATC 1 cut(s) 271
EcoT22I ATGCAT 2 cut(s) 149, 259
EcoT38I GRGCYC 1 cut(s) 117
FaiI YATR 3 cut(s) 149, 151, 255
FaqI GGGAC 1 cut(s) 100
Fnu4HI GCNGC 5 cut(s) 17, 20, 23, 48, 180
FokI GGATG 3 cut(s) 67, 136, 301
FriOI GRGCYC 1 cut(s) 117
Fsp4HI GCNGC 5 cut(s) 17, 20, 23, 48, 180
GluI GCNGC 5 cut(s) 17, 20, 23, 48, 180
HapII CCGG 1 cut(s) 83
HinfI GANTC 1 cut(s) 355
HpaII CCGG 1 cut(s) 83
HphI GGTGA 1 cut(s) 364
Hpy188I TCNGA 1 cut(s) 8
HpyCH4V TGCA 3 cut(s) 138, 147, 257
HpyF10VI GCNNNNNNNGC 3 cut(s) 22, 105, 144
Kzo9I GATC 1 cut(s) 100
LpnPI CCDG 3 cut(s) 96, 118, 335
Lsp1109I GCAGC 1 cut(s) 191
MaeIII GTNAC 1 cut(s) 240
MalI GATC 1 cut(s) 102
MboI GATC 1 cut(s) 100
MhlI GDGCHC 1 cut(s) 117
MluCI AATT 1 cut(s) 164
MnlI CCTC 3 cut(s) 20, 51, 283
Mph1103I ATGCAT 2 cut(s) 149, 259
MseI TTAA 3 cut(s) 66, 75, 260
MspI CCGG 1 cut(s) 83
MspR9I CCNGG 1 cut(s) 84
MwoI GCNNNNNNNGC 3 cut(s) 22, 105, 144
NciI CCSGG 1 cut(s) 84
NdeII GATC 1 cut(s) 100
NlaIV GGNNCC 2 cut(s) 88, 311
NmeAIII GCCGAG 1 cut(s) 208
NsiI ATGCAT 2 cut(s) 149, 259
PfeI GAWTC 1 cut(s) 355
PkrI GCNGC 5 cut(s) 18, 21, 24, 49, 181
Ple19I CGATCG 1 cut(s) 103
PspN4I GGNNCC 2 cut(s) 88, 311
PspPI GGNCC 1 cut(s) 87
PvuI CGATCG 1 cut(s) 103
RsaI GTAC 1 cut(s) 188
RsaNI GTAC 1 cut(s) 187
SaqAI TTAA 3 cut(s) 66, 75, 260
SatI GCNGC 5 cut(s) 17, 20, 23, 48, 180
Sau3AI GATC 1 cut(s) 100
Sau96I GGNCC 1 cut(s) 87
ScaI AGTACT 1 cut(s) 188
ScrFI CCNGG 1 cut(s) 84
SduI GDGCHC 1 cut(s) 117
SetI ASST 5 cut(s) 62, 134, 226, 299, 354
SinI GGWCC 1 cut(s) 87
Sse9I AATT 1 cut(s) 164
SsiI CCGC 4 cut(s) 16, 19, 22, 47
StyD4I CCNGG 1 cut(s) 82
TaqI TCGA 1 cut(s) 325
TaqII GACCGA 1 cut(s) 104
TasI AATT 1 cut(s) 164
TatI WGTACW 1 cut(s) 186
TauI GCSGC 4 cut(s) 19, 22, 25, 50
TfiI GAWTC 1 cut(s) 355
Tru1I TTAA 3 cut(s) 66, 75, 260
Tru9I TTAA 3 cut(s) 66, 75, 260
TseI GCWGC 1 cut(s) 179
TspDTI ATGAA 2 cut(s) 52, 297
VpaK11BI GGWCC 1 cut(s) 87
ZrmI AGTACT 1 cut(s) 188
Zsp2I ATGCAT 2 cut(s) 149, 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.