Rorug04G0055400

metal ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000343
Physical Location & Seq
Reverse (-)
8719495 .. 8725513
6019 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0055400.1

Sequence Viewer

Length: 3405 bp
ATGACTAGTGAGATTCGTGGTACTTCTGGACAACAGTTCCGCAAAGATGCAACAACTCATGTGCCAAGTGACAGAAGTGGTGCAGATAGAGATGTAGATAATATTTGTGTACAGACGGGCGAGGAATTCTCAACGGAGTTTCTGCAGGATCGTATAGCACAAAGAAGATTAGCCCCAGTAGTGACTGGTATTGAGCAGCACCAGTCGAAAAGAGTGGGATTTAATTTAAATCAAAACAATCCGCAGCTCGTTAATGAGGATCTAAATGGAATTCTTGGACTAAGGAGATTAGATTCTGATGGAAGTTCAGAATTTTCAGATTTTGTTACAGCTGCTACAGGTTATGTGCCTGATTTAGAGAAGAATGTTTTTCCTAGTAGTAACGTCAGCAGACAGTATGGTGGTCTTCGAAGACAACTATCAGGTAAGTTTGCGGAAGAAGTTAATCGTGATTGGGTTATTCCTAGATCAAATACTCCACCTTTTTATGTTGGTGAATCCCCTCAGTCATATAGTCCATATGGTCAAGGATTTTTTGAAGGCTCTTTCTCTTTCAAAATGAAGTTTCTTTGCAGTTTTGGGGGGAGAATATTACCTAGGCCAAATGATGGGAAGCTCAGATATGTTGGTGGAGATACTCGGATTTTATCTATTCACAAAAGCACCAATTTGGAGGAACTAATGAAGAAGACATTGGCAATTTGTAACCACCCCCATACTATCAAGTACCAACTTCCTGGTGAGGAGCTTGATGCACTTGTATCTGTTTGTTCTGATGAGGACCTCCATCACATGATAGAGGAATATCATGATCTGGAAAGAACTGAAGGTTCTCAAAGATTGCGGCTCTTTCTTGTACCTTTAAATGAACCAGAGAGCCCTAGTTCTATTGAAGGCAGGGTCACACATCCAATGGGGCCTGACAGCCAATATGTCTTTGCTGTTAATGGCATGCTAGACAGAAGCCCTCGGAAAAGCTCCAGCGGTCAGAGTTTGACAAGTCAGACTAGTCACTTTGGGAATGCCTCAGATTATAGTCATAGAGACGCTTCCACATCTGCATTTACTTTAGAGAACAAGGACGTTAGTCTAAGTTCCTCAAATCTGTCGGGGACAAGTAGTAAACATGCTCGCCAGTTCTTAGGTACTCTTCAGATCCCACAGAAGTCTTTTATTCCATCCCCTCCACTATCTCCTGTTCAACTTCAACACAGGGACCCCAAAAATTCTAATGTGCAGCTACATTTGGATCAACCATATTGTCATGGTAATGGAGGCATTGCTCTCTCTGATGTTGATGCTGTGGGCTATATCAATAATATTGATCATGGTCCTCCATTGATGAATTACCTTCAGCACAACAAAAATTTGGCTGAGACCTACCTGACTAAAAAACCCCTCAATCGTAGCGCAAGTGAAGATTTTGTGCCTTCTGCCCAGTATGGTCAAGGTGGCATGAACTTTGAGAGACACATGCCTCTTAGAAAGCCCTTGATCCATTCTGACAAGTCTGTCTCTCATCCTAAAGATATACTGGATTTATTGTTACCGACTGGTAATATAGATGCCTCCCATCAAAAAATAATGCATGTACTTTCTGACTCTTGGTTGCACGAGCATCTCGAAATGTCCTTGGAAGGAGAAAATGTCTCAGTGCCATTGAATTTGATCAGAGAAGGATCACCTTCACTGGAGATGCCAAGTTCCTCGCAAGAACGAGAGGCTCAGCTGGTTGACCAGAAAAACAAAATGGTTACACATAGTAATCAATTTAATATCAGCACACCTCACCATTGCAAGGAGGAAGAAGGTCTGGAGGTGTTCAACCATTACACGAATGACACTTCTGCTGATAAAAAATGGAAGCACTTCGAAGGAAATGTTGAAGTTACTTCAAATGATGCTGTCATGGAATTTAAGAACTTACTAAATATGAACTACCTTAAAGATGCAGTGGACCCCCAAGAGTACAAATTAGACACAACTTCTCAGTGTTCTCATAGGATTCAAAATGGTACAAATGATCAGCAGTGTACTACAACAATTAGTGGTCAATCAATTTCCCGGCCCCATGGATTACTAACTGTTGCATCTCAAGAATTCTTAATCTCAAGCCCTCAAATGCCTACAAGTTCTGCTTCAGATAGAGAATATTCTCTGCATGATAATTATCCCGAGTATGTGGTTGAAAAGGTGGGTTCTGGCAGACACTCTTTCGAGAATCTGAAATGTGAAGATGTTCGCCCTGTCCAGTCACAGCCCTTAGATAATCATAATGACAATAAGGTGACAAAATCAGTGGTTATTGTTGAAGACTTAACTAATAGCACACCACCTGGAATTCCCGCTTCTAAAGCGGTCTATCGTGTCTCCCATATAGAAGATGAGACCAGTGATGAATGTTCATCACCTACAGAGACAGAGATAAGTGCAGCTCCAGAGTCTGAGAGAAAGGGTGTGACTGCAGATGGCAAAGATAGGCATGAAACTATTAGTGATGCTGCAATAGCCGAAATGGAAGCAGGCATCTATGGTTTGCAGATCATAAAAAATGCTGATCTTGAAGAACTGCAGGAGTTGGGATCTGGTACATTTGGAACTGTCTACCATGGGAAGTGGAGAGGAACAGATGTTGCTATTAAGAGAATAAAAAAGAGTTGTTTTTCTGACAGATCATCAGAGCAAGAGCGGCTGACTAAGGACTTCTGGAGAGAGGCAAAGATTCTTTCCACCCTTCACCATCCAAATGTAGTAGCACTTTATGGAGTAGTACCTGATGGCCCTGGAGGAACATTGGCAACTGTAGCTGAATTTATGGTGAATGGATCATTGAGGCATGTCCTAGTTAGGAAGGACAGAGTACTTGACCGCCGAAAGAGGCTCATAATCTTGATGGACACAGCTTTTGGCATGGAGTATTTGCATTTGAAAAATATTGTTCACTTTGATTTGAAGTGTGACAATTTGCTTGTCAATTTGAGGGATCCTGAAAGACCCATATGTAAGGTTGCTGATTTTGGGCTGTCTAGAATTAAACGCAACACACTAGTATCTGGTGGTGTGCGAGGAACCCTTCCATGGATGGCACCAGAATTATTAAATGGTAGTAGTAGCCGTGTCTCTGAGAAGGTTGATGTGTTCTCATTTGGTATTGTAATGTGGGAGATCTTGACTGGGGAGGAACCGTATGCGAACATGCATTGTGGTGCTATCATAGGGGGAATTGTAAATAATACACTAAGGCCTCCTATTCCAAAGCGCTGCGACTCGGAGTGGAAAAAGTTAATGGAAGAGTGCTGGTCACCGGATCCTTCTGATCGGCCATCATTCACAGATATAACACATAGGCTACGTGATATGTCAACTGCACTCCAGAAGAAGCGGTCTAATGTTGCAAGTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006950 GO:0006952 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009791 GO:0009889 GO:0009893 GO:0009909 GO:0009911 GO:0009987 GO:0010228 GO:0010468 GO:0010556 GO:0010604 GO:0010638 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030154 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031326 GO:0031399 GO:0031401 GO:0031440 GO:0031935 GO:0031937 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0033043 GO:0033044 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043954 GO:0044030 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048468 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050684 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051052 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051276 GO:0051570 GO:0051574 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060968 GO:0061085 GO:0061087 GO:0061458 GO:0065007 GO:0070827 GO:0070828 GO:0070829 GO:0071840 GO:0080090 GO:0090436 GO:0097159 GO:0098542 GO:0099402 GO:0140110 GO:1900109 GO:1900111 GO:1900363 GO:1901363 GO:1902275 GO:1903311 GO:1903506 GO:1905269 GO:2000024 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNMT1-RFD

Protein Analysis

1134

Amino Acids

126.7

Weight (kDa)

5.95

Isoelectric Point (pI)

51.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PB1 PF00564 202 - 287 2.4e-20 PB1 domain
Pkinase PF00069 855 - 1115 3e-50 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 856 - 1117 2.4e-63 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000343)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48090 AT5G48090 AT5G48090 AT5G55390 AT5G55390 AT5G55390
fragaria_vesca FvH4_3g23690 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160
malus_domestica MD03G1191000.v1.1 MD11G1207800.v1.1 MD11G1208000.v1.1
prunus_persica Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227600_v2.0.a1 Prupe.4G227700_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1
pyrus_communis pycom01g03400 pycom03g14420 pycom11g18100 pycom11g18140 pycom11g18150 pycom11g18160
rosa_chinensis RchiOBHm_Chr2g0145981 RchiOBHm_Chr4g0405241 RchiOBHm_Chr4g0405271 RchiOBHm_Chr5g0016201 RchiOBHm_Chr5g0041831 RchiOBHm_Chr5g0041871 RchiOBHm_Chr5g0041881 RchiOBHm_Chr5g0059241
rosa_laevigata RLG00000002117 RLG00000008861 RLG00000008862 RLG00000011000 RLG00000033216 RLG00000034097 RLG00000034101
rosa_multiflora Rmu_sc0000161.1_g000001 Rmu_sc0000861.1_g000040 Rmu_sc0007522.1_g000003 Rmu_sc0009443.1_g000015 Rmu_sc0022129.1_g000001 Rmu_sc0042315.1_g000001
rosa_roxburghii Rroxscaffold_1G00038660 Rroxscaffold_1G00038690 Rroxscaffold_5G00349560 Rroxscaffold_5G00349610 Rroxscaffold_6G00388370 Rroxscaffold_7G00188740
rosa_rugosa Rorug03G0199700 Rorug04G0055400 Rorug04G0055500 Rorug04G0055900 Rorug04G0056000 Rorug04G0056100 Rorug04G0056100 Rorug04G0056200 Rorug05G0195600 Rorug05G0195700 Rorug05G0195800 Rorug05G0195900 Rorug05G0196800 Rorug05G0385000
rosa_samantha Rh4AG129900 Rh4AG130100 Rh4BG124200 Rh4BG124400 Rh4BG124500 Rh4CG137200 Rh4CG137300 Rh4DG123500 Rh4DG123700 Rh5AG280800 Rh5AG281400 Rh5BG286700 Rh5BG287000 Rh5BG397800 Rh5CG318100 Rh5CG318600 Rh5CG421600 Rh5DG132300 Rh5DG132400 Rh5DG295400 Rh5DG295700 Rh7BG475300
rosa_wichuraiana Rw0G001330 Rw0G005730 Rw4G008670 Rw4G010510 Rw4G010540 Rw5G026450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1511
AccB1I GGYRCC 1 cut(s) 3085
AccB7I CCANNNNNTGG 1 cut(s) 608
AccBSI CCGCTC 1 cut(s) 2689
AccI GTMKAC 1 cut(s) 2604
AcoI YGGCCR 1 cut(s) 3320
AcuI CTGAAG 4 cut(s) 846, 1136, 1337, 2124
AfeI AGCGCT 1 cut(s) 3260
AfiI CCNNNNNNNGG 3 cut(s) 608, 1798, 3078
AhlI ACTAGT 3 cut(s) 5, 1007, 3046
AjnI CCWGG 3 cut(s) 736, 2335, 2782
AjuI GAANNNNNNNTTGG 2 cut(s) 677, 709
Alw26I GTCTC 9 cut(s) 1038, 1370, 1462, 1519, 1654, 2374, 2381, 2411, 3124
AlwNI CAGNNNCTG 1 cut(s) 2444
Ama87I CYCGRG 1 cut(s) 2174
Aor51HI AGCGCT 1 cut(s) 3260
AoxI GGCC 6 cut(s) 599, 917, 2066, 2779, 3242, 3320
ApeKI GCWGC 7 cut(s) 196, 244, 332, 1237, 2432, 2501, 3261
ArsI GACNNNNNNTTYG 2 cut(s) 2888, 2920
Asp700I GAANNNNTTC 2 cut(s) 1868, 2238
AspA2I CCTAGG 1 cut(s) 596
AspLEI GCGC 2 cut(s) 1412, 3261
AspS9I GGNCC 7 cut(s) 781, 917, 1216, 1331, 1957, 2067, 2780
AsuC2I CCSGG 1 cut(s) 2065
AsuHPI GGTGA 9 cut(s) 506, 752, 1674, 1781, 2299, 2400, 2729, 2830, 3294
AsuII TTCGAA 2 cut(s) 409, 1872
AvaI CYCGRG 1 cut(s) 2174
AvaII GGWCC 4 cut(s) 781, 1216, 1331, 1957
AvrII CCTAGG 1 cut(s) 596
BaeI ACNNNNGTAYC 2 cut(s) 3033, 3066
BamHI GGATCC 2 cut(s) 2983, 3307
BanI GGYRCC 1 cut(s) 3085
BanII GRGCYC 1 cut(s) 881
BauI CACGAG 1 cut(s) 1613
BbsI GAAGAC 4 cut(s) 398, 418, 695, 2319
BbvI GCAGC 7 cut(s) 208, 256, 319, 1249, 2444, 2488, 3248
BceAI ACGGC 1 cut(s) 3099
BciT130I CCWGG 3 cut(s) 738, 2337, 2784
BclI TGATCA 3 cut(s) 1324, 1668, 2023
BcnI CCSGG 1 cut(s) 2065
BcoDI GTCTC 9 cut(s) 1038, 1370, 1462, 1519, 1654, 2374, 2381, 2411, 3124
BcuI ACTAGT 3 cut(s) 5, 1007, 3046
BfmI CTRYAG 6 cut(s) 143, 336, 2412, 2463, 2570, 2802
BfoI RGCGCY 1 cut(s) 3262
BglII AGATCT 1 cut(s) 3165
BisI GCNGC 9 cut(s) 197, 245, 333, 845, 1238, 2433, 2502, 2690, 3262
BlnI CCTAGG 1 cut(s) 596
BlpI GCTNAGC 1 cut(s) 1725
BlsI GCNGC 9 cut(s) 198, 246, 334, 846, 1239, 2434, 2503, 2691, 3263
BmcAI AGTACT 1 cut(s) 2862
Bme1390I CCNGG 4 cut(s) 738, 2065, 2337, 2784
Bme18I GGWCC 4 cut(s) 781, 1216, 1331, 1957
BmeT110I CYCGRG 1 cut(s) 2174
BmgT120I GGNCC 7 cut(s) 781, 917, 1216, 1331, 1957, 2067, 2780
BmrFI CCNGG 4 cut(s) 738, 2065, 2337, 2784
BmrI ACTGGG 3 cut(s) 170, 1432, 3183
BmuI ACTGGG 3 cut(s) 170, 1432, 3183
BoxI GACNNNNGTC 1 cut(s) 1086
BpiI GAAGAC 4 cut(s) 398, 418, 695, 2319
BplI GAGNNNNNCTC 2 cut(s) 113, 145
BpmI CTGGAG 7 cut(s) 964, 1712, 1835, 2421, 2728, 2805, 3356
Bpu1102I GCTNAGC 1 cut(s) 1725
Bpu14I TTCGAA 2 cut(s) 409, 1872
BpuEI CTTGAG 2 cut(s) 2079, 2095
BpuMI CCSGG 1 cut(s) 2065
BsaAI YACGTR 1 cut(s) 3353
BsaBI GATNNNNATC 1 cut(s) 2169
BsaI GGTCTC 2 cut(s) 1370, 2381
BsaJI CCNNGG 7 cut(s) 596, 968, 1632, 2071, 2608, 2782, 3077
BsaWI WCCGGW 1 cut(s) 3304
BsaXI ACNNNNNCTCC 4 cut(s) 1632, 1662, 3170, 3200
Bsc4I CCNNNNNNNGG 3 cut(s) 608, 1798, 3078
Bse3DI GCAATG 2 cut(s) 1278, 1792
Bse8I GATNNNNATC 1 cut(s) 2169
BseBI CCWGG 3 cut(s) 738, 2337, 2784
BseDI CCNNGG 7 cut(s) 596, 968, 1632, 2071, 2608, 2782, 3077
BseGI GGATG 5 cut(s) 907, 1178, 1519, 2740, 3087
BseJI GATNNNNATC 1 cut(s) 2169
BseLI CCNNNNNNNGG 3 cut(s) 608, 1798, 3078
BseMI GCAATG 2 cut(s) 1278, 1792
BseMII CTCAG 9 cut(s) 518, 631, 1041, 1365, 1665, 1739, 2003, 2436, 3114
BseRI GAGGAG 1 cut(s) 758
BseXI GCAGC 7 cut(s) 208, 256, 319, 1249, 2444, 2488, 3248
BsgI GTGCAG 4 cut(s) 102, 1256, 2451, 3351
BshFI GGCC 6 cut(s) 601, 919, 2068, 2781, 3244, 3322
BshNI GGYRCC 1 cut(s) 3085
BsiHKCI CYCGRG 1 cut(s) 2174
BsiSI CCGG 2 cut(s) 2065, 3305
BslFI GGGAC 2 cut(s) 1126, 1229
BslI CCNNNNNNNGG 3 cut(s) 608, 1798, 3078
BsmAI GTCTC 9 cut(s) 1038, 1370, 1462, 1519, 1654, 2374, 2381, 2411, 3124
BsmBI CGTCTC 1 cut(s) 1038
BsmFI GGGAC 2 cut(s) 1126, 1229
BsmI GAATGC 1 cut(s) 1027
BsnI GGCC 6 cut(s) 601, 919, 2068, 2781, 3244, 3322
Bso31I GGTCTC 2 cut(s) 1370, 2381
BsoBI CYCGRG 1 cut(s) 2174
Bsp119I TTCGAA 2 cut(s) 409, 1872
Bsp1286I GDGCHC 1 cut(s) 881
Bsp1407I TGTACA 1 cut(s) 109
Bsp1720I GCTNAGC 1 cut(s) 1725
Bsp19I CCATGG 3 cut(s) 2071, 2608, 3077
BspANI GGCC 6 cut(s) 601, 919, 2068, 2781, 3244, 3322
BspCNI CTCAG 9 cut(s) 517, 630, 1040, 1366, 1664, 1738, 2002, 2437, 3115
BspHI TCATGA 1 cut(s) 808
BspMAI CTGCAG 3 cut(s) 147, 2467, 2574
BspT104I TTCGAA 2 cut(s) 409, 1872
BspT107I GGYRCC 1 cut(s) 3085
BspTNI GGTCTC 2 cut(s) 1370, 2381
BsrBI CCGCTC 1 cut(s) 2689
BsrDI GCAATG 2 cut(s) 1278, 1792
BsrGI TGTACA 1 cut(s) 109
BssECI CCNNGG 7 cut(s) 596, 968, 1632, 2071, 2608, 2782, 3077
BssSI CACGAG 1 cut(s) 1613
BssT1I CCWWGG 5 cut(s) 596, 1632, 2071, 2608, 3077
Bst2BI CACGAG 1 cut(s) 1613
Bst2UI CCWGG 3 cut(s) 738, 2337, 2784
Bst4CI ACNGT 6 cut(s) 36, 396, 2086, 2602, 2803, 3186
Bst6I CTCTTC 2 cut(s) 1155, 3285
BstAUI TGTACA 1 cut(s) 109
BstBAI YACGTR 1 cut(s) 3353
BstBI TTCGAA 2 cut(s) 409, 1872
BstC8I GCNNGC 3 cut(s) 953, 1132, 2524
BstDSI CCRYGG 3 cut(s) 2071, 2608, 3077
BstEII GGTNACC 1 cut(s) 3300
BstF5I GGATG 5 cut(s) 907, 1178, 1519, 2740, 3087
BstH2I RGCGCY 1 cut(s) 3262
BstHHI GCGC 2 cut(s) 1412, 3261
BstMAI GTCTC 9 cut(s) 1038, 1370, 1462, 1519, 1654, 2374, 2381, 2411, 3124
BstMWI GCNNNNNNNGC 4 cut(s) 2354, 2507, 2689, 2804
BstNI CCWGG 3 cut(s) 738, 2337, 2784
BstNSI RCATGY 6 cut(s) 955, 1130, 1477, 1592, 2840, 3199
BstPAI GACNNNNGTC 1 cut(s) 1086
BstPI GGTNACC 1 cut(s) 3300
BstSCI CCNGG 4 cut(s) 736, 2063, 2335, 2782
BstSFI CTRYAG 6 cut(s) 143, 336, 2412, 2463, 2570, 2802
BstV1I GCAGC 7 cut(s) 208, 256, 319, 1249, 2444, 2488, 3248
BstV2I GAAGAC 4 cut(s) 398, 418, 695, 2319
BstX2I RGATCY 6 cut(s) 259, 1155, 2582, 2983, 3165, 3307
BstXI CCANNNNNNTGG 1 cut(s) 737
BstYI RGATCY 6 cut(s) 259, 1155, 2582, 2983, 3165, 3307
BsuRI GGCC 6 cut(s) 601, 919, 2068, 2781, 3244, 3322
BtgI CCRYGG 3 cut(s) 2071, 2608, 3077
BtsCI GGATG 5 cut(s) 907, 1178, 1519, 2740, 3087
BtsI GCAGTG 2 cut(s) 1959, 2036
BtsIMutI CAGTG 7 cut(s) 1659, 1688, 1959, 1997, 2036, 2304, 2398
Cac8I GCNNGC 3 cut(s) 953, 1132, 2524
CaiI CAGNNNCTG 1 cut(s) 2444
CciI TCATGA 1 cut(s) 808
CfoI GCGC 2 cut(s) 1412, 3261
Cfr13I GGNCC 7 cut(s) 781, 917, 1216, 1331, 1957, 2067, 2780
CseI GACGC 1 cut(s) 1055
CspCI CAANNNNNGTGG 2 cut(s) 2280, 2315
DraI TTTAAA 2 cut(s) 228, 864
DrdI GACNNNNNNGTC 1 cut(s) 1511
DseDI GACNNNNNNGTC 1 cut(s) 1511
EaeI YGGCCR 1 cut(s) 3320
Eam1104I CTCTTC 2 cut(s) 1155, 3285
EarI CTCTTC 2 cut(s) 1155, 3285
Eco130I CCWWGG 5 cut(s) 596, 1632, 2071, 2608, 3077
Eco147I AGGCCT 1 cut(s) 3244
Eco24I GRGCYC 1 cut(s) 881
Eco31I GGTCTC 2 cut(s) 1370, 2381
Eco47I GGWCC 4 cut(s) 781, 1216, 1331, 1957
Eco47III AGCGCT 1 cut(s) 3260
Eco57I CTGAAG 4 cut(s) 846, 1136, 1337, 2124
Eco88I CYCGRG 1 cut(s) 2174
Eco91I GGTNACC 1 cut(s) 3300
EcoO109I RGGNCCY 3 cut(s) 781, 917, 1216
EcoO65I GGTNACC 1 cut(s) 3300
EcoRI GAATTC 4 cut(s) 125, 270, 2099, 2340
EcoRII CCWGG 3 cut(s) 736, 2335, 2782
EcoT14I CCWWGG 5 cut(s) 596, 1632, 2071, 2608, 3077
EcoT22I ATGCAT 2 cut(s) 1590, 3201
EcoT38I GRGCYC 1 cut(s) 881
ErhI CCWWGG 5 cut(s) 596, 1632, 2071, 2608, 3077
Esp3I CGTCTC 1 cut(s) 1038
FalI AAGNNNNNCTT 2 cut(s) 2122, 2154
FaqI GGGAC 2 cut(s) 1126, 1229
FauI CCCGC 1 cut(s) 2353
FauNDI CATATG 2 cut(s) 520, 2999
FbaI TGATCA 3 cut(s) 1324, 1668, 2023
FblI GTMKAC 1 cut(s) 2604
Fnu4HI GCNGC 9 cut(s) 197, 245, 333, 845, 1238, 2433, 2502, 2690, 3262
FokI GGATG 5 cut(s) 894, 1165, 1506, 2727, 3094
FriOI GRGCYC 1 cut(s) 881
Fsp4HI GCNGC 9 cut(s) 197, 245, 333, 845, 1238, 2433, 2502, 2690, 3262
GlaI GCGC 2 cut(s) 1411, 3260
GluI GCNGC 9 cut(s) 197, 245, 333, 845, 1238, 2433, 2502, 2690, 3262
GsuI CTGGAG 7 cut(s) 964, 1712, 1835, 2421, 2728, 2805, 3356
HaeII RGCGCY 1 cut(s) 3262
HaeIII GGCC 6 cut(s) 601, 919, 2068, 2781, 3244, 3322
HapII CCGG 2 cut(s) 2065, 3305
HgaI GACGC 1 cut(s) 1055
HhaI GCGC 2 cut(s) 1412, 3261
Hin6I GCGC 2 cut(s) 1410, 3259
HinP1I GCGC 2 cut(s) 1410, 3259
HincII GTYRAC 2 cut(s) 1735, 3363
HindII GTYRAC 2 cut(s) 1735, 3363
HinfI GANTC 9 cut(s) 13, 293, 497, 1601, 2005, 2221, 2441, 2722, 3266
HpaII CCGG 2 cut(s) 2065, 3305
HphI GGTGA 9 cut(s) 506, 752, 1674, 1781, 2299, 2400, 2729, 2830, 3294
Hpy166II GTNNAC 8 cut(s) 110, 1124, 1735, 1957, 2034, 2605, 2941, 3363
Hpy8I GTNNAC 8 cut(s) 110, 1124, 1735, 1957, 2034, 2605, 2941, 3363
HpyCH4III ACNGT 6 cut(s) 36, 396, 2086, 2602, 2803, 3186
HpyCH4IV ACGT 3 cut(s) 384, 1083, 3352
HpyF10VI GCNNNNNNNGC 4 cut(s) 2354, 2507, 2689, 2804
HpySE526I ACGT 3 cut(s) 384, 1083, 3352
HspAI GCGC 2 cut(s) 1410, 3259
KflI GGGWCCC 1 cut(s) 1216
Ksp22I TGATCA 3 cut(s) 1324, 1668, 2023
LmnI GCTCC 3 cut(s) 745, 983, 2440
Lsp1109I GCAGC 7 cut(s) 208, 256, 319, 1249, 2444, 2488, 3248
MaeII ACGT 3 cut(s) 384, 1083, 3352
MbiI CCGCTC 1 cut(s) 2689
MflI RGATCY 6 cut(s) 259, 1155, 2582, 2983, 3165, 3307
MhlI GDGCHC 1 cut(s) 881
MlyI GAGTC 3 cut(s) 1595, 2450, 3260
Mph1103I ATGCAT 2 cut(s) 1590, 3201
MroXI GAANNNNTTC 2 cut(s) 1868, 2238
MslI CAYNNNNRTG 3 cut(s) 1269, 2745, 3204
MspA1I CMGCKG 3 cut(s) 332, 984, 1729
MspI CCGG 2 cut(s) 2065, 3305
MspR9I CCNGG 4 cut(s) 738, 2065, 2337, 2784
Mva1269I GAATGC 1 cut(s) 1027
MvaI CCWGG 3 cut(s) 738, 2337, 2784
MwoI GCNNNNNNNGC 4 cut(s) 2354, 2507, 2689, 2804
NciI CCSGG 1 cut(s) 2065
NcoI CCATGG 3 cut(s) 2071, 2608, 3077
NdeI CATATG 2 cut(s) 520, 2999
NmuCI GTSAC 9 cut(s) 68, 181, 901, 1010, 2253, 2287, 2458, 2957, 3300
NsiI ATGCAT 2 cut(s) 1590, 3201
NspI RCATGY 6 cut(s) 955, 1130, 1477, 1592, 2840, 3199
NspV TTCGAA 2 cut(s) 409, 1872
PaeI GCATGC 1 cut(s) 955
PagI TCATGA 1 cut(s) 808
PceI AGGCCT 1 cut(s) 3244
PcsI WCGNNNNNNNCGW 1 cut(s) 1620
PctI GAATGC 1 cut(s) 1027
PdmI GAANNNNTTC 2 cut(s) 1868, 2238
PfeI GAWTC 6 cut(s) 13, 293, 497, 2005, 2221, 2722
PflMI CCANNNNNTGG 1 cut(s) 608
PkrI GCNGC 9 cut(s) 198, 246, 334, 846, 1239, 2434, 2503, 2691, 3263
PleI GAGTC 3 cut(s) 1595, 2449, 3260
PpsI GAGTC 3 cut(s) 1595, 2449, 3260
Ppu21I YACGTR 1 cut(s) 3353
PpuMI RGGWCCY 2 cut(s) 781, 1216
PshAI GACNNNNGTC 1 cut(s) 1086
Psp5II RGGWCCY 2 cut(s) 781, 1216
Psp6I CCWGG 3 cut(s) 736, 2335, 2782
PspEI GGTNACC 1 cut(s) 3300
PspGI CCWGG 3 cut(s) 736, 2335, 2782
PspPI GGNCC 7 cut(s) 781, 917, 1216, 1331, 1957, 2067, 2780
PspPPI RGGWCCY 2 cut(s) 781, 1216
PstI CTGCAG 3 cut(s) 147, 2467, 2574
PstNI CAGNNNCTG 1 cut(s) 2444
PsuI RGATCY 6 cut(s) 259, 1155, 2582, 2983, 3165, 3307
PvuII CAGCTG 2 cut(s) 332, 1729
RseI CAYNNNNRTG 3 cut(s) 1269, 2745, 3204
SatI GCNGC 9 cut(s) 197, 245, 333, 845, 1238, 2433, 2502, 2690, 3262
Sau96I GGNCC 7 cut(s) 781, 917, 1216, 1331, 1957, 2067, 2780
ScaI AGTACT 1 cut(s) 2862
SchI GAGTC 3 cut(s) 1595, 2450, 3260
ScrFI CCNGG 4 cut(s) 738, 2065, 2337, 2784
SduI GDGCHC 1 cut(s) 881
SfcI CTRYAG 6 cut(s) 143, 336, 2412, 2463, 2570, 2802
SfuI TTCGAA 2 cut(s) 409, 1872
SinI GGWCC 4 cut(s) 781, 1216, 1331, 1957
SmiI ATTTAAAT 1 cut(s) 228
SmiMI CAYNNNNRTG 3 cut(s) 1269, 2745, 3204
SmlI CTYRAG 2 cut(s) 2094, 2110
SmoI CTYRAG 2 cut(s) 2094, 2110
SpeI ACTAGT 3 cut(s) 5, 1007, 3046
SphI GCATGC 1 cut(s) 955
SseBI AGGCCT 1 cut(s) 3244
SspI AATATT 5 cut(s) 103, 591, 1321, 2153, 2935
StuI AGGCCT 1 cut(s) 3244
StyD4I CCNGG 4 cut(s) 736, 2063, 2335, 2782
StyI CCWWGG 5 cut(s) 596, 1632, 2071, 2608, 3077
SwaI ATTTAAAT 1 cut(s) 228
TaaI ACNGT 6 cut(s) 36, 396, 2086, 2602, 2803, 3186
TaiI ACGT 3 cut(s) 387, 1086, 3355
TaqI TCGA 5 cut(s) 206, 409, 1623, 1872, 2217
TatI WGTACW 5 cut(s) 109, 1591, 1968, 2033, 2860
TauI GCSGC 2 cut(s) 847, 2692
TfiI GAWTC 6 cut(s) 13, 293, 497, 2005, 2221, 2722
TscAI CASTG 7 cut(s) 1659, 1695, 1959, 1997, 2036, 2304, 2398
TseFI GTSAC 9 cut(s) 68, 181, 901, 1010, 2253, 2287, 2458, 2957, 3300
TseI GCWGC 7 cut(s) 196, 244, 332, 1237, 2432, 2501, 3261
Tsp45I GTSAC 9 cut(s) 68, 181, 901, 1010, 2253, 2287, 2458, 2957, 3300
TspDTI ATGAA 9 cut(s) 575, 698, 882, 1358, 1472, 1949, 2394, 2412, 2499
TspGWI ACGGA 1 cut(s) 149
TspRI CASTG 7 cut(s) 1659, 1695, 1959, 1997, 2036, 2304, 2398
Van91I CCANNNNNTGG 1 cut(s) 608
VpaK11BI GGWCC 4 cut(s) 781, 1216, 1331, 1957
XbaI TCTAGA 1 cut(s) 3026
XceI RCATGY 6 cut(s) 955, 1130, 1477, 1592, 2840, 3199
XmaJI CCTAGG 1 cut(s) 596
XmiI GTMKAC 1 cut(s) 2604
XmnI GAANNNNTTC 2 cut(s) 1868, 2238
ZrmI AGTACT 1 cut(s) 2862
Zsp2I ATGCAT 2 cut(s) 1590, 3201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.