Rmu_sc0042315.1_g000001

metal ion binding

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0042315.1
Physical Location & Seq
Forward (+)
1 .. 1072
1072 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0042315.1_g000001.1.cds

Sequence Viewer

Length: 1072 bp
caatgaccttgtaaaaaagaaaactaatgttgaagagaagaggaaacagacatcagagtcccttgttgagagagagacagccgtgtccaaaaagaaaaatccttcctcgaaagaatcctatagggaaagaaatgcttctacaactcgcaaacagaagcagaagccatcagagctcactgtagatggagatgaggctgggtctaagaagggaagtcctttggaagaatcattacgtgcaattgcttcaaccgtacccaaactgaagcagaagtcgacttctgccgtgaaactgggtactaacaagaatagggaaaagactttttccggtatagatatttcaaggatggataattcactgaaaaatgaacgtcaggcttccatgtctgagaaaatcaagacctcactgggtgaagagccattttcttcaatggagtctgagcaggtgaagctcgggaacctggatacacctgatgctaatacagttagtgagatacacagggaaatgccaccacatactgaatgtggtgacgatggaaatcagcatcctaaccccagcaagtctcgtatgcactgtgctcatgctaacagtcgagtccaattcaaaattcctgatgatgcaagcagaaggtgcaccacgagtaatgatgagcctcgttcgagtgttaccaatcctaggtctggcaatgcgaaagggtgcgagagagagaactcgggaaaaccatattcaaatgggacgaaacagaaacagaaactgagaacagaatttgacagagtcccaccggcttgcattaaagggaagcaagatcctattttttcaagaggcaatgatatagcgggccaaaattcagtgtatgaccatattaggacgttctcatctactttttacagccatataggtcctgttgctgactcgttatcttgtatcaacagattagctatgccatcagatgcaactaaattggttggtccaagagcaccccaacctgattacctggataggtgtatgggtttcgctcctggtccgcacctgaactatgcactacagaattcagctggttggatcgatgagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

356

Amino Acids

39.38

Weight (kDa)

9.21

Isoelectric Point (pI)

52.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000343)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48090 AT5G48090 AT5G48090 AT5G55390 AT5G55390 AT5G55390
fragaria_vesca FvH4_3g23690 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160
malus_domestica MD03G1191000.v1.1 MD11G1207800.v1.1 MD11G1208000.v1.1
prunus_persica Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227600_v2.0.a1 Prupe.4G227700_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1
pyrus_communis pycom01g03400 pycom03g14420 pycom11g18100 pycom11g18140 pycom11g18150 pycom11g18160
rosa_chinensis RchiOBHm_Chr2g0145981 RchiOBHm_Chr4g0405241 RchiOBHm_Chr4g0405271 RchiOBHm_Chr5g0016201 RchiOBHm_Chr5g0041831 RchiOBHm_Chr5g0041871 RchiOBHm_Chr5g0041881 RchiOBHm_Chr5g0059241
rosa_laevigata RLG00000002117 RLG00000008861 RLG00000008862 RLG00000011000 RLG00000033216 RLG00000034097 RLG00000034101
rosa_multiflora Rmu_sc0000161.1_g000001 Rmu_sc0000861.1_g000040 Rmu_sc0007522.1_g000003 Rmu_sc0009443.1_g000015 Rmu_sc0022129.1_g000001 Rmu_sc0042315.1_g000001
rosa_roxburghii Rroxscaffold_1G00038660 Rroxscaffold_1G00038690 Rroxscaffold_5G00349560 Rroxscaffold_5G00349610 Rroxscaffold_6G00388370 Rroxscaffold_7G00188740
rosa_rugosa Rorug03G0199700 Rorug04G0055400 Rorug04G0055500 Rorug04G0055900 Rorug04G0056000 Rorug04G0056100 Rorug04G0056100 Rorug04G0056200 Rorug05G0195600 Rorug05G0195700 Rorug05G0195800 Rorug05G0195900 Rorug05G0196800 Rorug05G0385000
rosa_samantha Rh4AG129900 Rh4AG130100 Rh4BG124200 Rh4BG124400 Rh4BG124500 Rh4CG137200 Rh4CG137300 Rh4DG123500 Rh4DG123700 Rh5AG280800 Rh5AG281400 Rh5BG286700 Rh5BG287000 Rh5BG397800 Rh5CG318100 Rh5CG318600 Rh5CG421600 Rh5DG132300 Rh5DG132400 Rh5DG295400 Rh5DG295700 Rh7BG475300
rosa_wichuraiana Rw0G001330 Rw0G005730 Rw4G008670 Rw4G010510 Rw4G010540 Rw5G026450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 431
AasI GACNNNNNNGTC 2 cut(s) 56, 83
Acc36I ACCTGC 1 cut(s) 431
AccI GTMKAC 1 cut(s) 273
AciI CCGC 2 cut(s) 834, 1023
AclWI GGATC 2 cut(s) 798, 1068
AcsI RAATTY 4 cut(s) 604, 762, 842, 1046
AcuI CTGAAG 1 cut(s) 282
AdeI CACNNNGTG 1 cut(s) 408
AfaI GTAC 2 cut(s) 253, 296
AfiI CCNNNNNNNGG 2 cut(s) 673, 678
AgsI TTSAA 7 cut(s) 33, 247, 340, 427, 602, 727, 817
AjnI CCWGG 3 cut(s) 457, 991, 1016
AjuI GAANNNNNNNTTGG 2 cut(s) 589, 621
AluBI AGCT 4 cut(s) 173, 449, 936, 1053
AluI AGCT 4 cut(s) 173, 449, 936, 1053
Alw21I GWGCWC 4 cut(s) 175, 578, 633, 977
Alw26I GTCTC 2 cut(s) 69, 565
Alw44I GTGCAC 1 cut(s) 629
AlwI GGATC 2 cut(s) 798, 1068
AlwNI CAGNNNCTG 1 cut(s) 752
Ama87I CYCGRG 2 cut(s) 450, 710
AoxI GGCC 1 cut(s) 836
ApaLI GTGCAC 1 cut(s) 629
ApoI RAATTY 4 cut(s) 604, 762, 842, 1046
Asp700I GAANNNNTTC 1 cut(s) 134
AspA2I CCTAGG 1 cut(s) 672
AspS9I GGNCC 4 cut(s) 836, 897, 966, 1020
AsuHPI GGTGA 3 cut(s) 420, 455, 537
AvaI CYCGRG 2 cut(s) 450, 710
AvaII GGWCC 3 cut(s) 897, 966, 1020
AvrII CCTAGG 1 cut(s) 672
BaeGI GKGCMC 1 cut(s) 633
BanII GRGCYC 1 cut(s) 175
BarI GAAGNNNNNNTAC 2 cut(s) 214, 246
BauI CACGAG 1 cut(s) 635
Bbv12I GWGCWC 4 cut(s) 175, 578, 633, 977
BccI CCATC 5 cut(s) 173, 177, 338, 525, 950
BceAI ACGGC 2 cut(s) 66, 267
BciT130I CCWGG 3 cut(s) 459, 993, 1018
BciVI GTATCC 1 cut(s) 455
BcoDI GTCTC 2 cut(s) 69, 565
BfaI CTAG 1 cut(s) 673
BfmI CTRYAG 3 cut(s) 119, 178, 1041
BfuAI ACCTGC 1 cut(s) 431
BfuI GTATCC 1 cut(s) 455
BlnI CCTAGG 1 cut(s) 672
Bme1390I CCNGG 3 cut(s) 459, 993, 1018
Bme18I GGWCC 3 cut(s) 897, 966, 1020
BmeT110I CYCGRG 2 cut(s) 450, 710
BmgT120I GGNCC 4 cut(s) 836, 897, 966, 1020
BmiI GGNNCC 1 cut(s) 456
BmrFI CCNGG 3 cut(s) 459, 993, 1018
BmrI ACTGGG 2 cut(s) 300, 414
BmsI GCATC 4 cut(s) 461, 551, 605, 938
BmuI ACTGGG 2 cut(s) 300, 414
Bsa29I ATCGAT 1 cut(s) 1063
BsaAI YACGTR 1 cut(s) 234
BsaBI GATNNNNATC 1 cut(s) 535
BsaJI CCNNGG 1 cut(s) 672
BsaWI WCCGGW 1 cut(s) 324
Bsc4I CCNNNNNNNGG 2 cut(s) 673, 678
Bse118I RCCGGY 1 cut(s) 779
Bse1I ACTGG 2 cut(s) 295, 409
Bse3DI GCAATG 2 cut(s) 689, 830
Bse8I GATNNNNATC 1 cut(s) 535
BseBI CCWGG 3 cut(s) 459, 993, 1018
BseCI ATCGAT 1 cut(s) 1063
BseDI CCNNGG 1 cut(s) 672
BseGI GGATG 2 cut(s) 349, 542
BseJI GATNNNNATC 1 cut(s) 535
BseLI CCNNNNNNNGG 2 cut(s) 673, 678
BseMI GCAATG 2 cut(s) 689, 830
BseMII CTCAG 3 cut(s) 376, 427, 744
BseNI ACTGG 2 cut(s) 295, 409
BseSI GKGCMC 1 cut(s) 633
BseYI CCCAGC 2 cut(s) 195, 552
BshFI GGCC 1 cut(s) 838
BshVI ATCGAT 1 cut(s) 1063
BsiHKAI GWGCWC 4 cut(s) 175, 578, 633, 977
BsiHKCI CYCGRG 2 cut(s) 450, 710
BsiSI CCGG 2 cut(s) 325, 780
BslFI GGGAC 3 cut(s) 44, 746, 759
BslI CCNNNNNNNGG 2 cut(s) 673, 678
BsmAI GTCTC 2 cut(s) 69, 565
BsmFI GGGAC 3 cut(s) 44, 746, 759
BsnI GGCC 1 cut(s) 838
BsoBI CYCGRG 2 cut(s) 450, 710
Bsp1286I GDGCHC 4 cut(s) 175, 578, 633, 977
Bsp143I GATC 2 cut(s) 803, 1060
BspACI CCGC 2 cut(s) 834, 1023
BspANI GGCC 1 cut(s) 838
BspCNI CTCAG 3 cut(s) 377, 428, 745
BspDI ATCGAT 1 cut(s) 1063
BspLI GGNNCC 1 cut(s) 456
BspMI ACCTGC 1 cut(s) 431
BspPI GGATC 2 cut(s) 798, 1068
BspQI GCTCTTC 1 cut(s) 406
BsrDI GCAATG 2 cut(s) 689, 830
BsrFI RCCGGY 1 cut(s) 779
BsrI ACTGG 2 cut(s) 295, 409
BssAI RCCGGY 1 cut(s) 779
BssECI CCNNGG 1 cut(s) 672
BssMI GATC 2 cut(s) 803, 1060
BssSI CACGAG 1 cut(s) 635
BssT1I CCWWGG 1 cut(s) 672
Bst2BI CACGAG 1 cut(s) 635
Bst2UI CCWGG 3 cut(s) 459, 993, 1018
Bst4CI ACNGT 5 cut(s) 179, 251, 482, 573, 588
Bst6I CTCTTC 3 cut(s) 28, 33, 406
BstAPI GCANNNNNTGC 1 cut(s) 628
BstBAI YACGTR 1 cut(s) 234
BstC8I GCNNGC 3 cut(s) 620, 785, 836
BstDEI CTNAG 4 cut(s) 202, 385, 436, 753
BstF5I GGATG 2 cut(s) 349, 542
BstKTI GATC 2 cut(s) 806, 1063
BstMAI GTCTC 2 cut(s) 69, 565
BstMBI GATC 2 cut(s) 803, 1060
BstMWI GCNNNNNNNGC 3 cut(s) 170, 446, 628
BstNI CCWGG 3 cut(s) 459, 993, 1018
BstSCI CCNGG 3 cut(s) 457, 991, 1016
BstSFI CTRYAG 3 cut(s) 119, 178, 1041
BstSLI GKGCMC 1 cut(s) 633
BstX2I RGATCY 1 cut(s) 803
BstYI RGATCY 1 cut(s) 803
Bsu15I ATCGAT 1 cut(s) 1063
BsuI GTATCC 1 cut(s) 455
BsuRI GGCC 1 cut(s) 838
BsuTUI ATCGAT 1 cut(s) 1063
BtsCI GGATG 2 cut(s) 349, 542
BtsIMutI CAGTG 5 cut(s) 175, 354, 402, 569, 853
BveI ACCTGC 1 cut(s) 431
Cac8I GCNNGC 3 cut(s) 620, 785, 836
CaiI CAGNNNCTG 1 cut(s) 752
Cfr10I RCCGGY 1 cut(s) 779
Cfr13I GGNCC 4 cut(s) 836, 897, 966, 1020
ClaI ATCGAT 1 cut(s) 1063
Csp6I GTAC 2 cut(s) 252, 295
CviAII CATG 2 cut(s) 380, 579
CviQI GTAC 2 cut(s) 252, 295
DdeI CTNAG 4 cut(s) 202, 385, 436, 753
DpnI GATC 2 cut(s) 805, 1062
DpnII GATC 2 cut(s) 803, 1060
DraIII CACNNNGTG 1 cut(s) 408
DrdI GACNNNNNNGTC 2 cut(s) 56, 83
DseDI GACNNNNNNGTC 2 cut(s) 56, 83
Eam1104I CTCTTC 3 cut(s) 28, 33, 406
EarI CTCTTC 3 cut(s) 28, 33, 406
Ecl136II GAGCTC 1 cut(s) 173
Eco130I CCWWGG 1 cut(s) 672
Eco24I GRGCYC 1 cut(s) 175
Eco47I GGWCC 3 cut(s) 897, 966, 1020
Eco53kI GAGCTC 1 cut(s) 173
Eco57I CTGAAG 1 cut(s) 282
Eco88I CYCGRG 2 cut(s) 450, 710
EcoICRI GAGCTC 1 cut(s) 173
EcoO109I RGGNCCY 1 cut(s) 897
EcoRI GAATTC 1 cut(s) 1046
EcoRII CCWGG 3 cut(s) 457, 991, 1016
EcoT14I CCWWGG 1 cut(s) 672
EcoT38I GRGCYC 1 cut(s) 175
ErhI CCWWGG 1 cut(s) 672
FaeI CATG 2 cut(s) 383, 582
FalI AAGNNNNNCTT 2 cut(s) 119, 151
FaqI GGGAC 3 cut(s) 44, 746, 759
FatI CATG 2 cut(s) 379, 578
FauI CCCGC 1 cut(s) 827
FblI GTMKAC 1 cut(s) 273
FokI GGATG 2 cut(s) 356, 529
FriOI GRGCYC 1 cut(s) 175
FspBI CTAG 1 cut(s) 673
GsaI CCCAGC 2 cut(s) 199, 556
HaeIII GGCC 1 cut(s) 838
HapII CCGG 2 cut(s) 325, 780
Hin1II CATG 2 cut(s) 383, 582
HincII GTYRAC 1 cut(s) 274
HindII GTYRAC 1 cut(s) 274
HinfI GANTC 7 cut(s) 57, 114, 225, 432, 592, 772, 909
HpaII CCGG 2 cut(s) 325, 780
HphI GGTGA 3 cut(s) 420, 455, 537
Hpy166II GTNNAC 2 cut(s) 274, 631
Hpy188I TCNGA 5 cut(s) 56, 170, 386, 437, 947
Hpy188III TCNNGA 5 cut(s) 395, 452, 609, 712, 817
Hpy8I GTNNAC 2 cut(s) 274, 631
HpyAV CCTTC 3 cut(s) 112, 200, 619
HpyCH4III ACNGT 5 cut(s) 179, 251, 482, 573, 588
HpyCH4IV ACGT 3 cut(s) 233, 368, 867
HpyCH4V TGCA 7 cut(s) 237, 569, 618, 631, 787, 951, 1038
HpyF10VI GCNNNNNNNGC 3 cut(s) 170, 446, 628
HpyF3I CTNAG 4 cut(s) 202, 385, 436, 753
HpySE526I ACGT 3 cut(s) 233, 368, 867
Hsp92II CATG 2 cut(s) 383, 582
Kzo9I GATC 2 cut(s) 803, 1060
LguI GCTCTTC 1 cut(s) 406
LmnI GCTCC 1 cut(s) 1019
LweI GCATC 4 cut(s) 461, 551, 605, 938
MaeI CTAG 1 cut(s) 673
MaeII ACGT 3 cut(s) 233, 368, 867
MaeIII GTNAC 2 cut(s) 525, 662
MalI GATC 2 cut(s) 805, 1062
MboI GATC 2 cut(s) 803, 1060
MboII GAAGA 5 cut(s) 45, 50, 234, 415, 423
MfeI CAATTG 1 cut(s) 238
MflI RGATCY 1 cut(s) 803
MhlI GDGCHC 4 cut(s) 175, 578, 633, 977
MluCI AATT 8 cut(s) 238, 350, 597, 604, 762, 842, 957, 1046
MlyI GAGTC 5 cut(s) 66, 441, 601, 781, 903
MmeI TCCRAC 1 cut(s) 1038
MnlI CCTC 6 cut(s) 34, 116, 185, 410, 661, 813
MroXI GAANNNNTTC 1 cut(s) 134
MseI TTAA 1 cut(s) 790
MspA1I CMGCKG 1 cut(s) 1053
MspI CCGG 2 cut(s) 325, 780
MspR9I CCNGG 3 cut(s) 459, 993, 1018
MunI CAATTG 1 cut(s) 238
MvaI CCWGG 3 cut(s) 459, 993, 1018
MwoI GCNNNNNNNGC 3 cut(s) 170, 446, 628
NdeII GATC 2 cut(s) 803, 1060
NlaIII CATG 2 cut(s) 383, 582
NlaIV GGNNCC 1 cut(s) 456
NmuCI GTSAC 1 cut(s) 525
PaqCI CACCTGC 1 cut(s) 431
PciSI GCTCTTC 1 cut(s) 406
PdmI GAANNNNTTC 1 cut(s) 134
PfeI GAWTC 2 cut(s) 114, 225
PflFI GACNNNGTC 1 cut(s) 771
PleI GAGTC 5 cut(s) 65, 440, 600, 780, 903
PpsI GAGTC 5 cut(s) 65, 440, 600, 780, 903
Ppu21I YACGTR 1 cut(s) 234
PpuMI RGGWCCY 1 cut(s) 897
Psp124BI GAGCTC 1 cut(s) 175
Psp5II RGGWCCY 1 cut(s) 897
Psp6I CCWGG 3 cut(s) 457, 991, 1016
PspFI CCCAGC 2 cut(s) 195, 552
PspGI CCWGG 3 cut(s) 457, 991, 1016
PspN4I GGNNCC 1 cut(s) 456
PspPI GGNCC 4 cut(s) 836, 897, 966, 1020
PspPPI RGGWCCY 1 cut(s) 897
PstNI CAGNNNCTG 1 cut(s) 752
PsuI RGATCY 1 cut(s) 803
PsyI GACNNNGTC 1 cut(s) 771
PvuII CAGCTG 1 cut(s) 1053
RsaI GTAC 2 cut(s) 253, 296
RsaNI GTAC 2 cut(s) 252, 295
SacI GAGCTC 1 cut(s) 175
SalI GTCGAC 1 cut(s) 272
SapI GCTCTTC 1 cut(s) 406
SaqAI TTAA 1 cut(s) 790
Sau3AI GATC 2 cut(s) 803, 1060
Sau96I GGNCC 4 cut(s) 836, 897, 966, 1020
SchI GAGTC 5 cut(s) 66, 441, 601, 781, 903
ScrFI CCNGG 3 cut(s) 459, 993, 1018
SduI GDGCHC 4 cut(s) 175, 578, 633, 977
SfaNI GCATC 4 cut(s) 461, 551, 605, 938
SfcI CTRYAG 3 cut(s) 119, 178, 1041
SinI GGWCC 3 cut(s) 897, 966, 1020
Sse9I AATT 8 cut(s) 238, 350, 597, 604, 762, 842, 957, 1046
SsiI CCGC 2 cut(s) 834, 1023
SspMI CTAG 1 cut(s) 673
SstI GAGCTC 1 cut(s) 175
StyD4I CCNGG 3 cut(s) 457, 991, 1016
StyI CCWWGG 1 cut(s) 672
TaaI ACNGT 5 cut(s) 179, 251, 482, 573, 588
TaiI ACGT 3 cut(s) 236, 371, 870
TaqI TCGA 5 cut(s) 108, 273, 590, 657, 1063
TasI AATT 8 cut(s) 238, 350, 597, 604, 762, 842, 957, 1046
TfiI GAWTC 2 cut(s) 114, 225
Tru1I TTAA 1 cut(s) 790
Tru9I TTAA 1 cut(s) 790
TscAI CASTG 5 cut(s) 182, 361, 409, 576, 853
TseFI GTSAC 1 cut(s) 525
Tsp45I GTSAC 1 cut(s) 525
TspDTI ATGAA 1 cut(s) 379
TspRI CASTG 5 cut(s) 182, 361, 409, 576, 853
Tth111I GACNNNGTC 1 cut(s) 771
VneI GTGCAC 1 cut(s) 629
VpaK11BI GGWCC 3 cut(s) 897, 966, 1020
XapI RAATTY 4 cut(s) 604, 762, 842, 1046
XmaJI CCTAGG 1 cut(s) 672
XmiI GTMKAC 1 cut(s) 273
XmnI GAANNNNTTC 1 cut(s) 134
XspI CTAG 1 cut(s) 673
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.