Rmu_sc0022129.1_g000001

metal ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0022129.1
OG0000343
Physical Location & Seq
Reverse (-)
1 .. 3071
3071 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0022129.1_g000001.1.cds

Sequence Viewer

Length: 859 bp
atgagcccacattcagccactgtgggcacccaatttatcatcaggtcaccactgccatcacctgcaatgtcaccaccaatgtggaagcctccaacgccaccaccgaggcattccagatccctaacaaggattgaaacacaaacctcgcaattgggtttgcaaaggacatccaagcatctaggcaccaaagccttcatgcagccgcctccagcaacacgtctagctccacccgcgtcacatcctccgtcaaatctcgccagcaacctaacctccaacgtcgaacacgctcacaatcgaaccaggggttcttctgtgaatttggtcaggtgtaagttaaacaagggtatggcatcggcagagtgtctaccatattctgtttcggagtaccatttcgtagatgacaaggatgaatgtgtctcatttcatgtattgcctgttcaatggagtgatggtgagagactggatggtgagaaggtaaagatttttctgcgtggaaccgctgataatggggggaatttatgtaagcatgttgttgcatggaagtttgacatttcgagtgaagagcccgagatattggttctcctctccgaggaaaatagttggatcaagcttgggaagccgaggaagagctttgaggacactgttaggtcgatcttgataacggtgcactgccttcactatgtgaagagaaatcctgaaaaatccagagaatgtgtgtggaatcacctatctgaagttttcaggttgtatgtggtcaggccttctcaaagtgatctggtggatcacatgcctctaatcggtgattgtgttaacagatatcgtgccttagcggattccaaggtgtgcctggcttcttttg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006950 GO:0006952 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009791 GO:0009889 GO:0009893 GO:0009909 GO:0009911 GO:0009987 GO:0010228 GO:0010468 GO:0010556 GO:0010604 GO:0010638 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030154 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031326 GO:0031399 GO:0031401 GO:0031440 GO:0031935 GO:0031937 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0033043 GO:0033044 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043954 GO:0044030 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048468 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050684 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051052 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051276 GO:0051570 GO:0051574 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060968 GO:0061085 GO:0061087 GO:0061458 GO:0065007 GO:0070827 GO:0070828 GO:0070829 GO:0071840 GO:0080090 GO:0090436 GO:0097159 GO:0098542 GO:0099402 GO:0140110 GO:1900109 GO:1900111 GO:1900363 GO:1901363 GO:1902275 GO:1903311 GO:1903506 GO:1905269 GO:2000024 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNMT1-RFD

Protein Analysis

286

Amino Acids

32.06

Weight (kDa)

9.01

Isoelectric Point (pI)

59.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000343)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48090 AT5G48090 AT5G48090 AT5G55390 AT5G55390 AT5G55390
fragaria_vesca FvH4_3g23690 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160
malus_domestica MD03G1191000.v1.1 MD11G1207800.v1.1 MD11G1208000.v1.1
prunus_persica Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227600_v2.0.a1 Prupe.4G227700_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1
pyrus_communis pycom01g03400 pycom03g14420 pycom11g18100 pycom11g18140 pycom11g18150 pycom11g18160
rosa_chinensis RchiOBHm_Chr2g0145981 RchiOBHm_Chr4g0405241 RchiOBHm_Chr4g0405271 RchiOBHm_Chr5g0016201 RchiOBHm_Chr5g0041831 RchiOBHm_Chr5g0041871 RchiOBHm_Chr5g0041881 RchiOBHm_Chr5g0059241
rosa_laevigata RLG00000002117 RLG00000008861 RLG00000008862 RLG00000011000 RLG00000033216 RLG00000034097 RLG00000034101
rosa_multiflora Rmu_sc0000161.1_g000001 Rmu_sc0000861.1_g000040 Rmu_sc0007522.1_g000003 Rmu_sc0009443.1_g000015 Rmu_sc0022129.1_g000001 Rmu_sc0042315.1_g000001
rosa_roxburghii Rroxscaffold_1G00038660 Rroxscaffold_1G00038690 Rroxscaffold_5G00349560 Rroxscaffold_5G00349610 Rroxscaffold_6G00388370 Rroxscaffold_7G00188740
rosa_rugosa Rorug03G0199700 Rorug04G0055400 Rorug04G0055500 Rorug04G0055900 Rorug04G0056000 Rorug04G0056100 Rorug04G0056100 Rorug04G0056200 Rorug05G0195600 Rorug05G0195700 Rorug05G0195800 Rorug05G0195900 Rorug05G0196800 Rorug05G0385000
rosa_samantha Rh4AG129900 Rh4AG130100 Rh4BG124200 Rh4BG124400 Rh4BG124500 Rh4CG137200 Rh4CG137300 Rh4DG123500 Rh4DG123700 Rh5AG280800 Rh5AG281400 Rh5BG286700 Rh5BG287000 Rh5BG397800 Rh5CG318100 Rh5CG318600 Rh5CG421600 Rh5DG132300 Rh5DG132400 Rh5DG295400 Rh5DG295700 Rh7BG475300
rosa_wichuraiana Rw0G001330 Rw0G005730 Rw4G008670 Rw4G010510 Rw4G010540 Rw5G026450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 70
Acc36I ACCTGC 1 cut(s) 70
AccB1I GGYRCC 2 cut(s) 26, 182
AccI GTMKAC 1 cut(s) 364
AccII CGCG 1 cut(s) 233
AciI CCGC 4 cut(s) 203, 231, 498, 830
AclWI GGATC 3 cut(s) 111, 611, 789
AcsI RAATTY 2 cut(s) 316, 514
AcuI CTGAAG 1 cut(s) 753
AdeI CACNNNGTG 1 cut(s) 682
AfaI GTAC 1 cut(s) 386
AfiI CCNNNNNNNGG 3 cut(s) 126, 589, 797
AflIII ACRYGT 1 cut(s) 215
AgsI TTSAA 2 cut(s) 134, 440
AjiI CACGTC 1 cut(s) 218
AjnI CCWGG 2 cut(s) 299, 846
AleI CACNNNNGTG 1 cut(s) 79
AluBI AGCT 3 cut(s) 224, 610, 630
AluI AGCT 3 cut(s) 224, 610, 630
Alw21I GWGCWC 1 cut(s) 669
Alw26I GTCTC 2 cut(s) 421, 451
Alw44I GTGCAC 1 cut(s) 665
AlwI GGATC 3 cut(s) 111, 611, 789
AlwNI CAGNNNCTG 1 cut(s) 20
Ama87I CYCGRG 1 cut(s) 566
AoxI GGCC 1 cut(s) 758
ApaLI GTGCAC 1 cut(s) 665
ApeKI GCWGC 1 cut(s) 199
ApoI RAATTY 2 cut(s) 316, 514
AsuHPI GGTGA 7 cut(s) 39, 51, 63, 464, 479, 716, 812
AvaI CYCGRG 1 cut(s) 566
BaeGI GKGCMC 2 cut(s) 29, 669
BanI GGYRCC 2 cut(s) 26, 182
BanII GRGCYC 2 cut(s) 8, 567
Bbv12I GWGCWC 1 cut(s) 669
BbvI GCAGC 1 cut(s) 211
BccI CCATC 3 cut(s) 64, 443, 458
BciT130I CCWGG 2 cut(s) 301, 848
BcoDI GTCTC 2 cut(s) 421, 451
BfaI CTAG 2 cut(s) 179, 221
BfuAI ACCTGC 1 cut(s) 70
BisI GCNGC 2 cut(s) 200, 203
BlsI GCNGC 2 cut(s) 201, 204
Bme1390I CCNGG 2 cut(s) 301, 848
BmeT110I CYCGRG 1 cut(s) 566
BmgBI CACGTC 1 cut(s) 218
BmiI GGNNCC 3 cut(s) 28, 184, 496
BmrFI CCNGG 2 cut(s) 301, 848
BmsI GCATC 2 cut(s) 184, 359
BpmI CTGGAG 1 cut(s) 192
Bpu10I CCTNAGC 1 cut(s) 826
BsaJI CCNNGG 5 cut(s) 104, 300, 588, 620, 837
BsaXI ACNNNNNCTCC 4 cut(s) 254, 284, 436, 466
Bsc4I CCNNNNNNNGG 3 cut(s) 126, 589, 797
Bse1I ACTGG 1 cut(s) 465
Bse3DI GCAATG 1 cut(s) 72
BseBI CCWGG 2 cut(s) 301, 848
BseDI CCNNGG 5 cut(s) 104, 300, 588, 620, 837
BseGI GGATG 4 cut(s) 167, 238, 412, 469
BseLI CCNNNNNNNGG 3 cut(s) 126, 589, 797
BseMI GCAATG 1 cut(s) 72
BseNI ACTGG 1 cut(s) 465
BseRI GAGGAG 1 cut(s) 572
BseSI GKGCMC 2 cut(s) 29, 669
BseXI GCAGC 1 cut(s) 211
Bsh1236I CGCG 1 cut(s) 233
BshFI GGCC 1 cut(s) 760
BshNI GGYRCC 2 cut(s) 26, 182
BsiHKAI GWGCWC 1 cut(s) 669
BsiHKCI CYCGRG 1 cut(s) 566
BslI CCNNNNNNNGG 3 cut(s) 126, 589, 797
BsmAI GTCTC 2 cut(s) 421, 451
BsmI GAATGC 1 cut(s) 109
BsnI GGCC 1 cut(s) 760
BsoBI CYCGRG 1 cut(s) 566
Bsp1286I GDGCHC 4 cut(s) 8, 29, 567, 669
Bsp143I GATC 5 cut(s) 116, 603, 651, 772, 781
BspACI CCGC 4 cut(s) 203, 231, 498, 830
BspANI GGCC 1 cut(s) 760
BspFNI CGCG 1 cut(s) 233
BspLI GGNNCC 3 cut(s) 28, 184, 496
BspMI ACCTGC 1 cut(s) 70
BspPI GGATC 3 cut(s) 111, 611, 789
BspQI GCTCTTC 2 cut(s) 555, 620
BspT107I GGYRCC 2 cut(s) 26, 182
BsrDI GCAATG 1 cut(s) 72
BsrI ACTGG 1 cut(s) 465
BssECI CCNNGG 5 cut(s) 104, 300, 588, 620, 837
BssMI GATC 5 cut(s) 116, 603, 651, 772, 781
BssT1I CCWWGG 1 cut(s) 837
Bst2UI CCWGG 2 cut(s) 301, 848
Bst4CI ACNGT 3 cut(s) 22, 643, 664
Bst6I CTCTTC 3 cut(s) 555, 620, 680
BstC8I GCNNGC 1 cut(s) 259
BstDEI CTNAG 1 cut(s) 826
BstEII GGTNACC 1 cut(s) 45
BstENI CCTNNNNNAGG 1 cut(s) 587
BstF5I GGATG 4 cut(s) 167, 238, 412, 469
BstFNI CGCG 1 cut(s) 233
BstKTI GATC 5 cut(s) 119, 606, 654, 775, 784
BstMAI GTCTC 2 cut(s) 421, 451
BstMBI GATC 5 cut(s) 116, 603, 651, 772, 781
BstMWI GCNNNNNNNGC 3 cut(s) 94, 230, 616
BstNI CCWGG 2 cut(s) 301, 848
BstNSI RCATGY 2 cut(s) 530, 790
BstPI GGTNACC 1 cut(s) 45
BstSCI CCNGG 2 cut(s) 299, 846
BstSLI GKGCMC 2 cut(s) 29, 669
BstUI CGCG 1 cut(s) 233
BstV1I GCAGC 1 cut(s) 211
BstX2I RGATCY 1 cut(s) 116
BstXI CCANNNNNNTGG 1 cut(s) 81
BstYI RGATCY 1 cut(s) 116
BsuRI GGCC 1 cut(s) 760
BtrI CACGTC 1 cut(s) 218
BtsCI GGATG 4 cut(s) 167, 238, 412, 469
BtsI GCAGTG 2 cut(s) 50, 667
BtsIMutI CAGTG 4 cut(s) 18, 50, 639, 667
BveI ACCTGC 1 cut(s) 70
Cac8I GCNNGC 1 cut(s) 259
CaiI CAGNNNCTG 1 cut(s) 20
CseI GACGC 1 cut(s) 222
Csp6I GTAC 1 cut(s) 385
CviAII CATG 5 cut(s) 196, 425, 527, 537, 787
CviQI GTAC 1 cut(s) 385
DdeI CTNAG 1 cut(s) 826
DpnI GATC 5 cut(s) 118, 605, 653, 774, 783
DpnII GATC 5 cut(s) 116, 603, 651, 772, 781
DraIII CACNNNGTG 1 cut(s) 682
Eam1104I CTCTTC 3 cut(s) 555, 620, 680
EarI CTCTTC 3 cut(s) 555, 620, 680
Eco130I CCWWGG 1 cut(s) 837
Eco147I AGGCCT 1 cut(s) 760
Eco24I GRGCYC 2 cut(s) 8, 567
Eco32I GATATC 1 cut(s) 818
Eco57I CTGAAG 1 cut(s) 753
Eco88I CYCGRG 1 cut(s) 566
Eco91I GGTNACC 1 cut(s) 45
EcoNI CCTNNNNNAGG 1 cut(s) 587
EcoO65I GGTNACC 1 cut(s) 45
EcoRII CCWGG 2 cut(s) 299, 846
EcoRV GATATC 1 cut(s) 818
EcoT14I CCWWGG 1 cut(s) 837
EcoT38I GRGCYC 2 cut(s) 8, 567
ErhI CCWWGG 1 cut(s) 837
FaeI CATG 5 cut(s) 199, 428, 530, 540, 790
FatI CATG 5 cut(s) 195, 424, 526, 536, 786
FauI CCCGC 1 cut(s) 238
FblI GTMKAC 1 cut(s) 364
Fnu4HI GCNGC 2 cut(s) 200, 203
FokI GGATG 4 cut(s) 154, 225, 419, 476
FriOI GRGCYC 2 cut(s) 8, 567
Fsp4HI GCNGC 2 cut(s) 200, 203
FspBI CTAG 2 cut(s) 179, 221
GluI GCNGC 2 cut(s) 200, 203
GsuI CTGGAG 1 cut(s) 192
HaeIII GGCC 1 cut(s) 760
HgaI GACGC 1 cut(s) 222
Hin1II CATG 5 cut(s) 199, 428, 530, 540, 790
HincII GTYRAC 1 cut(s) 811
HindII GTYRAC 1 cut(s) 811
HindIII AAGCTT 1 cut(s) 608
HinfI GANTC 2 cut(s) 721, 833
HpaI GTTAAC 1 cut(s) 811
HphI GGTGA 7 cut(s) 39, 51, 63, 464, 479, 716, 812
Hpy166II GTNNAC 3 cut(s) 365, 667, 811
Hpy188I TCNGA 3 cut(s) 382, 589, 733
Hpy188III TCNNGA 4 cut(s) 114, 655, 695, 705
Hpy8I GTNNAC 3 cut(s) 365, 667, 811
Hpy99I CGWCG 1 cut(s) 281
HpyAV CCTTC 4 cut(s) 202, 466, 683, 771
HpyCH4III ACNGT 3 cut(s) 22, 643, 664
HpyCH4IV ACGT 2 cut(s) 217, 276
HpyCH4V TGCA 5 cut(s) 65, 160, 199, 536, 667
HpyF10VI GCNNNNNNNGC 3 cut(s) 94, 230, 616
HpyF3I CTNAG 1 cut(s) 826
HpySE526I ACGT 2 cut(s) 217, 276
Hsp92II CATG 5 cut(s) 199, 428, 530, 540, 790
KspAI GTTAAC 1 cut(s) 811
Kzo9I GATC 5 cut(s) 116, 603, 651, 772, 781
LguI GCTCTTC 2 cut(s) 555, 620
LmnI GCTCC 1 cut(s) 229
Lsp1109I GCAGC 1 cut(s) 211
LweI GCATC 2 cut(s) 184, 359
MaeI CTAG 2 cut(s) 179, 221
MaeII ACGT 2 cut(s) 217, 276
MaeIII GTNAC 3 cut(s) 45, 69, 234
MalI GATC 5 cut(s) 118, 605, 653, 774, 783
MboI GATC 5 cut(s) 116, 603, 651, 772, 781
MboII GAAGA 4 cut(s) 300, 572, 637, 697
MfeI CAATTG 1 cut(s) 149
MflI RGATCY 1 cut(s) 116
MhlI GDGCHC 4 cut(s) 8, 29, 567, 669
MluCI AATT 4 cut(s) 32, 149, 316, 514
MmeI TCCRAC 3 cut(s) 116, 297, 581
MseI TTAA 2 cut(s) 335, 810
MslI CAYNNNNRTG 1 cut(s) 79
MspA1I CMGCKG 1 cut(s) 500
MspR9I CCNGG 2 cut(s) 301, 848
MunI CAATTG 1 cut(s) 149
Mva1269I GAATGC 1 cut(s) 109
MvaI CCWGG 2 cut(s) 301, 848
MvnI CGCG 1 cut(s) 233
MwoI GCNNNNNNNGC 3 cut(s) 94, 230, 616
NdeII GATC 5 cut(s) 116, 603, 651, 772, 781
NlaIII CATG 5 cut(s) 199, 428, 530, 540, 790
NlaIV GGNNCC 3 cut(s) 28, 184, 496
NmeAIII GCCGAG 1 cut(s) 645
NmuCI GTSAC 3 cut(s) 45, 69, 234
NspI RCATGY 2 cut(s) 530, 790
OliI CACNNNNGTG 1 cut(s) 79
PaqCI CACCTGC 1 cut(s) 70
PceI AGGCCT 1 cut(s) 760
PciSI GCTCTTC 2 cut(s) 555, 620
PcsI WCGNNNNNNNCGW 1 cut(s) 101
PctI GAATGC 1 cut(s) 109
PfeI GAWTC 2 cut(s) 721, 833
PkrI GCNGC 2 cut(s) 201, 204
Psp6I CCWGG 2 cut(s) 299, 846
PspEI GGTNACC 1 cut(s) 45
PspGI CCWGG 2 cut(s) 299, 846
PspN4I GGNNCC 3 cut(s) 28, 184, 496
PsrI GAACNNNNNNTAC 2 cut(s) 420, 452
PstNI CAGNNNCTG 1 cut(s) 20
PsuI RGATCY 1 cut(s) 116
RsaI GTAC 1 cut(s) 386
RsaNI GTAC 1 cut(s) 385
RseI CAYNNNNRTG 1 cut(s) 79
SapI GCTCTTC 2 cut(s) 555, 620
SaqAI TTAA 2 cut(s) 335, 810
SatI GCNGC 2 cut(s) 200, 203
Sau3AI GATC 5 cut(s) 116, 603, 651, 772, 781
ScrFI CCNGG 2 cut(s) 301, 848
SduI GDGCHC 4 cut(s) 8, 29, 567, 669
SfaNI GCATC 2 cut(s) 184, 359
SmiMI CAYNNNNRTG 1 cut(s) 79
Sse9I AATT 4 cut(s) 32, 149, 316, 514
SseBI AGGCCT 1 cut(s) 760
SsiI CCGC 4 cut(s) 203, 231, 498, 830
SspMI CTAG 2 cut(s) 179, 221
StuI AGGCCT 1 cut(s) 760
StyD4I CCNGG 2 cut(s) 299, 846
StyI CCWWGG 1 cut(s) 837
TaaI ACNGT 3 cut(s) 22, 643, 664
TaiI ACGT 2 cut(s) 220, 279
TaqI TCGA 4 cut(s) 279, 295, 554, 650
TasI AATT 4 cut(s) 32, 149, 316, 514
TauI GCSGC 1 cut(s) 205
TfiI GAWTC 2 cut(s) 721, 833
Tru1I TTAA 2 cut(s) 335, 810
Tru9I TTAA 2 cut(s) 335, 810
TscAI CASTG 4 cut(s) 25, 57, 646, 674
TseFI GTSAC 3 cut(s) 45, 69, 234
TseI GCWGC 1 cut(s) 199
Tsp45I GTSAC 3 cut(s) 45, 69, 234
TspDTI ATGAA 3 cut(s) 184, 413, 423
TspGWI ACGGA 1 cut(s) 234
TspRI CASTG 4 cut(s) 25, 57, 646, 674
VneI GTGCAC 1 cut(s) 665
XagI CCTNNNNNAGG 1 cut(s) 587
XapI RAATTY 2 cut(s) 316, 514
XceI RCATGY 2 cut(s) 530, 790
XcmI CCANNNNNNNNNTGG 1 cut(s) 844
XmiI GTMKAC 1 cut(s) 364
XspI CTAG 2 cut(s) 179, 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.