Rroxscaffold_5G00349560

metal ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000343
Physical Location & Seq
Forward (+)
22582989 .. 22592131
9143 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00349560.1

Sequence Viewer

Length: 2073 bp
ATGGAGGCTGCCAACAACAGCCCCGGAATCAGAGAAGAAGGCGAGCTCTCTCCCGACGACGCTGACGACATTCAAGTTACTAAAAGGCTCAAATCTGTGGTTGATGATGTTGAAGATGGGTTCATTGATTATATGTTTGGCTATGTCTGCGCTTTGTGTCATGATGGCGGTGACCTCTTGTGTTGTGAAGGGAGGTGCCTAAGGTCATTTCATGCAACTCCAGAGACTGGTCAGGACTCTGGTTGCGTATCTCTTGGCTTTACGAAGGATGCAGTAGATGCAATGCCTAATTTCTTATGCCAGAACTGCAAACACAAACAACACCAGTGCTTTGTTTGTGGAGAGTTGGGATCTTCAGACAAATCTTCAGGTGCTGCTGAGGTTGTTCCCTGTGTTTCTCCGGTATGTGGTCAATTCTACCATCCACATTGTGTTGCAAAAGAACTTTCTCAAGATAATGGAGTTCCTGCTGAAGAACTTGAGAGAAAGATTTCAATGGGAGAATCTTTTACATGTCCAGTTCATAAGTGCCGCATTTGTAAACAAGGAGAAAATATTAAGGATCGCGGTTTACAATTTGCTGTGTGCATGCTCTGTCCCAAGTCATACCACAGGAAATGCCTGCCAAGTTTTATTCCTTTCGAAGACAAAGAAGGAACATGTGGTGAAGGAAAATTAGTAACAAGAGCTTGGGACGGAATAATGCCTAACCGTATACTAACATATTGCATAAAACACGAGGAAGATAAAACGACTAAAGTTTTTGTAAGGGACCACATAAAATTTCCTGCTGTTAAAGAGAAGAGGAAACTGACACCACAGTCTATTGTAGACAGAGAGCAAGTTGCGTCTATGATGATAAATCCTTCATTGGAAGAATCATACAGAGAAAGAACTGCAAACACAGAATTCAAACAGAAGGAGAAGCCATCTTTTGCTAGAAAGCGTGGAAATTTGGATGCACCTAATACAGATACAAAAAGGAGAATATTGGGTTTAATGGAAAAGGCTGCATCTTCAATAACCTTGAAAGATATATTAAGGAAGTACCCAGTTCCATCTCATACTTACTCCATGAAAAATGTTGTGGACACGAAAATGTCATTGGGAAAGGTGGAAGTCTCGATTGAGGCCGCTAGAACAGCATTGAGAAAACTAGATGAAGGGTGCAGTACCAAAGATGCAGAAGCCGTTTGTGGGCCTGAGGTTCTTAAACAGATATTTAGATGGAAGGTGGATGATTATTCTTTTTCTAGATCTTCTGTTAATGCTTTCCATGTGCCTGATATACTAGACTTAAGTATATCATGCTGTTGCCTACTTTTAGTTGTTATGTCAAGGATTATGCCTGGGTATAGGACCAGGGAATGCTCCGATGCCTCTGAGACAAAGATGAATGTTTATCTCAGTCCTTTCCTTCATGGCATGCGCTACACATCCTTTGGTCGCCATTTTACGAACGTGGAGAAACTAAAACAGATTGTAGATAAGCTCCATTGGTATGTGAAGACTGGAGATATGTGTCATTATGAAAAAAAGCTTGAAGAGATGGGAAAGAATTGCTACTACAAGAACTATGACCTTTTTCAAGCTAAGAATGATTTTAATTTCGAAAAGAAGGACTGGATGACTGTCCAGAGGGAGGAGCTACCCGTGGGATCTCGGTTGATCATGGGGCTGAACCCTCCTTTTGGAGTTAAAGCATCTCGGGCGAACCAGTTCATTGATAAGGCTCTCGGGTTTAATCCAAAGCTCCTAATTCTTATTGTTCCATCAGAAACACAAAGGCTGGATCAGAAGGCATCACCTTATGATCTGATTTGGGAGAATTCTCAGCTTCTATCAGGAAAGTCATTTTATCTACCTGGATCAGTTGATGTGAATGGTAAACATATAGACCAGCATAATGTGATTCCACCTCCTCTCTATCTCTGGAGTCGTCCTGATTGGTCTTCGGAACACTATGCTATAGCTCAAGAGCATGGTCACATTTCTATACCCCAGTCAGCAACGGTTGAGAACAGCAGCACTCATTTTGAAGACCGAATCAGGGTGCACAGATATGTTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006950 GO:0006952 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009791 GO:0009889 GO:0009893 GO:0009909 GO:0009911 GO:0009987 GO:0010228 GO:0010468 GO:0010556 GO:0010604 GO:0010638 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030154 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031326 GO:0031399 GO:0031401 GO:0031440 GO:0031935 GO:0031937 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0033043 GO:0033044 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043954 GO:0044030 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048468 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050684 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051052 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051276 GO:0051570 GO:0051574 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060968 GO:0061085 GO:0061087 GO:0061458 GO:0065007 GO:0070827 GO:0070828 GO:0070829 GO:0071840 GO:0080090 GO:0090436 GO:0097159 GO:0098542 GO:0099402 GO:0140110 GO:1900109 GO:1900111 GO:1900363 GO:1901363 GO:1902275 GO:1903311 GO:1903506 GO:1905269 GO:2000024 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNMT1-RFD

Protein Analysis

690

Amino Acids

78.17

Weight (kDa)

7.25

Isoelectric Point (pI)

46.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD_NSD PF22908 106 - 175 1.4e-18 Histone-lysine N-methyltransferase NSD-like, PHD zinc finger
Mtase_EDM2 PF26055 510 - 659 3.3e-75 EDM2 methyltransferase-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000343)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48090 AT5G48090 AT5G48090 AT5G55390 AT5G55390 AT5G55390
fragaria_vesca FvH4_3g23690 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160
malus_domestica MD03G1191000.v1.1 MD11G1207800.v1.1 MD11G1208000.v1.1
prunus_persica Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227600_v2.0.a1 Prupe.4G227700_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1
pyrus_communis pycom01g03400 pycom03g14420 pycom11g18100 pycom11g18140 pycom11g18150 pycom11g18160
rosa_chinensis RchiOBHm_Chr2g0145981 RchiOBHm_Chr4g0405241 RchiOBHm_Chr4g0405271 RchiOBHm_Chr5g0016201 RchiOBHm_Chr5g0041831 RchiOBHm_Chr5g0041871 RchiOBHm_Chr5g0041881 RchiOBHm_Chr5g0059241
rosa_laevigata RLG00000002117 RLG00000008861 RLG00000008862 RLG00000011000 RLG00000033216 RLG00000034097 RLG00000034101
rosa_multiflora Rmu_sc0000161.1_g000001 Rmu_sc0000861.1_g000040 Rmu_sc0007522.1_g000003 Rmu_sc0009443.1_g000015 Rmu_sc0022129.1_g000001 Rmu_sc0042315.1_g000001
rosa_roxburghii Rroxscaffold_1G00038660 Rroxscaffold_1G00038690 Rroxscaffold_5G00349560 Rroxscaffold_5G00349610 Rroxscaffold_6G00388370 Rroxscaffold_7G00188740
rosa_rugosa Rorug03G0199700 Rorug04G0055400 Rorug04G0055500 Rorug04G0055900 Rorug04G0056000 Rorug04G0056100 Rorug04G0056100 Rorug04G0056200 Rorug05G0195600 Rorug05G0195700 Rorug05G0195800 Rorug05G0195900 Rorug05G0196800 Rorug05G0385000
rosa_samantha Rh4AG129900 Rh4AG130100 Rh4BG124200 Rh4BG124400 Rh4BG124500 Rh4CG137200 Rh4CG137300 Rh4DG123500 Rh4DG123700 Rh5AG280800 Rh5AG281400 Rh5BG286700 Rh5BG287000 Rh5BG397800 Rh5CG318100 Rh5CG318600 Rh5CG421600 Rh5DG132300 Rh5DG132400 Rh5DG295400 Rh5DG295700 Rh7BG475300
rosa_wichuraiana Rw0G001330 Rw0G005730 Rw4G008670 Rw4G010510 Rw4G010540 Rw5G026450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 820
AccB1I GGYRCC 1 cut(s) 195
AccB7I CCANNNNNTGG 1 cut(s) 227
AccI GTMKAC 2 cut(s) 715, 831
AccII CGCG 1 cut(s) 567
AciI CCGC 4 cut(s) 168, 532, 567, 1134
AclWI GGATC 5 cut(s) 358, 570, 1666, 1800, 1876
AcsI RAATTY 4 cut(s) 782, 908, 952, 1828
AcuI CTGAAG 3 cut(s) 339, 351, 492
AdeI CACNNNGTG 1 cut(s) 431
AfaI GTAC 2 cut(s) 1049, 1174
AfiI CCNNNNNNNGG 6 cut(s) 227, 407, 1197, 1642, 1691, 2050
AflII CTTAAG 1 cut(s) 1297
AflIII ACRYGT 2 cut(s) 512, 659
AgsI TTSAA 9 cut(s) 74, 113, 495, 913, 1020, 1030, 1544, 1589, 2039
AjnI CCWGG 3 cut(s) 1348, 1361, 1864
AjuI GAANNNNNNNTTGG 2 cut(s) 1088, 1120
AluBI AGCT 9 cut(s) 46, 689, 1492, 1540, 1592, 1648, 1753, 1837, 1973
AluI AGCT 9 cut(s) 46, 689, 1492, 1540, 1592, 1648, 1753, 1837, 1973
Alw21I GWGCWC 2 cut(s) 48, 2058
Alw26I GTCTC 3 cut(s) 218, 1126, 1379
Alw44I GTGCAC 1 cut(s) 2054
AlwI GGATC 5 cut(s) 358, 570, 1666, 1800, 1876
AlwNI CAGNNNCTG 2 cut(s) 227, 374
Ama87I CYCGRG 2 cut(s) 1707, 1736
AoxI GGCC 2 cut(s) 1131, 1199
ApaLI GTGCAC 1 cut(s) 2054
ApeKI GCWGC 4 cut(s) 8, 374, 1010, 2025
ApoI RAATTY 4 cut(s) 782, 908, 952, 1828
Asp700I GAANNNNTTC 2 cut(s) 490, 1718
AspLEI GCGC 2 cut(s) 152, 1431
AspS9I GGNCC 3 cut(s) 772, 1199, 1359
AsuC2I CCSGG 1 cut(s) 24
AsuHPI GGTGA 3 cut(s) 182, 677, 1797
AsuII TTCGAA 2 cut(s) 642, 1611
AvaI CYCGRG 2 cut(s) 1707, 1736
AvaII GGWCC 2 cut(s) 772, 1359
AxyI CCTNAGG 2 cut(s) 200, 1203
BaeGI GKGCMC 1 cut(s) 2058
BanI GGYRCC 1 cut(s) 195
BanII GRGCYC 1 cut(s) 48
BauI CACGAG 1 cut(s) 737
BbsI GAAGAC 4 cut(s) 651, 1514, 1944, 2046
Bbv12I GWGCWC 2 cut(s) 48, 2058
BbvCI CCTCAGC 1 cut(s) 378
BbvI GCAGC 3 cut(s) 361, 997, 2037
BccI CCATC 8 cut(s) 110, 158, 429, 937, 1066, 1221, 1543, 1780
BceAI ACGGC 1 cut(s) 1175
BciT130I CCWGG 3 cut(s) 1350, 1363, 1866
BclI TGATCA 1 cut(s) 1668
BcnI CCSGG 1 cut(s) 24
BcoDI GTCTC 3 cut(s) 218, 1126, 1379
BfaI CTAG 5 cut(s) 939, 1137, 1157, 1254, 1292
BfmI CTRYAG 1 cut(s) 1968
BfrI CTTAAG 1 cut(s) 1297
BglII AGATCT 1 cut(s) 1256
BisI GCNGC 6 cut(s) 9, 375, 532, 1011, 1134, 2026
BlsI GCNGC 6 cut(s) 10, 376, 533, 1012, 1135, 2027
Bme1390I CCNGG 4 cut(s) 24, 1350, 1363, 1866
Bme18I GGWCC 2 cut(s) 772, 1359
BmeT110I CYCGRG 2 cut(s) 1707, 1736
BmgT120I GGNCC 3 cut(s) 772, 1199, 1359
BmiI GGNNCC 2 cut(s) 197, 773
BmrFI CCNGG 4 cut(s) 24, 1350, 1363, 1866
BmrI ACTGGG 2 cut(s) 1046, 1996
BmsI GCATC 8 cut(s) 259, 268, 949, 1022, 1171, 1366, 1712, 1811
BmuI ACTGGG 2 cut(s) 1046, 1996
BpiI GAAGAC 4 cut(s) 651, 1514, 1944, 2046
BpmI CTGGAG 3 cut(s) 204, 1533, 1954
Bpu10I CCTNAGC 1 cut(s) 378
Bpu14I TTCGAA 2 cut(s) 642, 1611
BpuEI CTTGAG 3 cut(s) 435, 500, 1959
BpuMI CCSGG 1 cut(s) 24
BsaJI CCNNGG 4 cut(s) 22, 1349, 1362, 1653
BsaWI WCCGGW 1 cut(s) 400
Bsc4I CCNNNNNNNGG 6 cut(s) 227, 407, 1197, 1642, 1691, 2050
Bse1I ACTGG 8 cut(s) 232, 325, 518, 1052, 1516, 1628, 1717, 2002
Bse21I CCTNAGG 2 cut(s) 200, 1203
Bse3DI GCAATG 1 cut(s) 288
BseBI CCWGG 3 cut(s) 1350, 1363, 1866
BseDI CCNNGG 4 cut(s) 22, 1349, 1362, 1653
BseGI GGATG 6 cut(s) 274, 421, 964, 1243, 1436, 1632
BseLI CCNNNNNNNGG 6 cut(s) 227, 407, 1197, 1642, 1691, 2050
BseMI GCAATG 1 cut(s) 288
BseMII CTCAG 5 cut(s) 369, 1194, 1374, 1420, 1847
BseNI ACTGG 8 cut(s) 232, 325, 518, 1052, 1516, 1628, 1717, 2002
BseRI GAGGAG 2 cut(s) 1658, 1911
BseSI GKGCMC 1 cut(s) 2058
BseXI GCAGC 3 cut(s) 361, 997, 2037
BsgI GTGCAG 1 cut(s) 1189
Bsh1236I CGCG 1 cut(s) 567
BshFI GGCC 2 cut(s) 1133, 1201
BshNI GGYRCC 1 cut(s) 195
BsiHKAI GWGCWC 2 cut(s) 48, 2058
BsiHKCI CYCGRG 2 cut(s) 1707, 1736
BsiSI CCGG 2 cut(s) 24, 401
BslFI GGGAC 3 cut(s) 582, 707, 785
BslI CCNNNNNNNGG 6 cut(s) 227, 407, 1197, 1642, 1691, 2050
BsmAI GTCTC 3 cut(s) 218, 1126, 1379
BsmFI GGGAC 3 cut(s) 582, 707, 785
BsmI GAATGC 1 cut(s) 1373
BsnI GGCC 2 cut(s) 1133, 1201
BsoBI CYCGRG 2 cut(s) 1707, 1736
Bsp119I TTCGAA 2 cut(s) 642, 1611
Bsp1286I GDGCHC 2 cut(s) 48, 2058
Bsp143I GATC 8 cut(s) 350, 562, 1256, 1658, 1668, 1792, 1813, 1868
BspACI CCGC 4 cut(s) 168, 532, 567, 1134
BspANI GGCC 2 cut(s) 1133, 1201
BspCNI CTCAG 5 cut(s) 370, 1195, 1375, 1419, 1846
BspFNI CGCG 1 cut(s) 567
BspHI TCATGA 1 cut(s) 160
BspLI GGNNCC 2 cut(s) 197, 773
BspPI GGATC 5 cut(s) 358, 570, 1666, 1800, 1876
BspT104I TTCGAA 2 cut(s) 642, 1611
BspT107I GGYRCC 1 cut(s) 195
BspTI CTTAAG 1 cut(s) 1297
BsrDI GCAATG 1 cut(s) 288
BsrI ACTGG 8 cut(s) 232, 325, 518, 1052, 1516, 1628, 1717, 2002
BssECI CCNNGG 4 cut(s) 22, 1349, 1362, 1653
BssMI GATC 8 cut(s) 350, 562, 1256, 1658, 1668, 1792, 1813, 1868
BssNAI GTATAC 1 cut(s) 716
BssSI CACGAG 1 cut(s) 737
Bst1107I GTATAC 1 cut(s) 716
Bst2BI CACGAG 1 cut(s) 737
Bst2UI CCWGG 3 cut(s) 1350, 1363, 1866
Bst4CI ACNGT 4 cut(s) 713, 822, 1633, 2014
Bst6I CTCTTC 2 cut(s) 797, 1539
BstAFI CTTAAG 1 cut(s) 1297
BstAPI GCANNNNNTGC 1 cut(s) 278
BstBI TTCGAA 2 cut(s) 642, 1611
BstC8I GCNNGC 4 cut(s) 44, 590, 623, 1427
BstDEI CTNAG 7 cut(s) 200, 378, 1203, 1383, 1406, 1593, 1833
BstDSI CCRYGG 1 cut(s) 1653
BstEII GGTNACC 1 cut(s) 170
BstF5I GGATG 6 cut(s) 274, 421, 964, 1243, 1436, 1632
BstFNI CGCG 1 cut(s) 567
BstHHI GCGC 2 cut(s) 152, 1431
BstKTI GATC 8 cut(s) 353, 565, 1259, 1661, 1671, 1795, 1816, 1871
BstMAI GTCTC 3 cut(s) 218, 1126, 1379
BstMBI GATC 8 cut(s) 350, 562, 1256, 1658, 1668, 1792, 1813, 1868
BstMWI GCNNNNNNNGC 5 cut(s) 147, 278, 306, 1142, 1709
BstNI CCWGG 3 cut(s) 1350, 1363, 1866
BstNSI RCATGY 4 cut(s) 516, 592, 663, 1429
BstPI GGTNACC 1 cut(s) 170
BstSCI CCNGG 4 cut(s) 22, 1348, 1361, 1864
BstSFI CTRYAG 1 cut(s) 1968
BstSLI GKGCMC 1 cut(s) 2058
BstUI CGCG 1 cut(s) 567
BstV1I GCAGC 3 cut(s) 361, 997, 2037
BstV2I GAAGAC 4 cut(s) 651, 1514, 1944, 2046
BstX2I RGATCY 3 cut(s) 350, 1256, 1658
BstYI RGATCY 3 cut(s) 350, 1256, 1658
BstZ17I GTATAC 1 cut(s) 716
Bsu36I CCTNAGG 2 cut(s) 200, 1203
BsuRI GGCC 2 cut(s) 1133, 1201
BtgI CCRYGG 1 cut(s) 1653
BtsCI GGATG 6 cut(s) 274, 421, 964, 1243, 1436, 1632
BtsIMutI CAGTG 1 cut(s) 332
Cac8I GCNNGC 4 cut(s) 44, 590, 623, 1427
CaiI CAGNNNCTG 2 cut(s) 227, 374
CciI TCATGA 1 cut(s) 160
CfoI GCGC 2 cut(s) 152, 1431
Cfr13I GGNCC 3 cut(s) 772, 1199, 1359
CseI GACGC 2 cut(s) 68, 837
Csp6I GTAC 2 cut(s) 1048, 1173
CviQI GTAC 2 cut(s) 1048, 1173
DdeI CTNAG 7 cut(s) 200, 378, 1203, 1383, 1406, 1593, 1833
DpnI GATC 8 cut(s) 352, 564, 1258, 1660, 1670, 1794, 1815, 1870
DpnII GATC 8 cut(s) 350, 562, 1256, 1658, 1668, 1792, 1813, 1868
DraIII CACNNNGTG 1 cut(s) 431
DrdI GACNNNNNNGTC 1 cut(s) 820
DseDI GACNNNNNNGTC 1 cut(s) 820
Eam1104I CTCTTC 2 cut(s) 797, 1539
EarI CTCTTC 2 cut(s) 797, 1539
Ecl136II GAGCTC 1 cut(s) 46
Eco24I GRGCYC 1 cut(s) 48
Eco47I GGWCC 2 cut(s) 772, 1359
Eco53kI GAGCTC 1 cut(s) 46
Eco57I CTGAAG 3 cut(s) 339, 351, 492
Eco81I CCTNAGG 2 cut(s) 200, 1203
Eco88I CYCGRG 2 cut(s) 1707, 1736
Eco91I GGTNACC 1 cut(s) 170
EcoICRI GAGCTC 1 cut(s) 46
EcoO65I GGTNACC 1 cut(s) 170
EcoRI GAATTC 2 cut(s) 908, 1828
EcoRII CCWGG 3 cut(s) 1348, 1361, 1864
EcoT38I GRGCYC 1 cut(s) 48
FaqI GGGAC 3 cut(s) 582, 707, 785
FbaI TGATCA 1 cut(s) 1668
FblI GTMKAC 2 cut(s) 715, 831
Fnu4HI GCNGC 6 cut(s) 9, 375, 532, 1011, 1134, 2026
FokI GGATG 6 cut(s) 281, 408, 971, 1250, 1423, 1639
FriOI GRGCYC 1 cut(s) 48
Fsp4HI GCNGC 6 cut(s) 9, 375, 532, 1011, 1134, 2026
FspBI CTAG 5 cut(s) 939, 1137, 1157, 1254, 1292
GlaI GCGC 2 cut(s) 151, 1430
GluI GCNGC 6 cut(s) 9, 375, 532, 1011, 1134, 2026
GsuI CTGGAG 3 cut(s) 204, 1533, 1954
HaeIII GGCC 2 cut(s) 1133, 1201
HapII CCGG 2 cut(s) 24, 401
HgaI GACGC 2 cut(s) 68, 837
HhaI GCGC 2 cut(s) 152, 1431
Hin6I GCGC 2 cut(s) 150, 1429
HinP1I GCGC 2 cut(s) 150, 1429
HindIII AAGCTT 1 cut(s) 1538
HinfI GANTC 7 cut(s) 27, 236, 503, 878, 1912, 1936, 2046
HpaII CCGG 2 cut(s) 24, 401
HphI GGTGA 3 cut(s) 182, 677, 1797
Hpy166II GTNNAC 7 cut(s) 542, 572, 716, 832, 1090, 1889, 2056
Hpy188I TCNGA 8 cut(s) 32, 358, 1375, 1384, 1777, 1797, 1818, 1957
Hpy8I GTNNAC 7 cut(s) 542, 572, 716, 832, 1090, 1889, 2056
Hpy99I CGWCG 2 cut(s) 59, 62
HpyCH4III ACNGT 4 cut(s) 713, 822, 1633, 2014
HpyCH4IV ACGT 1 cut(s) 1461
HpyF10VI GCNNNNNNNGC 5 cut(s) 147, 278, 306, 1142, 1709
HpyF3I CTNAG 7 cut(s) 200, 378, 1203, 1383, 1406, 1593, 1833
HpySE526I ACGT 1 cut(s) 1461
HspAI GCGC 2 cut(s) 150, 1429
Ksp22I TGATCA 1 cut(s) 1668
Kzo9I GATC 8 cut(s) 350, 562, 1256, 1658, 1668, 1792, 1813, 1868
LmnI GCTCC 4 cut(s) 1376, 1497, 1645, 1758
Lsp1109I GCAGC 3 cut(s) 361, 997, 2037
LweI GCATC 8 cut(s) 259, 268, 949, 1022, 1171, 1366, 1712, 1811
MaeI CTAG 5 cut(s) 939, 1137, 1157, 1254, 1292
MaeII ACGT 1 cut(s) 1461
MaeIII GTNAC 4 cut(s) 76, 170, 679, 1985
MalI GATC 8 cut(s) 352, 564, 1258, 1660, 1670, 1794, 1815, 1870
MboI GATC 8 cut(s) 350, 562, 1256, 1658, 1668, 1792, 1813, 1868
MflI RGATCY 3 cut(s) 350, 1256, 1658
MhlI GDGCHC 2 cut(s) 48, 2058
MlyI GAGTC 2 cut(s) 230, 1945
MroXI GAANNNNTTC 2 cut(s) 490, 1718
MslI CAYNNNNRTG 3 cut(s) 1097, 1500, 2061
MspCI CTTAAG 1 cut(s) 1297
MspI CCGG 2 cut(s) 24, 401
MspR9I CCNGG 4 cut(s) 24, 1350, 1363, 1866
Mva1269I GAATGC 1 cut(s) 1373
MvaI CCWGG 3 cut(s) 1350, 1363, 1866
MvnI CGCG 1 cut(s) 567
MwoI GCNNNNNNNGC 5 cut(s) 147, 278, 306, 1142, 1709
NciI CCSGG 1 cut(s) 24
NdeII GATC 8 cut(s) 350, 562, 1256, 1658, 1668, 1792, 1813, 1868
NlaIV GGNNCC 2 cut(s) 197, 773
NmuCI GTSAC 2 cut(s) 170, 1985
NspI RCATGY 4 cut(s) 516, 592, 663, 1429
NspV TTCGAA 2 cut(s) 642, 1611
PaeI GCATGC 2 cut(s) 592, 1429
PagI TCATGA 1 cut(s) 160
PciI ACATGT 2 cut(s) 512, 659
PcsI WCGNNNNNNNCGW 1 cut(s) 63
PctI GAATGC 1 cut(s) 1373
PdmI GAANNNNTTC 2 cut(s) 490, 1718
PfeI GAWTC 5 cut(s) 27, 503, 878, 1912, 2046
PflMI CCANNNNNTGG 1 cut(s) 227
PkrI GCNGC 6 cut(s) 10, 376, 533, 1012, 1135, 2027
PleI GAGTC 2 cut(s) 230, 1944
PpsI GAGTC 2 cut(s) 230, 1944
PscI ACATGT 2 cut(s) 512, 659
Psp124BI GAGCTC 1 cut(s) 48
Psp6I CCWGG 3 cut(s) 1348, 1361, 1864
PspEI GGTNACC 1 cut(s) 170
PspGI CCWGG 3 cut(s) 1348, 1361, 1864
PspN4I GGNNCC 2 cut(s) 197, 773
PspPI GGNCC 3 cut(s) 772, 1199, 1359
PstNI CAGNNNCTG 2 cut(s) 227, 374
PsuI RGATCY 3 cut(s) 350, 1256, 1658
RsaI GTAC 2 cut(s) 1049, 1174
RsaNI GTAC 2 cut(s) 1048, 1173
RseI CAYNNNNRTG 3 cut(s) 1097, 1500, 2061
SacI GAGCTC 1 cut(s) 48
SatI GCNGC 6 cut(s) 9, 375, 532, 1011, 1134, 2026
Sau3AI GATC 8 cut(s) 350, 562, 1256, 1658, 1668, 1792, 1813, 1868
Sau96I GGNCC 3 cut(s) 772, 1199, 1359
SchI GAGTC 2 cut(s) 230, 1945
ScrFI CCNGG 4 cut(s) 24, 1350, 1363, 1866
SduI GDGCHC 2 cut(s) 48, 2058
SfaNI GCATC 8 cut(s) 259, 268, 949, 1022, 1171, 1366, 1712, 1811
SfcI CTRYAG 1 cut(s) 1968
SfuI TTCGAA 2 cut(s) 642, 1611
SinI GGWCC 2 cut(s) 772, 1359
SmiMI CAYNNNNRTG 3 cut(s) 1097, 1500, 2061
SmlI CTYRAG 4 cut(s) 450, 479, 1297, 1974
SmoI CTYRAG 4 cut(s) 450, 479, 1297, 1974
SphI GCATGC 2 cut(s) 592, 1429
SsiI CCGC 4 cut(s) 168, 532, 567, 1134
SspI AATATT 2 cut(s) 556, 990
SspMI CTAG 5 cut(s) 939, 1137, 1157, 1254, 1292
SstI GAGCTC 1 cut(s) 48
StyD4I CCNGG 4 cut(s) 22, 1348, 1361, 1864
TaaI ACNGT 4 cut(s) 713, 822, 1633, 2014
TaiI ACGT 1 cut(s) 1464
TaqI TCGA 3 cut(s) 642, 1124, 1611
TaqII GACCGA 1 cut(s) 2058
TauI GCSGC 2 cut(s) 534, 1136
TfiI GAWTC 5 cut(s) 27, 503, 878, 1912, 2046
TscAI CASTG 1 cut(s) 332
TseFI GTSAC 2 cut(s) 170, 1985
TseI GCWGC 4 cut(s) 8, 374, 1010, 2025
Tsp45I GTSAC 2 cut(s) 170, 1985
TspGWI ACGGA 1 cut(s) 711
TspRI CASTG 1 cut(s) 332
Van91I CCANNNNNTGG 1 cut(s) 227
Vha464I CTTAAG 1 cut(s) 1297
VneI GTGCAC 1 cut(s) 2054
VpaK11BI GGWCC 2 cut(s) 772, 1359
XapI RAATTY 4 cut(s) 782, 908, 952, 1828
XbaI TCTAGA 1 cut(s) 1253
XceI RCATGY 4 cut(s) 516, 592, 663, 1429
XmiI GTMKAC 2 cut(s) 715, 831
XmnI GAANNNNTTC 2 cut(s) 490, 1718
XspI CTAG 5 cut(s) 939, 1137, 1157, 1254, 1292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.