Rw0G005730

metal ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00225
OG0000343
Physical Location & Seq
Reverse (-)
13493 .. 15646
2154 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G005730.1

Sequence Viewer

Length: 729 bp
ATGAAGGCGGCGGAACCCGCGAAATCGTGTGACGGAGATGCCGAGGAAAGCAATTCCTTGAGCCTTGGCCCGGTTGGGGATTACAGGTTGCATTGTGAAGGGCGATGCCTAAGGTCCTTTCATGCAACTGTAAAGGACGGTGAGGGCTTTACTTGTGAATCTCTTAGATTTTCCCAGGATGAAGTAGATAACTGTCAATATAAACAGCATCAGTGCTATGCTTGTGGGAAGTTAGGATCCTCGGACAAATCTTTAGGTGCTGAGGTCTTCCCCTGCACTTCTGCAAGGTGTGGTCAGTTTTATCATCCTCATTGTATTGCAAAATTAAGATATCATGAGACCGGAGTTTCTGCAGAAGAACTTGAGAAAAGAATTATGCTGGGGGAATCTTTTACATGTCCAATTCACAAGTGCTGGTTTTGTAAGCAAGGAGAGAATAAGAAGGATCCTGAATTGCAGTTTGCTGTGTGTAGGCGTTGTCCTACATCCTACCACCGTAAATGCTTGCCACGGGACATTCGTTTTGCAAAAGGCAAGGAAGGTGATGAGGAAGACATGGATACAAGAGCTTGGGAAGGTCTATTACCTGACCGTGTGCTAATATATTGCATGTACTTGCAAAAGCACAGCTTTGACTCTATGTTTATTCTGAAGGCATTCACTTACAAACATTGTTCTAAAAGTTCATCAAGTGATAATATCTACAGCCAATCAAAGCAGCACAACATG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006950 GO:0006952 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009791 GO:0009889 GO:0009893 GO:0009909 GO:0009911 GO:0009987 GO:0010228 GO:0010468 GO:0010556 GO:0010604 GO:0010638 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030154 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031326 GO:0031399 GO:0031401 GO:0031440 GO:0031935 GO:0031937 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0033043 GO:0033044 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043954 GO:0044030 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048468 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050684 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051052 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051276 GO:0051570 GO:0051574 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060968 GO:0061085 GO:0061087 GO:0061458 GO:0065007 GO:0070827 GO:0070828 GO:0070829 GO:0071840 GO:0080090 GO:0090436 GO:0097159 GO:0098542 GO:0099402 GO:0140110 GO:1900109 GO:1900111 GO:1900363 GO:1901363 GO:1902275 GO:1903311 GO:1903506 GO:1905269 GO:2000024 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNMT1-RFD

Protein Analysis

243

Amino Acids

27.73

Weight (kDa)

7.1

Isoelectric Point (pI)

56.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD_NSD PF22908 68 - 136 1.5e-19 Histone-lysine N-methyltransferase NSD-like, PHD zinc finger
PHDvar_NSD PF23004 138 - 175 1.6e-06 Histone-lysine N-methyltransferase NSD-like, variant PHD zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000343)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48090 AT5G48090 AT5G48090 AT5G55390 AT5G55390 AT5G55390
fragaria_vesca FvH4_3g23690 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160
malus_domestica MD03G1191000.v1.1 MD11G1207800.v1.1 MD11G1208000.v1.1
prunus_persica Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227600_v2.0.a1 Prupe.4G227700_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1
pyrus_communis pycom01g03400 pycom03g14420 pycom11g18100 pycom11g18140 pycom11g18150 pycom11g18160
rosa_chinensis RchiOBHm_Chr2g0145981 RchiOBHm_Chr4g0405241 RchiOBHm_Chr4g0405271 RchiOBHm_Chr5g0016201 RchiOBHm_Chr5g0041831 RchiOBHm_Chr5g0041871 RchiOBHm_Chr5g0041881 RchiOBHm_Chr5g0059241
rosa_laevigata RLG00000002117 RLG00000008861 RLG00000008862 RLG00000011000 RLG00000033216 RLG00000034097 RLG00000034101
rosa_multiflora Rmu_sc0000161.1_g000001 Rmu_sc0000861.1_g000040 Rmu_sc0007522.1_g000003 Rmu_sc0009443.1_g000015 Rmu_sc0022129.1_g000001 Rmu_sc0042315.1_g000001
rosa_roxburghii Rroxscaffold_1G00038660 Rroxscaffold_1G00038690 Rroxscaffold_5G00349560 Rroxscaffold_5G00349610 Rroxscaffold_6G00388370 Rroxscaffold_7G00188740
rosa_rugosa Rorug03G0199700 Rorug04G0055400 Rorug04G0055500 Rorug04G0055900 Rorug04G0056000 Rorug04G0056100 Rorug04G0056100 Rorug04G0056200 Rorug05G0195600 Rorug05G0195700 Rorug05G0195800 Rorug05G0195900 Rorug05G0196800 Rorug05G0385000
rosa_samantha Rh4AG129900 Rh4AG130100 Rh4BG124200 Rh4BG124400 Rh4BG124500 Rh4CG137200 Rh4CG137300 Rh4DG123500 Rh4DG123700 Rh5AG280800 Rh5AG281400 Rh5BG286700 Rh5BG287000 Rh5BG397800 Rh5CG318100 Rh5CG318600 Rh5CG421600 Rh5DG132300 Rh5DG132400 Rh5DG295400 Rh5DG295700 Rh7BG475300
rosa_wichuraiana Rw0G001330 Rw0G005730 Rw4G008670 Rw4G010510 Rw4G010540 Rw5G026450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 20
AciI CCGC 3 cut(s) 8, 11, 18
AclWI GGATC 4 cut(s) 231, 244, 440, 453
AcuI CTGAAG 1 cut(s) 671
AfaI GTAC 1 cut(s) 614
AfiI CCNNNNNNNGG 2 cut(s) 70, 76
AflIII ACRYGT 1 cut(s) 395
AjnI CCWGG 1 cut(s) 174
AluBI AGCT 2 cut(s) 569, 630
AluI AGCT 2 cut(s) 569, 630
Alw26I GTCTC 1 cut(s) 332
AlwI GGATC 4 cut(s) 231, 244, 440, 453
AoxI GGCC 1 cut(s) 67
ApeKI GCWGC 1 cut(s) 718
ArsI GACNNNNNNTTYG 2 cut(s) 506, 538
Asp700I GAANNNNTTC 1 cut(s) 656
AspS9I GGNCC 2 cut(s) 68, 114
AsuC2I CCSGG 1 cut(s) 71
AsuHPI GGTGA 2 cut(s) 152, 554
AvaII GGWCC 1 cut(s) 114
AxyI CCTNAGG 1 cut(s) 110
BamHI GGATCC 2 cut(s) 236, 445
BarI GAAGNNNNNNTAC 2 cut(s) 567, 599
BbsI GAAGAC 2 cut(s) 259, 558
BbvCI CCTCAGC 1 cut(s) 261
BciT130I CCWGG 1 cut(s) 176
BciVI GTATCC 1 cut(s) 553
BcnI CCSGG 1 cut(s) 71
BcoDI GTCTC 1 cut(s) 332
BfmI CTRYAG 2 cut(s) 351, 703
BfuI GTATCC 1 cut(s) 553
BisI GCNGC 2 cut(s) 9, 719
BlsI GCNGC 2 cut(s) 10, 720
Bme1390I CCNGG 2 cut(s) 71, 176
Bme18I GGWCC 1 cut(s) 114
BmgT120I GGNCC 2 cut(s) 68, 114
BmiI GGNNCC 3 cut(s) 15, 238, 447
BmrFI CCNGG 2 cut(s) 71, 176
BmsI GCATC 3 cut(s) 28, 95, 217
BpiI GAAGAC 2 cut(s) 259, 558
Bpu10I CCTNAGC 1 cut(s) 261
BpuEI CTTGAG 2 cut(s) 79, 383
BpuMI CCSGG 1 cut(s) 71
BsaI GGTCTC 1 cut(s) 332
BsaJI CCNNGG 5 cut(s) 42, 64, 174, 240, 509
BsaWI WCCGGW 1 cut(s) 341
Bsc4I CCNNNNNNNGG 2 cut(s) 70, 76
Bse21I CCTNAGG 1 cut(s) 110
BseBI CCWGG 1 cut(s) 176
BseDI CCNNGG 5 cut(s) 42, 64, 174, 240, 509
BseGI GGATG 3 cut(s) 184, 304, 485
BseLI CCNNNNNNNGG 2 cut(s) 70, 76
BseMII CTCAG 1 cut(s) 252
BseYI CCCAGC 1 cut(s) 379
BsgI GTGCAG 1 cut(s) 259
Bsh1236I CGCG 1 cut(s) 20
BshFI GGCC 1 cut(s) 69
BsiSI CCGG 2 cut(s) 71, 342
BslFI GGGAC 1 cut(s) 527
BslI CCNNNNNNNGG 2 cut(s) 70, 76
BsmAI GTCTC 1 cut(s) 332
BsmFI GGGAC 1 cut(s) 527
BsmI GAATGC 1 cut(s) 656
BsnI GGCC 1 cut(s) 69
Bso31I GGTCTC 1 cut(s) 332
Bsp143I GATC 2 cut(s) 236, 445
BspACI CCGC 3 cut(s) 8, 11, 18
BspANI GGCC 1 cut(s) 69
BspCNI CTCAG 1 cut(s) 253
BspFNI CGCG 1 cut(s) 20
BspHI TCATGA 1 cut(s) 334
BspLI GGNNCC 3 cut(s) 15, 238, 447
BspMAI CTGCAG 1 cut(s) 355
BspPI GGATC 4 cut(s) 231, 244, 440, 453
BspTNI GGTCTC 1 cut(s) 332
BssECI CCNNGG 5 cut(s) 42, 64, 174, 240, 509
BssMI GATC 2 cut(s) 236, 445
BssT1I CCWWGG 1 cut(s) 64
Bst2UI CCWGG 1 cut(s) 176
Bst4CI ACNGT 5 cut(s) 130, 140, 194, 497, 593
BstC8I GCNNGC 1 cut(s) 506
BstDEI CTNAG 3 cut(s) 110, 164, 261
BstDSI CCRYGG 1 cut(s) 509
BstF5I GGATG 3 cut(s) 184, 304, 485
BstFNI CGCG 1 cut(s) 20
BstKTI GATC 2 cut(s) 239, 448
BstMAI GTCTC 1 cut(s) 332
BstMBI GATC 2 cut(s) 236, 445
BstMWI GCNNNNNNNGC 1 cut(s) 17
BstNI CCWGG 1 cut(s) 176
BstNSI RCATGY 2 cut(s) 399, 613
BstSCI CCNGG 2 cut(s) 69, 174
BstSFI CTRYAG 2 cut(s) 351, 703
BstUI CGCG 1 cut(s) 20
BstV2I GAAGAC 2 cut(s) 259, 558
BstX2I RGATCY 2 cut(s) 236, 445
BstYI RGATCY 2 cut(s) 236, 445
Bsu36I CCTNAGG 1 cut(s) 110
BsuI GTATCC 1 cut(s) 553
BsuRI GGCC 1 cut(s) 69
BtgI CCRYGG 1 cut(s) 509
BtgZI GCGATG 1 cut(s) 118
BtsCI GGATG 3 cut(s) 184, 304, 485
BtsIMutI CAGTG 1 cut(s) 218
Cac8I GCNNGC 1 cut(s) 506
CciI TCATGA 1 cut(s) 334
Cfr13I GGNCC 2 cut(s) 68, 114
Csp6I GTAC 1 cut(s) 613
CviAII CATG 6 cut(s) 122, 335, 396, 556, 610, 727
CviJI RGCY 6 cut(s) 63, 69, 147, 569, 630, 708
CviKI_1 RGCY 6 cut(s) 63, 69, 147, 569, 630, 708
CviQI GTAC 1 cut(s) 613
DdeI CTNAG 3 cut(s) 110, 164, 261
DpnI GATC 2 cut(s) 238, 447
DpnII GATC 2 cut(s) 236, 445
EciI GGCGGA 1 cut(s) 26
Eco130I CCWWGG 1 cut(s) 64
Eco31I GGTCTC 1 cut(s) 332
Eco32I GATATC 1 cut(s) 332
Eco47I GGWCC 1 cut(s) 114
Eco57I CTGAAG 1 cut(s) 671
Eco81I CCTNAGG 1 cut(s) 110
EcoO109I RGGNCCY 1 cut(s) 114
EcoRII CCWGG 1 cut(s) 174
EcoRV GATATC 1 cut(s) 332
EcoT14I CCWWGG 1 cut(s) 64
ErhI CCWWGG 1 cut(s) 64
FaeI CATG 5 cut(s) 125, 338, 399, 559, 613
FalI AAGNNNNNCTT 2 cut(s) 614, 646
FaqI GGGAC 1 cut(s) 527
FatI CATG 5 cut(s) 121, 334, 395, 555, 609
FauI CCCGC 1 cut(s) 25
Fnu4HI GCNGC 2 cut(s) 9, 719
FokI GGATG 3 cut(s) 191, 291, 472
Fsp4HI GCNGC 2 cut(s) 9, 719
GluI GCNGC 2 cut(s) 9, 719
GsaI CCCAGC 1 cut(s) 383
HaeIII GGCC 1 cut(s) 69
HapII CCGG 2 cut(s) 71, 342
Hin1II CATG 5 cut(s) 125, 338, 399, 559, 613
HinfI GANTC 3 cut(s) 158, 386, 635
HpaII CCGG 2 cut(s) 71, 342
HphI GGTGA 2 cut(s) 152, 554
Hpy188I TCNGA 2 cut(s) 244, 651
Hpy188III TCNNGA 2 cut(s) 335, 449
HpyAV CCTTC 5 cut(s) 92, 436, 533, 569, 646
HpyCH4III ACNGT 5 cut(s) 130, 140, 194, 497, 593
HpyF10VI GCNNNNNNNGC 1 cut(s) 17
HpyF3I CTNAG 3 cut(s) 110, 164, 261
Hsp92II CATG 5 cut(s) 125, 338, 399, 559, 613
Kzo9I GATC 2 cut(s) 236, 445
LweI GCATC 3 cut(s) 28, 95, 217
MaeIII GTNAC 1 cut(s) 29
MalI GATC 2 cut(s) 238, 447
MboI GATC 2 cut(s) 236, 445
MboII GAAGA 3 cut(s) 259, 368, 563
MflI RGATCY 2 cut(s) 236, 445
MluCI AATT 5 cut(s) 52, 323, 372, 402, 452
MlyI GAGTC 1 cut(s) 629
MnlI CCTC 6 cut(s) 37, 136, 250, 256, 318, 541
MroXI GAANNNNTTC 1 cut(s) 656
MseI TTAA 1 cut(s) 326
MspI CCGG 2 cut(s) 71, 342
MspR9I CCNGG 2 cut(s) 71, 176
Mva1269I GAATGC 1 cut(s) 656
MvaI CCWGG 1 cut(s) 176
MvnI CGCG 1 cut(s) 20
MwoI GCNNNNNNNGC 1 cut(s) 17
NciI CCSGG 1 cut(s) 71
NdeII GATC 2 cut(s) 236, 445
NlaIII CATG 5 cut(s) 125, 338, 399, 559, 613
NlaIV GGNNCC 3 cut(s) 15, 238, 447
NmeAIII GCCGAG 1 cut(s) 67
NmuCI GTSAC 1 cut(s) 29
NspI RCATGY 2 cut(s) 399, 613
PagI TCATGA 1 cut(s) 334
PciI ACATGT 1 cut(s) 395
PcsI WCGNNNNNNNCGW 2 cut(s) 39, 517
PctI GAATGC 1 cut(s) 656
PdmI GAANNNNTTC 1 cut(s) 656
PfeI GAWTC 2 cut(s) 158, 386
PkrI GCNGC 2 cut(s) 10, 720
PleI GAGTC 1 cut(s) 629
PpsI GAGTC 1 cut(s) 629
PpuMI RGGWCCY 1 cut(s) 114
PscI ACATGT 1 cut(s) 395
Psp5II RGGWCCY 1 cut(s) 114
Psp6I CCWGG 1 cut(s) 174
PspFI CCCAGC 1 cut(s) 379
PspGI CCWGG 1 cut(s) 174
PspN4I GGNNCC 3 cut(s) 15, 238, 447
PspPI GGNCC 2 cut(s) 68, 114
PspPPI RGGWCCY 1 cut(s) 114
PstI CTGCAG 1 cut(s) 355
PsuI RGATCY 2 cut(s) 236, 445
RsaI GTAC 1 cut(s) 614
RsaNI GTAC 1 cut(s) 613
SaqAI TTAA 1 cut(s) 326
SatI GCNGC 2 cut(s) 9, 719
Sau3AI GATC 2 cut(s) 236, 445
Sau96I GGNCC 2 cut(s) 68, 114
SchI GAGTC 1 cut(s) 629
ScrFI CCNGG 2 cut(s) 71, 176
SfaNI GCATC 3 cut(s) 28, 95, 217
SfcI CTRYAG 2 cut(s) 351, 703
SinI GGWCC 1 cut(s) 114
SmlI CTYRAG 2 cut(s) 58, 362
SmoI CTYRAG 2 cut(s) 58, 362
Sse9I AATT 5 cut(s) 52, 323, 372, 402, 452
SsiI CCGC 3 cut(s) 8, 11, 18
StyD4I CCNGG 2 cut(s) 69, 174
StyI CCWWGG 1 cut(s) 64
TaaI ACNGT 5 cut(s) 130, 140, 194, 497, 593
TasI AATT 5 cut(s) 52, 323, 372, 402, 452
TatI WGTACW 1 cut(s) 612
TauI GCSGC 1 cut(s) 11
TfiI GAWTC 2 cut(s) 158, 386
Tru1I TTAA 1 cut(s) 326
Tru9I TTAA 1 cut(s) 326
TscAI CASTG 1 cut(s) 218
TseFI GTSAC 1 cut(s) 29
TseI GCWGC 1 cut(s) 718
Tsp45I GTSAC 1 cut(s) 29
TspDTI ATGAA 4 cut(s) 17, 110, 195, 675
TspGWI ACGGA 1 cut(s) 48
TspRI CASTG 1 cut(s) 218
VpaK11BI GGWCC 1 cut(s) 114
XceI RCATGY 2 cut(s) 399, 613
XmnI GAANNNNTTC 1 cut(s) 656
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.