FvH4_1g06681

Glutamate-gated receptor that probably acts as non- selective cation channel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000721
Physical Location & Seq
Reverse (-)
3532373 .. 3532778
406 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g06681.t1

Sequence Viewer

Length: 285 bp
ATGGCAAACCAGAAGAGCTTCATGCGGTTCATCTTCATTATTTTGTTCAGCTCTGGGATTGAGCCTTCAATGACGAAAGAGGTAATACGAGTACCGGTAGGAGTTGTTCTTAAATTGAATTCACCGGTTGGAGCTATGGCAGAGAATTGCATGGCCATGGCACTTGATGATTTTTATACGAAGCAAGCTCATTATCAAACAAGGCTTTTCCTTCTCACCAGGGATTCAAAGAATGACGTTGTTTCGGCAGCACTCGAAGAACACGATCATCAAAATCAAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

95

Amino Acids

10.65

Weight (kDa)

6.25

Isoelectric Point (pI)

46.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 25
AcoI YGGCCR 1 cut(s) 153
AcsI RAATTY 1 cut(s) 118
AfaI GTAC 1 cut(s) 93
AgeI ACCGGT 2 cut(s) 94, 124
AgsI TTSAA 3 cut(s) 69, 118, 228
AjnI CCWGG 1 cut(s) 218
AluBI AGCT 4 cut(s) 18, 51, 134, 188
AluI AGCT 4 cut(s) 18, 51, 134, 188
AoxI GGCC 1 cut(s) 153
ApeKI GCWGC 1 cut(s) 248
ApoI RAATTY 1 cut(s) 118
AsiGI ACCGGT 2 cut(s) 94, 124
Asp700I GAANNNNTTC 1 cut(s) 17
AsuHPI GGTGA 2 cut(s) 114, 208
BalI TGGCCA 1 cut(s) 155
BbvI GCAGC 1 cut(s) 260
BciT130I CCWGG 1 cut(s) 220
BisI GCNGC 1 cut(s) 249
BlsI GCNGC 1 cut(s) 250
Bme1390I CCNGG 1 cut(s) 220
BmrFI CCNGG 1 cut(s) 220
BsaJI CCNNGG 2 cut(s) 156, 219
BsaWI WCCGGW 2 cut(s) 94, 124
Bse118I RCCGGY 2 cut(s) 94, 124
BseBI CCWGG 1 cut(s) 220
BseDI CCNNGG 2 cut(s) 156, 219
BseXI GCAGC 1 cut(s) 260
BshFI GGCC 1 cut(s) 155
BshTI ACCGGT 2 cut(s) 94, 124
BsiSI CCGG 2 cut(s) 95, 125
BsnI GGCC 1 cut(s) 155
Bsp143I GATC 1 cut(s) 265
Bsp19I CCATGG 1 cut(s) 156
BspACI CCGC 1 cut(s) 25
BspANI GGCC 1 cut(s) 155
BspQI GCTCTTC 1 cut(s) 8
BsrFI RCCGGY 2 cut(s) 94, 124
BssAI RCCGGY 2 cut(s) 94, 124
BssECI CCNNGG 2 cut(s) 156, 219
BssMI GATC 1 cut(s) 265
BssT1I CCWWGG 1 cut(s) 156
Bst2UI CCWGG 1 cut(s) 220
Bst6I CTCTTC 1 cut(s) 8
BstC8I GCNNGC 1 cut(s) 186
BstDSI CCRYGG 1 cut(s) 156
BstKTI GATC 1 cut(s) 268
BstMBI GATC 1 cut(s) 265
BstNI CCWGG 1 cut(s) 220
BstSCI CCNGG 1 cut(s) 218
BstV1I GCAGC 1 cut(s) 260
BsuRI GGCC 1 cut(s) 155
BtgI CCRYGG 1 cut(s) 156
Cac8I GCNNGC 1 cut(s) 186
Cfr10I RCCGGY 2 cut(s) 94, 124
Csp6I GTAC 1 cut(s) 92
CspAI ACCGGT 2 cut(s) 94, 124
CviAII CATG 3 cut(s) 22, 151, 157
CviJI RGCY 7 cut(s) 18, 51, 64, 134, 155, 188, 205
CviKI_1 RGCY 7 cut(s) 18, 51, 64, 134, 155, 188, 205
CviQI GTAC 1 cut(s) 92
DpnI GATC 1 cut(s) 267
DpnII GATC 1 cut(s) 265
EaeI YGGCCR 1 cut(s) 153
Eam1104I CTCTTC 1 cut(s) 8
EarI CTCTTC 1 cut(s) 8
Eco130I CCWWGG 1 cut(s) 156
EcoRI GAATTC 1 cut(s) 118
EcoRII CCWGG 1 cut(s) 218
EcoT14I CCWWGG 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 156
FaeI CATG 3 cut(s) 25, 154, 160
FaiI YATR 5 cut(s) 23, 137, 152, 158, 177
FatI CATG 3 cut(s) 21, 150, 156
Fnu4HI GCNGC 1 cut(s) 249
Fsp4HI GCNGC 1 cut(s) 249
GluI GCNGC 1 cut(s) 249
HaeIII GGCC 1 cut(s) 155
HapII CCGG 2 cut(s) 95, 125
Hin1II CATG 3 cut(s) 25, 154, 160
HinfI GANTC 1 cut(s) 224
HpaII CCGG 2 cut(s) 95, 125
HphI GGTGA 2 cut(s) 114, 208
HpyAV CCTTC 2 cut(s) 75, 221
HpyCH4IV ACGT 1 cut(s) 237
HpyCH4V TGCA 1 cut(s) 150
HpySE526I ACGT 1 cut(s) 237
Hsp92II CATG 3 cut(s) 25, 154, 160
Kzo9I GATC 1 cut(s) 265
LguI GCTCTTC 1 cut(s) 8
LmnI GCTCC 1 cut(s) 131
LpnPI CCDG 6 cut(s) 23, 39, 108, 138, 205, 232
Lsp1109I GCAGC 1 cut(s) 260
MaeII ACGT 1 cut(s) 237
MalI GATC 1 cut(s) 267
MboI GATC 1 cut(s) 265
MboII GAAGA 3 cut(s) 25, 25, 269
MlsI TGGCCA 1 cut(s) 155
MluCI AATT 4 cut(s) 113, 118, 145, 280
MluNI TGGCCA 1 cut(s) 155
MmeI TCCRAC 1 cut(s) 109
MnlI CCTC 1 cut(s) 73
Mox20I TGGCCA 1 cut(s) 155
MroXI GAANNNNTTC 1 cut(s) 17
MscI TGGCCA 1 cut(s) 155
MseI TTAA 1 cut(s) 111
MslI CAYNNNNRTG 1 cut(s) 155
Msp20I TGGCCA 1 cut(s) 155
MspI CCGG 2 cut(s) 95, 125
MspR9I CCNGG 1 cut(s) 220
MvaI CCWGG 1 cut(s) 220
NcoI CCATGG 1 cut(s) 156
NdeII GATC 1 cut(s) 265
NlaIII CATG 3 cut(s) 25, 154, 160
PciSI GCTCTTC 1 cut(s) 8
PcsI WCGNNNNNNNCGW 1 cut(s) 261
PdmI GAANNNNTTC 1 cut(s) 17
PfeI GAWTC 1 cut(s) 224
PinAI ACCGGT 2 cut(s) 94, 124
PkrI GCNGC 1 cut(s) 250
Psp6I CCWGG 1 cut(s) 218
PspGI CCWGG 1 cut(s) 218
PsrI GAACNNNNNNTAC 2 cut(s) 90, 122
RsaI GTAC 1 cut(s) 93
RsaNI GTAC 1 cut(s) 92
RseI CAYNNNNRTG 1 cut(s) 155
SapI GCTCTTC 1 cut(s) 8
SaqAI TTAA 1 cut(s) 111
SatI GCNGC 1 cut(s) 249
Sau3AI GATC 1 cut(s) 265
ScrFI CCNGG 1 cut(s) 220
SetI ASST 6 cut(s) 20, 53, 84, 136, 190, 240
SmiMI CAYNNNNRTG 1 cut(s) 155
Sse9I AATT 4 cut(s) 113, 118, 145, 280
SsiI CCGC 1 cut(s) 25
StyD4I CCNGG 1 cut(s) 218
StyI CCWWGG 1 cut(s) 156
TaiI ACGT 1 cut(s) 240
TaqI TCGA 1 cut(s) 255
TasI AATT 4 cut(s) 113, 118, 145, 280
TfiI GAWTC 1 cut(s) 224
Tru1I TTAA 1 cut(s) 111
Tru9I TTAA 1 cut(s) 111
TseI GCWGC 1 cut(s) 248
TspDTI ATGAA 3 cut(s) 10, 19, 25
XapI RAATTY 1 cut(s) 118
XmnI GAANNNNTTC 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.