Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000721

Physical Location & Seq

Genomic Coordinates Reverse (-)

62942856 .. 62943595

Gene Structure 740 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00270360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGAATATAGTTAATTATAATGTGGGTGTGATTCTTGACCTTGATACGTGGTTCGGGAAGATGAGGCTGAGCTGCATCAATATGGCCCTCTCTGACTTGTATGCTGCTCATCCCAAGTATACGACTAGGCGCGCTCCGTCTGCATCCAAGGAACTCCCCATCGATGCTCGTTTTGAGGTGGACGTCCGCACTGTCGCAAAAGTGCAGACATCCATACTTTCTCAGCGATTAGGCCCCGACGGCAGCGCGGCTCACGCCGGACCGAGGCCAAAGGCATCACGGACGGCTTCACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

98

Amino Acids

10.68

Weight (kDa)

9.8

Isoelectric Point (pI)

37.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000721)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06681
pyrus_communis	pycom15g04290
rosa_chinensis	RchiOBHm_Chr3g0480821 RchiOBHm_Chr4g0403981 RchiOBHm_Chr5g0039881 RchiOBHm_Chr6g0261121 RchiOBHm_Chr6g0269701 RchiOBHm_Chr6g0269821 RchiOBHm_Chr6g0269901 RchiOBHm_Chr6g0304541 RchiOBHm_Chr6g0310841 RchiOBHm_Chr7g0183611
rosa_laevigata	RLG00000010969
rosa_multiflora	Rmu_co8231291.1_g000001 Rmu_sc0000247.1_g000070 Rmu_sc0003610.1_g000022 Rmu_sc0003863.1_g000011 Rmu_sc0004838.1_g000014 Rmu_sc0009130.1_g000011 Rmu_sc0012229.1_g000015 Rmu_sc0026037.1_g000004
rosa_roxburghii	Rroxscaffold_1G00041250 Rroxscaffold_1G00041280 Rroxscaffold_3G00270360 Rroxscaffold_4G00309230 Rroxscaffold_6G00401000 Rroxscaffold_7G00163670 Rroxscaffold_7G00198420 Rroxscaffold_7G00198480
rosa_rugosa	Rorug01G0176000 Rorug03G0303800 Rorug06G0051400
rosa_samantha	Rh1AG055700 Rh1BG160600 Rh1DG191000 Rh2BG397100 Rh3AG238300 Rh3AG305000 Rh3BG271800 Rh3CG267600 Rh4AG121700 Rh4AG122300 Rh4CG130500 Rh4DG115100 Rh4DG115500 Rh5AG268700 Rh5AG269100 Rh5AG269300 Rh5AG269500 Rh5BG272900 Rh5BG273000 Rh5BG273200 Rh5DG281000 Rh6AG169400 Rh6AG169700 Rh6AG170800 Rh6AG445200 Rh6AG497100 Rh6BG175100 Rh6BG456700 Rh6BG506800 Rh6BG506900 Rh6BG507000 Rh6BG507100 Rh6CG169300 Rh6CG458000 Rh6CG512600 Rh6CG512800 Rh6CG513000 Rh6CG513100 Rh6DG161900 Rh6DG444900 Rh6DG499800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	18
AatII	GACGTC	1 cut(s)	186
AccI	GTMKAC	1 cut(s)	119
AccII	CGCG	2 cut(s)	132, 248
AciI	CCGC	2 cut(s)	187, 248
AcyI	GRCGYC	1 cut(s)	183
AfiI	CCNNNNNNNGG	1 cut(s)	264
AluBI	AGCT	1 cut(s)	72
AluI	AGCT	1 cut(s)	72
AoxI	GGCC	3 cut(s)	84, 232, 266
ApeKI	GCWGC	3 cut(s)	72, 104, 243
AspLEI	GCGC	3 cut(s)	132, 134, 248
AspS9I	GGNCC	3 cut(s)	85, 233, 260
AsuHPI	GGTGA	1 cut(s)	282
AvaII	GGWCC	1 cut(s)	260
BbvI	GCAGC	3 cut(s)	59, 91, 255
BccI	CCATC	1 cut(s)	167
BceAI	ACGGC	1 cut(s)	256
BfaI	CTAG	1 cut(s)	126
BglI	GCCNNNNNGGC	1 cut(s)	240
BisI	GCNGC	4 cut(s)	73, 105, 244, 249
BlpI	GCTNAGC	1 cut(s)	68
BlsI	GCNGC	4 cut(s)	74, 106, 245, 250
Bme18I	GGWCC	1 cut(s)	260
BmgT120I	GGNCC	3 cut(s)	85, 233, 260
BmiI	GGNNCC	1 cut(s)	235
BmsI	GCATC	4 cut(s)	84, 152, 154, 284
Bpu1102I	GCTNAGC	1 cut(s)	68
Bsa29I	ATCGAT	1 cut(s)	162
BsaAI	YACGTR	1 cut(s)	48
BsaHI	GRCGYC	1 cut(s)	183
BsaJI	CCNNGG	2 cut(s)	147, 263
Bsc4I	CCNNNNNNNGG	1 cut(s)	264
BseCI	ATCGAT	1 cut(s)	162
BseDI	CCNNGG	2 cut(s)	147, 263
BseGI	GGATG	3 cut(s)	109, 143, 209
BseLI	CCNNNNNNNGG	1 cut(s)	264
BseMII	CTCAG	2 cut(s)	59, 236
BsePI	GCGCGC	1 cut(s)	130
BseXI	GCAGC	3 cut(s)	59, 91, 255
BsgI	GTGCAG	1 cut(s)	224
Bsh1236I	CGCG	2 cut(s)	132, 248
BshFI	GGCC	3 cut(s)	86, 234, 268
BshVI	ATCGAT	1 cut(s)	162
BsiSI	CCGG	1 cut(s)	258
BslI	CCNNNNNNNGG	1 cut(s)	264
BsnI	GGCC	3 cut(s)	86, 234, 268
Bsp1720I	GCTNAGC	1 cut(s)	68
BspACI	CCGC	2 cut(s)	187, 248
BspANI	GGCC	3 cut(s)	86, 234, 268
BspCNI	CTCAG	2 cut(s)	60, 235
BspDI	ATCGAT	1 cut(s)	162
BspFNI	CGCG	2 cut(s)	132, 248
BspLI	GGNNCC	1 cut(s)	235
BssECI	CCNNGG	2 cut(s)	147, 263
BssHII	GCGCGC	1 cut(s)	130
BssNAI	GTATAC	1 cut(s)	120
BssNI	GRCGYC	1 cut(s)	183
BssT1I	CCWWGG	1 cut(s)	147
Bst1107I	GTATAC	1 cut(s)	120
Bst4CI	ACNGT	1 cut(s)	193
BstACI	GRCGYC	1 cut(s)	183
BstBAI	YACGTR	1 cut(s)	48
BstC8I	GCNNGC	1 cut(s)	132
BstDEI	CTNAG	2 cut(s)	68, 222
BstF5I	GGATG	3 cut(s)	109, 143, 209
BstFNI	CGCG	2 cut(s)	132, 248
BstHHI	GCGC	3 cut(s)	132, 134, 248
BstMWI	GCNNNNNNNGC	3 cut(s)	140, 240, 254
BstUI	CGCG	2 cut(s)	132, 248
BstV1I	GCAGC	3 cut(s)	59, 91, 255
BstZ17I	GTATAC	1 cut(s)	120
Bsu15I	ATCGAT	1 cut(s)	162
BsuRI	GGCC	3 cut(s)	86, 234, 268
BsuTUI	ATCGAT	1 cut(s)	162
BtsCI	GGATG	3 cut(s)	109, 143, 209
BtsIMutI	CAGTG	1 cut(s)	189
Cac8I	GCNNGC	1 cut(s)	132
CfoI	GCGC	3 cut(s)	132, 134, 248
Cfr13I	GGNCC	3 cut(s)	85, 233, 260
ClaI	ATCGAT	1 cut(s)	162
CpoI	CGGWCCG	1 cut(s)	260
CspI	CGGWCCG	1 cut(s)	260
CviAII	CATG	1 cut(s)	294
CviJI	RGCY	7 cut(s)	67, 72, 86, 234, 251, 268, 287
CviKI_1	RGCY	7 cut(s)	67, 72, 86, 234, 251, 268, 287
DdeI	CTNAG	2 cut(s)	68, 222
Eco130I	CCWWGG	1 cut(s)	147
Eco47I	GGWCC	1 cut(s)	260
EcoO109I	RGGNCCY	1 cut(s)	233
EcoT14I	CCWWGG	1 cut(s)	147
ErhI	CCWWGG	1 cut(s)	147
FaeI	CATG	1 cut(s)	297
FaiI	YATR	7 cut(s)	8, 18, 83, 102, 120, 215, 295
FatI	CATG	1 cut(s)	293
FblI	GTMKAC	1 cut(s)	119
Fnu4HI	GCNGC	4 cut(s)	73, 105, 244, 249
FokI	GGATG	3 cut(s)	96, 130, 196
Fsp4HI	GCNGC	4 cut(s)	73, 105, 244, 249
FspBI	CTAG	1 cut(s)	126
GlaI	GCGC	3 cut(s)	131, 133, 247
GluI	GCNGC	4 cut(s)	73, 105, 244, 249
HaeIII	GGCC	3 cut(s)	86, 234, 268
HapII	CCGG	1 cut(s)	258
HhaI	GCGC	3 cut(s)	132, 134, 248
Hin1I	GRCGYC	1 cut(s)	183
Hin1II	CATG	1 cut(s)	297
Hin6I	GCGC	3 cut(s)	130, 132, 246
HinP1I	GCGC	3 cut(s)	130, 132, 246
HinfI	GANTC	1 cut(s)	31
HpaII	CCGG	1 cut(s)	258
HphI	GGTGA	1 cut(s)	282
Hpy166II	GTNNAC	2 cut(s)	120, 181
Hpy188I	TCNGA	1 cut(s)	94
Hpy188III	TCNNGA	2 cut(s)	35, 55
Hpy8I	GTNNAC	2 cut(s)	120, 181
Hpy99I	CGWCG	1 cut(s)	242
HpyCH4III	ACNGT	1 cut(s)	193
HpyCH4IV	ACGT	2 cut(s)	47, 183
HpyCH4V	TGCA	3 cut(s)	75, 143, 205
HpyF10VI	GCNNNNNNNGC	3 cut(s)	140, 240, 254
HpyF3I	CTNAG	2 cut(s)	68, 222
HpySE526I	ACGT	2 cut(s)	47, 183
Hsp92I	GRCGYC	1 cut(s)	183
Hsp92II	CATG	1 cut(s)	297
HspAI	GCGC	3 cut(s)	130, 132, 246
LmnI	GCTCC	1 cut(s)	139
LpnPI	CCDG	1 cut(s)	271
Lsp1109I	GCAGC	3 cut(s)	59, 91, 255
LweI	GCATC	4 cut(s)	84, 152, 154, 284
MaeI	CTAG	1 cut(s)	126
MaeII	ACGT	2 cut(s)	47, 183
MboII	GAAGA	1 cut(s)	70
MluCI	AATT	1 cut(s)	13
MnlI	CCTC	4 cut(s)	57, 98, 169, 258
MseI	TTAA	1 cut(s)	12
MslI	CAYNNNNRTG	1 cut(s)	80
MspI	CCGG	1 cut(s)	258
MvnI	CGCG	2 cut(s)	132, 248
MwoI	GCNNNNNNNGC	3 cut(s)	140, 240, 254
NlaIII	CATG	1 cut(s)	297
NlaIV	GGNNCC	1 cut(s)	235
PauI	GCGCGC	1 cut(s)	130
PfeI	GAWTC	1 cut(s)	31
PkrI	GCNGC	4 cut(s)	74, 106, 245, 250
Ppu21I	YACGTR	1 cut(s)	48
PsiI	TTATAA	1 cut(s)	18
PspN4I	GGNNCC	1 cut(s)	235
PspPI	GGNCC	3 cut(s)	85, 233, 260
PteI	GCGCGC	1 cut(s)	130
RseI	CAYNNNNRTG	1 cut(s)	80
Rsr2I	CGGWCCG	1 cut(s)	260
RsrII	CGGWCCG	1 cut(s)	260
SaqAI	TTAA	1 cut(s)	12
SatI	GCNGC	4 cut(s)	73, 105, 244, 249
Sau96I	GGNCC	3 cut(s)	85, 233, 260
SetI	ASST	5 cut(s)	42, 50, 74, 180, 186
SfaNI	GCATC	4 cut(s)	84, 152, 154, 284
SinI	GGWCC	1 cut(s)	260
SmiMI	CAYNNNNRTG	1 cut(s)	80
Sse9I	AATT	1 cut(s)	13
SsiI	CCGC	2 cut(s)	187, 248
SspMI	CTAG	1 cut(s)	126
StyI	CCWWGG	1 cut(s)	147
TaaI	ACNGT	1 cut(s)	193
TaiI	ACGT	2 cut(s)	50, 186
TaqI	TCGA	1 cut(s)	162
TaqII	GACCGA	1 cut(s)	277
TasI	AATT	1 cut(s)	13
TauI	GCSGC	1 cut(s)	251
TfiI	GAWTC	1 cut(s)	31
Tru1I	TTAA	1 cut(s)	12
Tru9I	TTAA	1 cut(s)	12
TscAI	CASTG	1 cut(s)	196
TseI	GCWGC	3 cut(s)	72, 104, 243
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	126, 295
TspRI	CASTG	1 cut(s)	196
VpaK11BI	GGWCC	1 cut(s)	260
XmiI	GTMKAC	1 cut(s)	119
XspI	CTAG	1 cut(s)	126
ZraI	GACGTC	1 cut(s)	184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.