Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000721

Physical Location & Seq

Genomic Coordinates Forward (+)

27102984 .. 27104734

Gene Structure 1751 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG169400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGAAGAAGAAGATGAGTACATCAACCCTCGTCTTTTCTTCCTTAATCGTCTTCTCTCTATCGTCAAGTATTTTGTTGGTGATGGGACAGAAGACGAGTGTCTCAGTGAATGTTGGTGTGATTCTTGATGACCTTGAGTCTGTAAGTTCAAAAGTTAGGCTGAGCTGCATCGAATCGGCCATCTCAGACTTTTATAGCTCTCGTGGAAACACTCAAACGAGGCTGGTTCTGAGCATTAGGGACGCCAGAGGTGATGTTGTCGATGCCGCTGCTGCAGGTATCTCTCTAGTTCCCATTCCTTTCATTTACGGTTATGATCGAGCTGAAGAAGTAAAGCAATTTGACGGCTCCAAGCTCGGAGTCAAAGGCCTCATCGACTCGGGTCTCTCCTCCATCCCCCGAATCTTTATGCACCCACCCATAATATCACATCAATTCCAGCCCACGACCCAACCCGACGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

154

Amino Acids

16.58

Weight (kDa)

7.87

Isoelectric Point (pI)

40.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000721)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06681
pyrus_communis	pycom15g04290
rosa_chinensis	RchiOBHm_Chr3g0480821 RchiOBHm_Chr4g0403981 RchiOBHm_Chr5g0039881 RchiOBHm_Chr6g0261121 RchiOBHm_Chr6g0269701 RchiOBHm_Chr6g0269821 RchiOBHm_Chr6g0269901 RchiOBHm_Chr6g0304541 RchiOBHm_Chr6g0310841 RchiOBHm_Chr7g0183611
rosa_laevigata	RLG00000010969
rosa_multiflora	Rmu_co8231291.1_g000001 Rmu_sc0000247.1_g000070 Rmu_sc0003610.1_g000022 Rmu_sc0003863.1_g000011 Rmu_sc0004838.1_g000014 Rmu_sc0009130.1_g000011 Rmu_sc0012229.1_g000015 Rmu_sc0026037.1_g000004
rosa_roxburghii	Rroxscaffold_1G00041250 Rroxscaffold_1G00041280 Rroxscaffold_3G00270360 Rroxscaffold_4G00309230 Rroxscaffold_6G00401000 Rroxscaffold_7G00163670 Rroxscaffold_7G00198420 Rroxscaffold_7G00198480
rosa_rugosa	Rorug01G0176000 Rorug03G0303800 Rorug06G0051400
rosa_samantha	Rh1AG055700 Rh1BG160600 Rh1DG191000 Rh2BG397100 Rh3AG238300 Rh3AG305000 Rh3BG271800 Rh3CG267600 Rh4AG121700 Rh4AG122300 Rh4CG130500 Rh4DG115100 Rh4DG115500 Rh5AG268700 Rh5AG269100 Rh5AG269300 Rh5AG269500 Rh5BG272900 Rh5BG273000 Rh5BG273200 Rh5DG281000 Rh6AG169400 Rh6AG169700 Rh6AG170800 Rh6AG445200 Rh6AG497100 Rh6BG175100 Rh6BG456700 Rh6BG506800 Rh6BG506900 Rh6BG507000 Rh6BG507100 Rh6CG169300 Rh6CG458000 Rh6CG512600 Rh6CG512800 Rh6CG513000 Rh6CG513100 Rh6DG161900 Rh6DG444900 Rh6DG499800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	266
AciI	CCGC	1 cut(s)	267
AcoI	YGGCCR	1 cut(s)	177
AcuI	CTGAAG	1 cut(s)	345
AcyI	GRCGYC	2 cut(s)	243, 459
AfaI	GTAC	1 cut(s)	19
AgsI	TTSAA	1 cut(s)	150
AhdI	GACNNNNNGTC	1 cut(s)	136
AluBI	AGCT	4 cut(s)	165, 198, 323, 355
AluI	AGCT	4 cut(s)	165, 198, 323, 355
Alw26I	GTCTC	2 cut(s)	106, 389
Ama87I	CYCGRG	1 cut(s)	379
AoxI	GGCC	2 cut(s)	177, 367
ApeKI	GCWGC	3 cut(s)	165, 269, 272
AsuHPI	GGTGA	2 cut(s)	91, 263
AvaI	CYCGRG	1 cut(s)	379
BauI	CACGAG	1 cut(s)	201
BbsI	GAAGAC	2 cut(s)	43, 98
BbvI	GCAGC	3 cut(s)	152, 256, 259
BccI	CCATC	3 cut(s)	76, 188, 401
BceAI	ACGGC	1 cut(s)	361
BcgI	CGANNNNNNTGC	2 cut(s)	251, 285
BcoDI	GTCTC	2 cut(s)	106, 389
BfaI	CTAG	1 cut(s)	287
BfmI	CTRYAG	1 cut(s)	273
BfuAI	ACCTGC	1 cut(s)	266
BisI	GCNGC	4 cut(s)	166, 267, 270, 273
BlpI	GCTNAGC	1 cut(s)	161
BlsI	GCNGC	4 cut(s)	167, 268, 271, 274
BmeRI	GACNNNNNGTC	1 cut(s)	136
BmeT110I	CYCGRG	1 cut(s)	379
BmiI	GGNNCC	1 cut(s)	349
BmsI	GCATC	2 cut(s)	177, 253
BoxI	GACNNNNGTC	2 cut(s)	98, 381
BpiI	GAAGAC	2 cut(s)	43, 98
Bpu1102I	GCTNAGC	1 cut(s)	161
BpuEI	CTTGAG	1 cut(s)	155
BsaHI	GRCGYC	2 cut(s)	243, 459
BsaI	GGTCTC	1 cut(s)	389
BseGI	GGATG	1 cut(s)	393
BseMII	CTCAG	4 cut(s)	117, 152, 198, 221
BseRI	GAGGAG	1 cut(s)	379
BseXI	GCAGC	3 cut(s)	152, 256, 259
BshFI	GGCC	2 cut(s)	179, 369
BsiHKCI	CYCGRG	1 cut(s)	379
BslFI	GGGAC	2 cut(s)	99, 254
BsmAI	GTCTC	2 cut(s)	106, 389
BsmFI	GGGAC	2 cut(s)	99, 254
BsnI	GGCC	2 cut(s)	179, 369
Bso31I	GGTCTC	1 cut(s)	389
BsoBI	CYCGRG	1 cut(s)	379
Bsp143I	GATC	1 cut(s)	316
Bsp1720I	GCTNAGC	1 cut(s)	161
BspACI	CCGC	1 cut(s)	267
BspANI	GGCC	2 cut(s)	179, 369
BspCNI	CTCAG	4 cut(s)	116, 153, 197, 222
BspLI	GGNNCC	1 cut(s)	349
BspMAI	CTGCAG	1 cut(s)	277
BspMI	ACCTGC	1 cut(s)	266
BspTNI	GGTCTC	1 cut(s)	389
BssMI	GATC	1 cut(s)	316
BssNI	GRCGYC	2 cut(s)	243, 459
BssSI	CACGAG	1 cut(s)	201
Bst2BI	CACGAG	1 cut(s)	201
Bst4CI	ACNGT	1 cut(s)	311
BstACI	GRCGYC	2 cut(s)	243, 459
BstDEI	CTNAG	4 cut(s)	103, 161, 184, 230
BstF5I	GGATG	1 cut(s)	393
BstKTI	GATC	1 cut(s)	319
BstMAI	GTCTC	2 cut(s)	106, 389
BstMBI	GATC	1 cut(s)	316
BstMWI	GCNNNNNNNGC	1 cut(s)	272
BstPAI	GACNNNNGTC	2 cut(s)	98, 381
BstSFI	CTRYAG	1 cut(s)	273
BstV1I	GCAGC	3 cut(s)	152, 256, 259
BstV2I	GAAGAC	2 cut(s)	43, 98
BsuRI	GGCC	2 cut(s)	179, 369
BtsCI	GGATG	1 cut(s)	393
BtsIMutI	CAGTG	1 cut(s)	111
BveI	ACCTGC	1 cut(s)	266
CseI	GACGC	1 cut(s)	251
Csp6I	GTAC	1 cut(s)	18
CviQI	GTAC	1 cut(s)	18
DdeI	CTNAG	4 cut(s)	103, 161, 184, 230
DpnI	GATC	1 cut(s)	318
DpnII	GATC	1 cut(s)	316
DriI	GACNNNNNGTC	1 cut(s)	136
EaeI	YGGCCR	1 cut(s)	177
Eam1105I	GACNNNNNGTC	1 cut(s)	136
Eco147I	AGGCCT	1 cut(s)	369
Eco31I	GGTCTC	1 cut(s)	389
Eco57I	CTGAAG	1 cut(s)	345
Eco88I	CYCGRG	1 cut(s)	379
FaiI	YATR	4 cut(s)	195, 315, 410, 422
FaqI	GGGAC	2 cut(s)	99, 254
Fnu4HI	GCNGC	4 cut(s)	166, 267, 270, 273
FokI	GGATG	1 cut(s)	380
Fsp4HI	GCNGC	4 cut(s)	166, 267, 270, 273
FspBI	CTAG	1 cut(s)	287
GluI	GCNGC	4 cut(s)	166, 267, 270, 273
HaeIII	GGCC	2 cut(s)	179, 369
HgaI	GACGC	1 cut(s)	251
Hin1I	GRCGYC	2 cut(s)	243, 459
HinfI	GANTC	6 cut(s)	121, 137, 173, 360, 377, 402
HphI	GGTGA	2 cut(s)	91, 263
Hpy188I	TCNGA	3 cut(s)	187, 231, 359
Hpy188III	TCNNGA	1 cut(s)	125
Hpy99I	CGWCG	1 cut(s)	461
HpyCH4III	ACNGT	1 cut(s)	311
HpyCH4V	TGCA	3 cut(s)	168, 275, 412
HpyF10VI	GCNNNNNNNGC	1 cut(s)	272
HpyF3I	CTNAG	4 cut(s)	103, 161, 184, 230
Hsp92I	GRCGYC	2 cut(s)	243, 459
Kzo9I	GATC	1 cut(s)	316
LmnI	GCTCC	1 cut(s)	353
LpnPI	CCDG	4 cut(s)	209, 259, 261, 452
Lsp1109I	GCAGC	3 cut(s)	152, 256, 259
LweI	GCATC	2 cut(s)	177, 253
MaeI	CTAG	1 cut(s)	287
MalI	GATC	1 cut(s)	318
MboI	GATC	1 cut(s)	316
MboII	GAAGA	7 cut(s)	16, 19, 22, 30, 43, 103, 338
MluCI	AATT	2 cut(s)	338, 434
MlyI	GAGTC	3 cut(s)	146, 369, 371
MnlI	CCTC	5 cut(s)	38, 213, 242, 380, 400
MseI	TTAA	1 cut(s)	44
MspA1I	CMGCKG	1 cut(s)	269
MwoI	GCNNNNNNNGC	1 cut(s)	272
NdeII	GATC	1 cut(s)	316
NlaIV	GGNNCC	1 cut(s)	349
PceI	AGGCCT	1 cut(s)	369
PfeI	GAWTC	3 cut(s)	121, 173, 402
PkrI	GCNGC	4 cut(s)	167, 268, 271, 274
PleI	GAGTC	3 cut(s)	145, 368, 371
PpsI	GAGTC	3 cut(s)	145, 368, 371
PshAI	GACNNNNGTC	2 cut(s)	98, 381
PspN4I	GGNNCC	1 cut(s)	349
PstI	CTGCAG	1 cut(s)	277
RsaI	GTAC	1 cut(s)	19
RsaNI	GTAC	1 cut(s)	18
SaqAI	TTAA	1 cut(s)	44
SatI	GCNGC	4 cut(s)	166, 267, 270, 273
Sau3AI	GATC	1 cut(s)	316
SchI	GAGTC	3 cut(s)	146, 369, 371
SetI	ASST	7 cut(s)	135, 167, 200, 253, 280, 325, 357
SfaNI	GCATC	2 cut(s)	177, 253
SfcI	CTRYAG	1 cut(s)	273
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
Sse9I	AATT	2 cut(s)	338, 434
SseBI	AGGCCT	1 cut(s)	369
SsiI	CCGC	1 cut(s)	267
SspMI	CTAG	1 cut(s)	287
StuI	AGGCCT	1 cut(s)	369
TaaI	ACNGT	1 cut(s)	311
TaqI	TCGA	4 cut(s)	171, 261, 319, 375
TasI	AATT	2 cut(s)	338, 434
TatI	WGTACW	1 cut(s)	17
TauI	GCSGC	1 cut(s)	269
TfiI	GAWTC	3 cut(s)	121, 173, 402
Tru1I	TTAA	1 cut(s)	44
Tru9I	TTAA	1 cut(s)	44
TscAI	CASTG	1 cut(s)	111
TseI	GCWGC	3 cut(s)	165, 269, 272
TspDTI	ATGAA	2 cut(s)	17, 292
TspRI	CASTG	1 cut(s)	111
XspI	CTAG	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.