Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0000721

Physical Location & Seq

Genomic Coordinates Reverse (-)

70445748 .. 70456695

Gene Structure 10948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG506900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGCACGAAACACAACTTACCCAATAAATGTGGGTGTGGTTCTTGACTTGGATACCTCTTTTGGGAAAATCGGGCTGAGCTGCATCAAAATGGCCCTCTCTGACTTCTATGCCTCTCATGCTTACTACAGTACTAGGCTCGTCCTACACACGAGGGACTCCAAAGGAGATGTTGTTGTTGCAGCTGGTGCAGGTGCTGTTGAAGCCTCACCAAACAGCAACTCTCCCCCAAGGCCATCAAGCGCAAGCAACATGGAATCCCACCTTGTTGTTGAAGAGCTGGGGACTCTTCCTACTGAGATTGAGCATCACAGTGGTCGAGCAACGCCAGAGGTTGAATGTGCAATCAACTTAACTCCCCCAAGTGAAGCGAGGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

126

Amino Acids

13.39

Weight (kDa)

5.59

Isoelectric Point (pI)

52.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000721)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06681
pyrus_communis	pycom15g04290
rosa_chinensis	RchiOBHm_Chr3g0480821 RchiOBHm_Chr4g0403981 RchiOBHm_Chr5g0039881 RchiOBHm_Chr6g0261121 RchiOBHm_Chr6g0269701 RchiOBHm_Chr6g0269821 RchiOBHm_Chr6g0269901 RchiOBHm_Chr6g0304541 RchiOBHm_Chr6g0310841 RchiOBHm_Chr7g0183611
rosa_laevigata	RLG00000010969
rosa_multiflora	Rmu_co8231291.1_g000001 Rmu_sc0000247.1_g000070 Rmu_sc0003610.1_g000022 Rmu_sc0003863.1_g000011 Rmu_sc0004838.1_g000014 Rmu_sc0009130.1_g000011 Rmu_sc0012229.1_g000015 Rmu_sc0026037.1_g000004
rosa_roxburghii	Rroxscaffold_1G00041250 Rroxscaffold_1G00041280 Rroxscaffold_3G00270360 Rroxscaffold_4G00309230 Rroxscaffold_6G00401000 Rroxscaffold_7G00163670 Rroxscaffold_7G00198420 Rroxscaffold_7G00198480
rosa_rugosa	Rorug01G0176000 Rorug03G0303800 Rorug06G0051400
rosa_samantha	Rh1AG055700 Rh1BG160600 Rh1DG191000 Rh2BG397100 Rh3AG238300 Rh3AG305000 Rh3BG271800 Rh3CG267600 Rh4AG121700 Rh4AG122300 Rh4CG130500 Rh4DG115100 Rh4DG115500 Rh5AG268700 Rh5AG269100 Rh5AG269300 Rh5AG269500 Rh5BG272900 Rh5BG273000 Rh5BG273200 Rh5DG281000 Rh6AG169400 Rh6AG169700 Rh6AG170800 Rh6AG445200 Rh6AG497100 Rh6BG175100 Rh6BG456700 Rh6BG506800 Rh6BG506900 Rh6BG507000 Rh6BG507100 Rh6CG169300 Rh6CG458000 Rh6CG512600 Rh6CG512800 Rh6CG513000 Rh6CG513100 Rh6DG161900 Rh6DG444900 Rh6DG499800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	182
Acc36I	ACCTGC	1 cut(s)	182
AfaI	GTAC	1 cut(s)	133
AfiI	CCNNNNNNNGG	1 cut(s)	63
AgsI	TTSAA	3 cut(s)	203, 275, 338
AluBI	AGCT	3 cut(s)	81, 185, 280
AluI	AGCT	3 cut(s)	81, 185, 280
AlwNI	CAGNNNCTG	1 cut(s)	197
AoxI	GGCC	2 cut(s)	93, 233
ApeKI	GCWGC	2 cut(s)	81, 182
AspLEI	GCGC	1 cut(s)	245
AspS9I	GGNCC	1 cut(s)	94
AsuHPI	GGTGA	1 cut(s)	201
BauI	CACGAG	1 cut(s)	151
BbvI	GCAGC	2 cut(s)	68, 194
BccI	CCATC	1 cut(s)	244
BciVI	GTATCC	1 cut(s)	46
BfaI	CTAG	1 cut(s)	135
BfmI	CTRYAG	1 cut(s)	127
BfuAI	ACCTGC	1 cut(s)	182
BfuI	GTATCC	1 cut(s)	46
BisI	GCNGC	2 cut(s)	82, 183
BlpI	GCTNAGC	1 cut(s)	77
BlsI	GCNGC	2 cut(s)	83, 184
BmcAI	AGTACT	1 cut(s)	133
BmgT120I	GGNCC	1 cut(s)	94
BmsI	GCATC	2 cut(s)	93, 316
Bpu1102I	GCTNAGC	1 cut(s)	77
BsaJI	CCNNGG	1 cut(s)	230
BsaXI	ACNNNNNCTCC	2 cut(s)	159, 189
Bsc4I	CCNNNNNNNGG	1 cut(s)	63
BseDI	CCNNGG	1 cut(s)	230
BseLI	CCNNNNNNNGG	1 cut(s)	63
BseMII	CTCAG	2 cut(s)	68, 288
BseXI	GCAGC	2 cut(s)	68, 194
BseYI	CCCAGC	1 cut(s)	280
BsgI	GTGCAG	1 cut(s)	210
BshFI	GGCC	2 cut(s)	95, 235
BslFI	GGGAC	2 cut(s)	170, 298
BslI	CCNNNNNNNGG	1 cut(s)	63
BsmFI	GGGAC	2 cut(s)	170, 298
BsnI	GGCC	2 cut(s)	95, 235
Bsp1720I	GCTNAGC	1 cut(s)	77
BspANI	GGCC	2 cut(s)	95, 235
BspCNI	CTCAG	2 cut(s)	69, 289
BspMI	ACCTGC	1 cut(s)	182
BspQI	GCTCTTC	1 cut(s)	270
BssECI	CCNNGG	1 cut(s)	230
BssSI	CACGAG	1 cut(s)	151
BssT1I	CCWWGG	1 cut(s)	230
Bst2BI	CACGAG	1 cut(s)	151
Bst4CI	ACNGT	2 cut(s)	131, 314
Bst6I	CTCTTC	2 cut(s)	270, 294
BstAPI	GCANNNNNTGC	1 cut(s)	188
BstC8I	GCNNGC	1 cut(s)	247
BstDEI	CTNAG	2 cut(s)	77, 297
BstHHI	GCGC	1 cut(s)	245
BstMWI	GCNNNNNNNGC	3 cut(s)	119, 188, 203
BstSFI	CTRYAG	1 cut(s)	127
BstV1I	GCAGC	2 cut(s)	68, 194
BsuI	GTATCC	1 cut(s)	46
BsuRI	GGCC	2 cut(s)	95, 235
BtsIMutI	CAGTG	1 cut(s)	319
BveI	ACCTGC	1 cut(s)	182
Cac8I	GCNNGC	1 cut(s)	247
CaiI	CAGNNNCTG	1 cut(s)	197
CfoI	GCGC	1 cut(s)	245
Cfr13I	GGNCC	1 cut(s)	94
Csp6I	GTAC	1 cut(s)	132
CspCI	CAANNNNNGTGG	2 cut(s)	12, 47
CviAII	CATG	2 cut(s)	119, 253
CviJI	RGCY	8 cut(s)	76, 81, 95, 139, 185, 206, 235, 280
CviKI_1	RGCY	8 cut(s)	76, 81, 95, 139, 185, 206, 235, 280
CviQI	GTAC	1 cut(s)	132
DdeI	CTNAG	2 cut(s)	77, 297
Eam1104I	CTCTTC	2 cut(s)	270, 294
EarI	CTCTTC	2 cut(s)	270, 294
Eco130I	CCWWGG	1 cut(s)	230
EcoT14I	CCWWGG	1 cut(s)	230
ErhI	CCWWGG	1 cut(s)	230
FaeI	CATG	2 cut(s)	122, 256
FaiI	YATR	3 cut(s)	111, 120, 254
FaqI	GGGAC	2 cut(s)	170, 298
FatI	CATG	2 cut(s)	118, 252
Fnu4HI	GCNGC	2 cut(s)	82, 183
Fsp4HI	GCNGC	2 cut(s)	82, 183
FspBI	CTAG	1 cut(s)	135
GlaI	GCGC	1 cut(s)	244
GluI	GCNGC	2 cut(s)	82, 183
GsaI	CCCAGC	1 cut(s)	284
HaeIII	GGCC	2 cut(s)	95, 235
HhaI	GCGC	1 cut(s)	245
Hin1II	CATG	2 cut(s)	122, 256
Hin6I	GCGC	1 cut(s)	243
HinP1I	GCGC	1 cut(s)	243
HinfI	GANTC	3 cut(s)	158, 257, 286
HphI	GGTGA	1 cut(s)	201
Hpy188I	TCNGA	1 cut(s)	103
Hpy188III	TCNNGA	1 cut(s)	44
HpyCH4III	ACNGT	2 cut(s)	131, 314
HpyCH4V	TGCA	4 cut(s)	84, 182, 191, 344
HpyF10VI	GCNNNNNNNGC	3 cut(s)	119, 188, 203
HpyF3I	CTNAG	2 cut(s)	77, 297
Hsp92II	CATG	2 cut(s)	122, 256
HspAI	GCGC	1 cut(s)	243
LguI	GCTCTTC	1 cut(s)	270
LpnPI	CCDG	4 cut(s)	171, 177, 266, 342
Lsp1109I	GCAGC	2 cut(s)	68, 194
LweI	GCATC	2 cut(s)	93, 316
MaeI	CTAG	1 cut(s)	135
MboII	GAAGA	2 cut(s)	281, 287
MlyI	GAGTC	2 cut(s)	152, 280
MnlI	CCTC	7 cut(s)	67, 107, 124, 147, 217, 325, 366
MseI	TTAA	1 cut(s)	353
MslI	CAYNNNNRTG	2 cut(s)	89, 312
MspA1I	CMGCKG	1 cut(s)	185
MwoI	GCNNNNNNNGC	3 cut(s)	119, 188, 203
NlaIII	CATG	2 cut(s)	122, 256
PaqCI	CACCTGC	1 cut(s)	182
PciSI	GCTCTTC	1 cut(s)	270
PfeI	GAWTC	1 cut(s)	257
PkrI	GCNGC	2 cut(s)	83, 184
PleI	GAGTC	2 cut(s)	152, 280
PpsI	GAGTC	2 cut(s)	152, 280
PspFI	CCCAGC	1 cut(s)	280
PspPI	GGNCC	1 cut(s)	94
PstNI	CAGNNNCTG	1 cut(s)	197
PvuII	CAGCTG	1 cut(s)	185
RsaI	GTAC	1 cut(s)	133
RsaNI	GTAC	1 cut(s)	132
RseI	CAYNNNNRTG	2 cut(s)	89, 312
SapI	GCTCTTC	1 cut(s)	270
SaqAI	TTAA	1 cut(s)	353
SatI	GCNGC	2 cut(s)	82, 183
Sau96I	GGNCC	1 cut(s)	94
ScaI	AGTACT	1 cut(s)	133
SchI	GAGTC	2 cut(s)	152, 280
SetI	ASST	7 cut(s)	59, 83, 187, 196, 267, 282, 336
SfaNI	GCATC	2 cut(s)	93, 316
SfcI	CTRYAG	1 cut(s)	127
SmiMI	CAYNNNNRTG	2 cut(s)	89, 312
SspMI	CTAG	1 cut(s)	135
StyI	CCWWGG	1 cut(s)	230
TaaI	ACNGT	2 cut(s)	131, 314
TaqI	TCGA	1 cut(s)	319
TatI	WGTACW	1 cut(s)	131
TfiI	GAWTC	1 cut(s)	257
Tru1I	TTAA	1 cut(s)	353
Tru9I	TTAA	1 cut(s)	353
TscAI	CASTG	1 cut(s)	319
TseI	GCWGC	2 cut(s)	81, 182
TspRI	CASTG	1 cut(s)	319
XspI	CTAG	1 cut(s)	135
ZrmI	AGTACT	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.