Rh6BG175100

Glutamate receptor

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Forward (+)
29166890 .. 29169869
2980 bp
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UTR
Exon/CDS
Intron
Rh6BG175100.1

Sequence Viewer

Length: 231 bp
ATGATTAATGCACAAAATACAACAATCCCAGTGAATGTCGGTGTTGTTCTTGATTTTGATTCAGGGGGCGGGAAGACTGCAAAGGTGTACTTGAGTTGCATAGAAATGGCCCTCTCAGATATTTATGCATCTCATCCTTACTTCAAGACGAGGATAGTATTGAACACAAGGAACTCCAAGCAAACTGTTGTTGGTGCAGCTGCGGCAGTTTGGTTGAGCGGGGAGCTATGA

Protein Analysis

76

Amino Acids

8.12

Weight (kDa)

7.89

Isoelectric Point (pI)

26.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 219
AciI CCGC 3 cut(s) 69, 203, 219
AfaI GTAC 1 cut(s) 89
AgsI TTSAA 2 cut(s) 145, 163
AluBI AGCT 2 cut(s) 200, 226
AluI AGCT 2 cut(s) 200, 226
AoxI GGCC 1 cut(s) 108
ApeKI GCWGC 2 cut(s) 197, 200
AseI ATTAAT 1 cut(s) 6
AspS9I GGNCC 1 cut(s) 109
BbsI GAAGAC 1 cut(s) 80
BbvI GCAGC 2 cut(s) 187, 209
BisI GCNGC 3 cut(s) 198, 201, 204
BlsI GCNGC 3 cut(s) 199, 202, 205
BmgT120I GGNCC 1 cut(s) 109
BmrI ACTGGG 1 cut(s) 23
BmsI GCATC 1 cut(s) 137
BmuI ACTGGG 1 cut(s) 23
BpiI GAAGAC 1 cut(s) 80
BpuEI CTTGAG 1 cut(s) 112
Bse1I ACTGG 1 cut(s) 29
BseGI GGATG 1 cut(s) 133
BseMII CTCAG 1 cut(s) 129
BseNI ACTGG 1 cut(s) 29
BseXI GCAGC 2 cut(s) 187, 209
BsgI GTGCAG 1 cut(s) 216
BshFI GGCC 1 cut(s) 110
BsnI GGCC 1 cut(s) 110
BspACI CCGC 3 cut(s) 69, 203, 219
BspANI GGCC 1 cut(s) 110
BspCNI CTCAG 1 cut(s) 128
BsrBI CCGCTC 1 cut(s) 219
BsrI ACTGG 1 cut(s) 29
Bst4CI ACNGT 1 cut(s) 187
BstDEI CTNAG 1 cut(s) 115
BstF5I GGATG 1 cut(s) 133
BstMWI GCNNNNNNNGC 1 cut(s) 203
BstV1I GCAGC 2 cut(s) 187, 209
BstV2I GAAGAC 1 cut(s) 80
BsuRI GGCC 1 cut(s) 110
BtsCI GGATG 1 cut(s) 133
BtsIMutI CAGTG 1 cut(s) 36
Cfr13I GGNCC 1 cut(s) 109
Csp6I GTAC 1 cut(s) 88
CviJI RGCY 3 cut(s) 110, 200, 226
CviKI_1 RGCY 3 cut(s) 110, 200, 226
CviQI GTAC 1 cut(s) 88
DdeI CTNAG 1 cut(s) 115
EcoT22I ATGCAT 1 cut(s) 130
FaiI YATR 3 cut(s) 101, 126, 229
FalI AAGNNNNNCTT 2 cut(s) 74, 106
FauI CCCGC 2 cut(s) 62, 212
Fnu4HI GCNGC 3 cut(s) 198, 201, 204
FokI GGATG 1 cut(s) 120
Fsp4HI GCNGC 3 cut(s) 198, 201, 204
GluI GCNGC 3 cut(s) 198, 201, 204
HaeIII GGCC 1 cut(s) 110
HinfI GANTC 1 cut(s) 59
Hpy166II GTNNAC 1 cut(s) 88
Hpy188I TCNGA 1 cut(s) 118
Hpy188III TCNNGA 2 cut(s) 50, 145
Hpy8I GTNNAC 1 cut(s) 88
HpyCH4III ACNGT 1 cut(s) 187
HpyCH4V TGCA 5 cut(s) 11, 80, 99, 128, 197
HpyF10VI GCNNNNNNNGC 1 cut(s) 203
HpyF3I CTNAG 1 cut(s) 115
LmnI GCTCC 1 cut(s) 223
LpnPI CCDG 2 cut(s) 42, 48
Lsp1109I GCAGC 2 cut(s) 187, 209
LweI GCATC 1 cut(s) 137
MbiI CCGCTC 1 cut(s) 219
MboII GAAGA 1 cut(s) 85
MnlI CCTC 2 cut(s) 122, 144
Mph1103I ATGCAT 1 cut(s) 130
MseI TTAA 1 cut(s) 6
MslI CAYNNNNRTG 1 cut(s) 104
MspA1I CMGCKG 1 cut(s) 200
MwoI GCNNNNNNNGC 1 cut(s) 203
NsiI ATGCAT 1 cut(s) 130
PfeI GAWTC 1 cut(s) 59
PkrI GCNGC 3 cut(s) 199, 202, 205
PshBI ATTAAT 1 cut(s) 6
PspPI GGNCC 1 cut(s) 109
PvuII CAGCTG 1 cut(s) 200
RsaI GTAC 1 cut(s) 89
RsaNI GTAC 1 cut(s) 88
RseI CAYNNNNRTG 1 cut(s) 104
SaqAI TTAA 1 cut(s) 6
SatI GCNGC 3 cut(s) 198, 201, 204
Sau96I GGNCC 1 cut(s) 109
SetI ASST 3 cut(s) 87, 202, 228
SfaNI GCATC 1 cut(s) 137
SgeI CNNG 9 cut(s) 41, 62, 75, 82, 103, 157, 162, 180, 190
SmiMI CAYNNNNRTG 1 cut(s) 104
SmlI CTYRAG 1 cut(s) 91
SmoI CTYRAG 1 cut(s) 91
SsiI CCGC 3 cut(s) 69, 203, 219
TaaI ACNGT 1 cut(s) 187
TatI WGTACW 1 cut(s) 87
TauI GCSGC 1 cut(s) 206
TfiI GAWTC 1 cut(s) 59
Tru1I TTAA 1 cut(s) 6
Tru9I TTAA 1 cut(s) 6
TscAI CASTG 1 cut(s) 36
TseI GCWGC 2 cut(s) 197, 200
TspRI CASTG 1 cut(s) 36
VspI ATTAAT 1 cut(s) 6
Zsp2I ATGCAT 1 cut(s) 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.