Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003610.1

Orthogroup ID

OG0000721

Physical Location & Seq

Genomic Coordinates Forward (+)

84844 .. 87277

Gene Structure 2434 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003610.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

atggccctatcggactggtatgcttcacatccgaattacaatacgaggctccttctgcaccaaaggaactccccctctgatgttgttctttcagctgctgcagctcttgacctgataaagaatgttgaagtgcaagccatcgtaggccctgcatcatcaatgcaggccaacttcatgatcaatctaggagacaaagcacgtgtccccgtaatctcattttcagcaacaagcccttctctaacttcaactcggagcccgtatttctttcgagctgcacaaaatgactcgtctcaggtgaaagccataagcgatatcattcaagcctttggttggagacaagtagtccccatgtacgtcgagaatgagtttggagaaggagtaattgtagaagatgactcttttgatgaagaaacaaatgaaaaatgcaagcaattgtataatgcttcaagaattgttcttaagaaaaataataaacttgaagaggaaattgaattcttaaggggtgagaaagagaagattgagaaaagatttgaaatatctttgaaagaatgggaagatgagcatactgaccttgttgctaagataaatgttgtgcagggtaaggtcaagtctcaaaattgggacaaggagcatgatgagattactaacaaaatcaaagttttgcaggttgaaattaaggcgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

227

Amino Acids

25.79

Weight (kDa)

5.27

Isoelectric Point (pI)

39.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000721)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06681
pyrus_communis	pycom15g04290
rosa_chinensis	RchiOBHm_Chr3g0480821 RchiOBHm_Chr4g0403981 RchiOBHm_Chr5g0039881 RchiOBHm_Chr6g0261121 RchiOBHm_Chr6g0269701 RchiOBHm_Chr6g0269821 RchiOBHm_Chr6g0269901 RchiOBHm_Chr6g0304541 RchiOBHm_Chr6g0310841 RchiOBHm_Chr7g0183611
rosa_laevigata	RLG00000010969
rosa_multiflora	Rmu_co8231291.1_g000001 Rmu_sc0000247.1_g000070 Rmu_sc0003610.1_g000022 Rmu_sc0003863.1_g000011 Rmu_sc0004838.1_g000014 Rmu_sc0009130.1_g000011 Rmu_sc0012229.1_g000015 Rmu_sc0026037.1_g000004
rosa_roxburghii	Rroxscaffold_1G00041250 Rroxscaffold_1G00041280 Rroxscaffold_3G00270360 Rroxscaffold_4G00309230 Rroxscaffold_6G00401000 Rroxscaffold_7G00163670 Rroxscaffold_7G00198420 Rroxscaffold_7G00198480
rosa_rugosa	Rorug01G0176000 Rorug03G0303800 Rorug06G0051400
rosa_samantha	Rh1AG055700 Rh1BG160600 Rh1DG191000 Rh2BG397100 Rh3AG238300 Rh3AG305000 Rh3BG271800 Rh3CG267600 Rh4AG121700 Rh4AG122300 Rh4CG130500 Rh4DG115100 Rh4DG115500 Rh5AG268700 Rh5AG269100 Rh5AG269300 Rh5AG269500 Rh5BG272900 Rh5BG273000 Rh5BG273200 Rh5DG281000 Rh6AG169400 Rh6AG169700 Rh6AG170800 Rh6AG445200 Rh6AG497100 Rh6BG175100 Rh6BG456700 Rh6BG506800 Rh6BG506900 Rh6BG507000 Rh6BG507100 Rh6CG169300 Rh6CG458000 Rh6CG512600 Rh6CG512800 Rh6CG513000 Rh6CG513100 Rh6DG161900 Rh6DG444900 Rh6DG499800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	655
AcsI	RAATTY	1 cut(s)	491
AcvI	CACGTG	1 cut(s)	200
AfaI	GTAC	1 cut(s)	353
AfiI	CCNNNNNNNGG	1 cut(s)	330
AflII	CTTAAG	2 cut(s)	458, 496
AflIII	ACRYGT	1 cut(s)	199
AgsI	TTSAA	9 cut(s)	128, 246, 320, 447, 479, 491, 533, 544, 671
AhdI	GACNNNNNGTC	1 cut(s)	341
AluBI	AGCT	3 cut(s)	95, 104, 272
AluI	AGCT	3 cut(s)	95, 104, 272
Alw26I	GTCTC	4 cut(s)	183, 294, 328, 615
AlwNI	CAGNNNCTG	1 cut(s)	98
AoxI	GGCC	3 cut(s)	3, 145, 165
ApeKI	GCWGC	4 cut(s)	95, 98, 101, 272
ApoI	RAATTY	1 cut(s)	491
ArsI	GACNNNNNNTTYG	2 cut(s)	186, 218
AspS9I	GGNCC	2 cut(s)	4, 146
AsuHPI	GGTGA	2 cut(s)	307, 515
BanII	GRGCYC	1 cut(s)	257
BbrPI	CACGTG	1 cut(s)	200
BbvI	GCAGC	4 cut(s)	82, 85, 113, 259
BccI	CCATC	1 cut(s)	146
BclI	TGATCA	1 cut(s)	177
BcoDI	GTCTC	4 cut(s)	183, 294, 328, 615
BfaI	CTAG	1 cut(s)	185
BfmI	CTRYAG	1 cut(s)	99
BfrI	CTTAAG	2 cut(s)	458, 496
BfuAI	ACCTGC	1 cut(s)	655
BisI	GCNGC	4 cut(s)	96, 99, 102, 273
BlsI	GCNGC	4 cut(s)	97, 100, 103, 274
BmeRI	GACNNNNNGTC	1 cut(s)	341
BmgT120I	GGNCC	2 cut(s)	4, 146
BmiI	GGNNCC	2 cut(s)	50, 254
BmsI	GCATC	1 cut(s)	161
BsaAI	YACGTR	1 cut(s)	200
BsaXI	ACNNNNNCTCC	4 cut(s)	363, 369, 393, 399
Bsc4I	CCNNNNNNNGG	1 cut(s)	330
Bse1I	ACTGG	1 cut(s)	20
BseGI	GGATG	1 cut(s)	28
BseLI	CCNNNNNNNGG	1 cut(s)	330
BseMII	CTCAG	1 cut(s)	305
BseNI	ACTGG	1 cut(s)	20
BseXI	GCAGC	4 cut(s)	82, 85, 113, 259
BsgI	GTGCAG	3 cut(s)	41, 258, 614
BshFI	GGCC	3 cut(s)	5, 147, 167
BslFI	GGGAC	3 cut(s)	188, 329, 635
BslI	CCNNNNNNNGG	1 cut(s)	330
BsmAI	GTCTC	4 cut(s)	183, 294, 328, 615
BsmBI	CGTCTC	1 cut(s)	294
BsmFI	GGGAC	3 cut(s)	188, 329, 635
BsnI	GGCC	3 cut(s)	5, 147, 167
Bsp1286I	GDGCHC	1 cut(s)	257
Bsp143I	GATC	1 cut(s)	177
BspANI	GGCC	3 cut(s)	5, 147, 167
BspCNI	CTCAG	1 cut(s)	304
BspHI	TCATGA	1 cut(s)	174
BspLI	GGNNCC	2 cut(s)	50, 254
BspMAI	CTGCAG	1 cut(s)	103
BspMI	ACCTGC	1 cut(s)	655
BspTI	CTTAAG	2 cut(s)	458, 496
BsrI	ACTGG	1 cut(s)	20
BssMI	GATC	1 cut(s)	177
Bst6I	CTCTTC	1 cut(s)	474
BstAFI	CTTAAG	2 cut(s)	458, 496
BstBAI	YACGTR	1 cut(s)	200
BstC8I	GCNNGC	3 cut(s)	135, 165, 428
BstDEI	CTNAG	2 cut(s)	291, 579
BstF5I	GGATG	1 cut(s)	28
BstKTI	GATC	1 cut(s)	180
BstMAI	GTCTC	4 cut(s)	183, 294, 328, 615
BstMBI	GATC	1 cut(s)	177
BstMWI	GCNNNNNNNGC	2 cut(s)	55, 101
BstSFI	CTRYAG	1 cut(s)	99
BstV1I	GCAGC	4 cut(s)	82, 85, 113, 259
BsuRI	GGCC	3 cut(s)	5, 147, 167
BtsCI	GGATG	1 cut(s)	28
BveI	ACCTGC	1 cut(s)	655
Cac8I	GCNNGC	3 cut(s)	135, 165, 428
CaiI	CAGNNNCTG	1 cut(s)	98
CciI	TCATGA	1 cut(s)	174
Cfr13I	GGNCC	2 cut(s)	4, 146
Csp6I	GTAC	1 cut(s)	352
CviAII	CATG	3 cut(s)	175, 349, 632
CviQI	GTAC	1 cut(s)	352
DdeI	CTNAG	2 cut(s)	291, 579
DpnI	GATC	1 cut(s)	179
DpnII	GATC	1 cut(s)	177
DriI	GACNNNNNGTC	1 cut(s)	341
Eam1104I	CTCTTC	1 cut(s)	474
Eam1105I	GACNNNNNGTC	1 cut(s)	341
EarI	CTCTTC	1 cut(s)	474
Eco24I	GRGCYC	1 cut(s)	257
Eco32I	GATATC	1 cut(s)	313
Eco72I	CACGTG	1 cut(s)	200
EcoO109I	RGGNCCY	1 cut(s)	146
EcoRI	GAATTC	1 cut(s)	491
EcoRV	GATATC	1 cut(s)	313
EcoT38I	GRGCYC	1 cut(s)	257
Esp3I	CGTCTC	1 cut(s)	294
FaeI	CATG	3 cut(s)	178, 352, 635
FaiI	YATR	7 cut(s)	21, 176, 305, 350, 438, 564, 633
FaqI	GGGAC	3 cut(s)	188, 329, 635
FatI	CATG	3 cut(s)	174, 348, 631
FbaI	TGATCA	1 cut(s)	177
Fnu4HI	GCNGC	4 cut(s)	96, 99, 102, 273
FokI	GGATG	1 cut(s)	15
FriOI	GRGCYC	1 cut(s)	257
Fsp4HI	GCNGC	4 cut(s)	96, 99, 102, 273
FspBI	CTAG	1 cut(s)	185
GluI	GCNGC	4 cut(s)	96, 99, 102, 273
HaeIII	GGCC	3 cut(s)	5, 147, 167
Hin1II	CATG	3 cut(s)	178, 352, 635
HinfI	GANTC	2 cut(s)	284, 395
HphI	GGTGA	2 cut(s)	307, 515
Hpy188I	TCNGA	4 cut(s)	13, 33, 79, 252
Hpy188III	TCNNGA	4 cut(s)	107, 175, 358, 447
Hpy99I	CGWCG	1 cut(s)	359
HpyAV	CCTTC	3 cut(s)	62, 243, 368
HpyCH4IV	ACGT	2 cut(s)	199, 354
HpyCH4V	TGCA	9 cut(s)	58, 101, 133, 152, 163, 275, 426, 595, 664
HpyF10VI	GCNNNNNNNGC	2 cut(s)	55, 101
HpyF3I	CTNAG	2 cut(s)	291, 579
HpySE526I	ACGT	2 cut(s)	199, 354
Hsp92II	CATG	3 cut(s)	178, 352, 635
Ksp22I	TGATCA	1 cut(s)	177
Kzo9I	GATC	1 cut(s)	177
LmnI	GCTCC	3 cut(s)	54, 252, 628
LpnPI	CCDG	6 cut(s)	125, 149, 162, 278, 581, 650
Lsp1109I	GCAGC	4 cut(s)	82, 85, 113, 259
LweI	GCATC	1 cut(s)	161
MaeI	CTAG	1 cut(s)	185
MaeII	ACGT	2 cut(s)	199, 354
MalI	GATC	1 cut(s)	179
MboI	GATC	1 cut(s)	177
MboII	GAAGA	5 cut(s)	401, 419, 491, 526, 566
MfeI	CAATTG	1 cut(s)	431
MhlI	GDGCHC	1 cut(s)	257
MluCI	AATT	8 cut(s)	34, 381, 431, 450, 486, 491, 616, 672
MlyI	GAGTC	2 cut(s)	278, 389
MmeI	TCCRAC	1 cut(s)	311
MnlI	CCTC	3 cut(s)	39, 85, 475
MseI	TTAA	3 cut(s)	459, 497, 675
MspA1I	CMGCKG	1 cut(s)	95
MspCI	CTTAAG	2 cut(s)	458, 496
MunI	CAATTG	1 cut(s)	431
MwoI	GCNNNNNNNGC	2 cut(s)	55, 101
NdeII	GATC	1 cut(s)	177
NlaIII	CATG	3 cut(s)	178, 352, 635
NlaIV	GGNNCC	2 cut(s)	50, 254
PagI	TCATGA	1 cut(s)	174
PkrI	GCNGC	4 cut(s)	97, 100, 103, 274
PleI	GAGTC	2 cut(s)	278, 389
PmaCI	CACGTG	1 cut(s)	200
PmlI	CACGTG	1 cut(s)	200
PpsI	GAGTC	2 cut(s)	278, 389
Ppu21I	YACGTR	1 cut(s)	200
PspCI	CACGTG	1 cut(s)	200
PspN4I	GGNNCC	2 cut(s)	50, 254
PspPI	GGNCC	2 cut(s)	4, 146
PstI	CTGCAG	1 cut(s)	103
PstNI	CAGNNNCTG	1 cut(s)	98
PvuII	CAGCTG	1 cut(s)	95
RsaI	GTAC	1 cut(s)	353
RsaNI	GTAC	1 cut(s)	352
SaqAI	TTAA	3 cut(s)	459, 497, 675
SatI	GCNGC	4 cut(s)	96, 99, 102, 273
Sau3AI	GATC	1 cut(s)	177
Sau96I	GGNCC	2 cut(s)	4, 146
SchI	GAGTC	2 cut(s)	278, 389
SduI	GDGCHC	1 cut(s)	257
SfaNI	GCATC	1 cut(s)	161
SfcI	CTRYAG	1 cut(s)	99
SmlI	CTYRAG	2 cut(s)	458, 496
SmoI	CTYRAG	2 cut(s)	458, 496
Sse9I	AATT	8 cut(s)	34, 381, 431, 450, 486, 491, 616, 672
SspMI	CTAG	1 cut(s)	185
TaiI	ACGT	2 cut(s)	202, 357
TaqI	TCGA	2 cut(s)	268, 357
TasI	AATT	8 cut(s)	34, 381, 431, 450, 486, 491, 616, 672
Tru1I	TTAA	3 cut(s)	459, 497, 675
Tru9I	TTAA	3 cut(s)	459, 497, 675
TseI	GCWGC	4 cut(s)	95, 98, 101, 272
TspDTI	ATGAA	3 cut(s)	163, 420, 432
Vha464I	CTTAAG	2 cut(s)	458, 496
XapI	RAATTY	1 cut(s)	491
XspI	CTAG	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.