Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000721

Physical Location & Seq

Genomic Coordinates Reverse (-)

32128979 .. 32134615

Gene Structure 5637 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0303800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGTCGCCACCACCGACGCTAACGCCGTTGCTCCTCCTCCTCCTCCTATTCACACCACCCCTCCTCTCCCACTCGCCTTCTTCTTCTTCTTCTTCTTCTGCGATAACCTTCACCGACTCCCCCTCAATCTACGAATGGCAGTCCGCTCGCGCCACCTACTACGCCGCCTCCGACCCTCGCGACGCGGTTGGCGGCGCGTGCGGCTACGGCGACCTGACGAAGGCCGGTTTCGGAATGGCGACGGTGGGGCTGAGCGAGTCGCTGTTCGAGCGTGGCCAGATCTGCGGCGCGTGCTTCGAGGTCCGCTGCGTCGAGGACATGCGGTGGTGCATTCCCGGAACCTCCATCATTTTGACGGCCACGAACTTCTGCGCTCCCAACTATGGCTTCACCGCCGAGGGTGGGGGCCACTGTAACCCTCCGAATAAGCACTTGGTCCTCCCGATTGAGGCCTTTGAGAAGATCGCCATCTGGAAAGCTGGTAATATGCCCGTCCAGTATCGCAGGATAAAGTGTAGAAAGGAAGGAGGAGTTCGTTTTACTGTAGATGGGTCTAGTATCTTTATTTCAGTGCTGATCAGCAATGTTGCCGGCACTGGAGACATAACTGCAGTGAAGATCAAGGGTTCAAGAACTGGTTGGCTTCCAATGGGACGAAATTGGGGTCAAAACTGGCATATAAATGCTGATTTGAAGAATCAGCCTCTTTCTTTTGAGGTCACTAGCAGCGATGGGAAGACAGTTACATCTTACAACGTCGCTCCCAAGAATTGGAACTTCGGGCAGACTTTTGAAGGGAAGCAGTTTGAGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

271

Amino Acids

29.32

Weight (kDa)

8.09

Isoelectric Point (pI)

43.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPBB_1	PF03330	82 - 167	3.3e-17	Lytic transglycolase
Expansin_C	PF01357	178 - 255	5.6e-30	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000721)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06681
pyrus_communis	pycom15g04290
rosa_chinensis	RchiOBHm_Chr3g0480821 RchiOBHm_Chr4g0403981 RchiOBHm_Chr5g0039881 RchiOBHm_Chr6g0261121 RchiOBHm_Chr6g0269701 RchiOBHm_Chr6g0269821 RchiOBHm_Chr6g0269901 RchiOBHm_Chr6g0304541 RchiOBHm_Chr6g0310841 RchiOBHm_Chr7g0183611
rosa_laevigata	RLG00000010969
rosa_multiflora	Rmu_co8231291.1_g000001 Rmu_sc0000247.1_g000070 Rmu_sc0003610.1_g000022 Rmu_sc0003863.1_g000011 Rmu_sc0004838.1_g000014 Rmu_sc0009130.1_g000011 Rmu_sc0012229.1_g000015 Rmu_sc0026037.1_g000004
rosa_roxburghii	Rroxscaffold_1G00041250 Rroxscaffold_1G00041280 Rroxscaffold_3G00270360 Rroxscaffold_4G00309230 Rroxscaffold_6G00401000 Rroxscaffold_7G00163670 Rroxscaffold_7G00198420 Rroxscaffold_7G00198480
rosa_rugosa	Rorug01G0176000 Rorug03G0303800 Rorug06G0051400
rosa_samantha	Rh1AG055700 Rh1BG160600 Rh1DG191000 Rh2BG397100 Rh3AG238300 Rh3AG305000 Rh3BG271800 Rh3CG267600 Rh4AG121700 Rh4AG122300 Rh4CG130500 Rh4DG115100 Rh4DG115500 Rh5AG268700 Rh5AG269100 Rh5AG269300 Rh5AG269500 Rh5BG272900 Rh5BG273000 Rh5BG273200 Rh5DG281000 Rh6AG169400 Rh6AG169700 Rh6AG170800 Rh6AG445200 Rh6AG497100 Rh6BG175100 Rh6BG456700 Rh6BG506800 Rh6BG506900 Rh6BG507000 Rh6BG507100 Rh6CG169300 Rh6CG458000 Rh6CG512600 Rh6CG512800 Rh6CG513000 Rh6CG513100 Rh6DG161900 Rh6DG444900 Rh6DG499800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	771
AccBSI	CCGCTC	1 cut(s)	146
AccII	CGCG	5 cut(s)	150, 180, 185, 197, 290
AciI	CCGC	9 cut(s)	144, 165, 185, 192, 201, 285, 304, 322, 393
AcoI	YGGCCR	2 cut(s)	274, 357
AfiI	CCNNNNNNNGG	5 cut(s)	220, 383, 402, 448, 771
AgsI	TTSAA	3 cut(s)	630, 694, 794
AjuI	GAANNNNNNNTTGG	4 cut(s)	371, 403, 416, 448
AluBI	AGCT	1 cut(s)	479
AluI	AGCT	1 cut(s)	479
Alw26I	GTCTC	1 cut(s)	594
AoxI	GGCC	5 cut(s)	222, 274, 357, 406, 450
ApeKI	GCWGC	2 cut(s)	306, 726
ArsI	GACNNNNNNTTYG	2 cut(s)	649, 681
AspLEI	GCGC	4 cut(s)	152, 197, 290, 374
AspS9I	GGNCC	3 cut(s)	301, 406, 436
AsuC2I	CCSGG	1 cut(s)	336
AsuHPI	GGTGA	2 cut(s)	103, 382
AvaII	GGWCC	2 cut(s)	301, 436
BalI	TGGCCA	1 cut(s)	276
BbsI	GAAGAC	1 cut(s)	743
BbvI	GCAGC	2 cut(s)	293, 738
BccI	CCATC	4 cut(s)	353, 476, 542, 725
BceAI	ACGGC	3 cut(s)	10, 223, 372
BcgI	CGANNNNNNTGC	2 cut(s)	128, 162
BclI	TGATCA	1 cut(s)	576
BcnI	CCSGG	1 cut(s)	336
BcoDI	GTCTC	1 cut(s)	594
BfaI	CTAG	2 cut(s)	555, 723
BfmI	CTRYAG	2 cut(s)	543, 609
BglII	AGATCT	1 cut(s)	279
BisI	GCNGC	6 cut(s)	165, 193, 202, 286, 307, 727
BlpI	GCTNAGC	1 cut(s)	251
BlsI	GCNGC	6 cut(s)	166, 194, 203, 287, 308, 728
Bme1390I	CCNGG	1 cut(s)	336
Bme18I	GGWCC	2 cut(s)	301, 436
BmgT120I	GGNCC	3 cut(s)	301, 406, 436
BmiI	GGNNCC	2 cut(s)	340, 407
BmrFI	CCNGG	1 cut(s)	336
BpiI	GAAGAC	1 cut(s)	743
BpmI	CTGGAG	1 cut(s)	618
Bpu1102I	GCTNAGC	1 cut(s)	251
BpuMI	CCSGG	1 cut(s)	336
BsaBI	GATNNNNATC	1 cut(s)	467
BsaJI	CCNNGG	1 cut(s)	396
BsaXI	ACNNNNNCTCC	4 cut(s)	45, 75, 152, 182
Bsc4I	CCNNNNNNNGG	5 cut(s)	220, 383, 402, 448, 771
Bse118I	RCCGGY	2 cut(s)	224, 590
Bse1I	ACTGG	4 cut(s)	496, 601, 640, 677
Bse3DI	GCAATG	1 cut(s)	589
Bse8I	GATNNNNATC	1 cut(s)	467
BseDI	CCNNGG	1 cut(s)	396
BseJI	GATNNNNATC	1 cut(s)	467
BseLI	CCNNNNNNNGG	5 cut(s)	220, 383, 402, 448, 771
BseMI	GCAATG	1 cut(s)	589
BseMII	CTCAG	1 cut(s)	242
BseNI	ACTGG	4 cut(s)	496, 601, 640, 677
BseRI	GAGGAG	6 cut(s)	23, 26, 29, 32, 53, 543
BseXI	GCAGC	2 cut(s)	293, 738
Bsh1236I	CGCG	5 cut(s)	150, 180, 185, 197, 290
BshFI	GGCC	5 cut(s)	224, 276, 359, 408, 452
BsiSI	CCGG	3 cut(s)	225, 336, 591
BslFI	GGGAC	1 cut(s)	666
BslI	CCNNNNNNNGG	5 cut(s)	220, 383, 402, 448, 771
BsmAI	GTCTC	1 cut(s)	594
BsmFI	GGGAC	1 cut(s)	666
BsmI	GAATGC	1 cut(s)	330
BsnI	GGCC	5 cut(s)	224, 276, 359, 408, 452
Bsp143I	GATC	4 cut(s)	279, 462, 576, 618
Bsp1720I	GCTNAGC	1 cut(s)	251
Bsp68I	TCGCGA	1 cut(s)	180
BspACI	CCGC	9 cut(s)	144, 165, 185, 192, 201, 285, 304, 322, 393
BspANI	GGCC	5 cut(s)	224, 276, 359, 408, 452
BspCNI	CTCAG	1 cut(s)	243
BspFNI	CGCG	5 cut(s)	150, 180, 185, 197, 290
BspLI	GGNNCC	2 cut(s)	340, 407
BspMAI	CTGCAG	1 cut(s)	613
BsrBI	CCGCTC	1 cut(s)	146
BsrDI	GCAATG	1 cut(s)	589
BsrFI	RCCGGY	2 cut(s)	224, 590
BsrI	ACTGG	4 cut(s)	496, 601, 640, 677
BssAI	RCCGGY	2 cut(s)	224, 590
BssECI	CCNNGG	1 cut(s)	396
BssMI	GATC	4 cut(s)	279, 462, 576, 618
Bst4CI	ACNGT	4 cut(s)	244, 413, 544, 742
BstC8I	GCNNGC	4 cut(s)	148, 199, 292, 592
BstDEI	CTNAG	1 cut(s)	251
BstENI	CCTNNNNNAGG	1 cut(s)	218
BstFNI	CGCG	5 cut(s)	150, 180, 185, 197, 290
BstHHI	GCGC	4 cut(s)	152, 197, 290, 374
BstKTI	GATC	4 cut(s)	282, 465, 579, 621
BstMAI	GTCTC	1 cut(s)	594
BstMBI	GATC	4 cut(s)	279, 462, 576, 618
BstMWI	GCNNNNNNNGC	6 cut(s)	198, 201, 207, 268, 282, 291
BstNSI	RCATGY	1 cut(s)	322
BstSCI	CCNGG	1 cut(s)	334
BstSFI	CTRYAG	2 cut(s)	543, 609
BstUI	CGCG	5 cut(s)	150, 180, 185, 197, 290
BstV1I	GCAGC	2 cut(s)	293, 738
BstV2I	GAAGAC	1 cut(s)	743
BstX2I	RGATCY	1 cut(s)	279
BstYI	RGATCY	1 cut(s)	279
BsuRI	GGCC	5 cut(s)	224, 276, 359, 408, 452
BtgZI	GCGATG	1 cut(s)	744
BtsI	GCAGTG	1 cut(s)	618
BtsIMutI	CAGTG	4 cut(s)	409, 576, 594, 618
BtuMI	TCGCGA	1 cut(s)	180
Cac8I	GCNNGC	4 cut(s)	148, 199, 292, 592
CfoI	GCGC	4 cut(s)	152, 197, 290, 374
Cfr10I	RCCGGY	2 cut(s)	224, 590
Cfr13I	GGNCC	3 cut(s)	301, 406, 436
CseI	GACGC	3 cut(s)	25, 191, 298
CviAII	CATG	1 cut(s)	319
DdeI	CTNAG	1 cut(s)	251
DpnI	GATC	4 cut(s)	281, 464, 578, 620
DpnII	GATC	4 cut(s)	279, 462, 576, 618
EaeI	YGGCCR	2 cut(s)	274, 357
Eco147I	AGGCCT	1 cut(s)	452
Eco47I	GGWCC	2 cut(s)	301, 436
EcoNI	CCTNNNNNAGG	1 cut(s)	218
FaeI	CATG	1 cut(s)	322
FaiI	YATR	6 cut(s)	320, 384, 488, 605, 678, 680
FaqI	GGGAC	1 cut(s)	666
FatI	CATG	1 cut(s)	318
FbaI	TGATCA	1 cut(s)	576
Fnu4HI	GCNGC	6 cut(s)	165, 193, 202, 286, 307, 727
Fsp4HI	GCNGC	6 cut(s)	165, 193, 202, 286, 307, 727
FspBI	CTAG	2 cut(s)	555, 723
GlaI	GCGC	4 cut(s)	151, 196, 289, 373
GluI	GCNGC	6 cut(s)	165, 193, 202, 286, 307, 727
GsuI	CTGGAG	1 cut(s)	618
HaeIII	GGCC	5 cut(s)	224, 276, 359, 408, 452
HapII	CCGG	3 cut(s)	225, 336, 591
HgaI	GACGC	3 cut(s)	25, 191, 298
HhaI	GCGC	4 cut(s)	152, 197, 290, 374
Hin1II	CATG	1 cut(s)	322
Hin6I	GCGC	4 cut(s)	150, 195, 288, 372
HinP1I	GCGC	4 cut(s)	150, 195, 288, 372
HinfI	GANTC	4 cut(s)	116, 257, 697, 809
HpaII	CCGG	3 cut(s)	225, 336, 591
HphI	GGTGA	2 cut(s)	103, 382
Hpy188I	TCNGA	3 cut(s)	172, 233, 423
Hpy188III	TCNNGA	5 cut(s)	179, 442, 472, 630, 813
Hpy99I	CGWCG	5 cut(s)	19, 185, 244, 314, 761
HpyAV	CCTTC	5 cut(s)	87, 118, 214, 518, 788
HpyCH4III	ACNGT	4 cut(s)	244, 413, 544, 742
HpyCH4IV	ACGT	1 cut(s)	756
HpyCH4V	TGCA	2 cut(s)	330, 611
HpyF10VI	GCNNNNNNNGC	6 cut(s)	198, 201, 207, 268, 282, 291
HpyF3I	CTNAG	1 cut(s)	251
HpySE526I	ACGT	1 cut(s)	756
Hsp92II	CATG	1 cut(s)	322
HspAI	GCGC	4 cut(s)	150, 195, 288, 372
KroI	GCCGGC	1 cut(s)	590
KroNI	GCCGGC	1 cut(s)	592
Ksp22I	TGATCA	1 cut(s)	576
Kzo9I	GATC	4 cut(s)	279, 462, 576, 618
LmnI	GCTCC	3 cut(s)	36, 379, 766
Lsp1109I	GCAGC	2 cut(s)	293, 738
MaeI	CTAG	2 cut(s)	555, 723
MaeII	ACGT	1 cut(s)	756
MaeIII	GTNAC	3 cut(s)	413, 718, 742
MalI	GATC	4 cut(s)	281, 464, 578, 620
MbiI	CCGCTC	1 cut(s)	146
MboI	GATC	4 cut(s)	279, 462, 576, 618
MflI	RGATCY	1 cut(s)	279
MlsI	TGGCCA	1 cut(s)	276
MluCI	AATT	2 cut(s)	658, 769
MluNI	TGGCCA	1 cut(s)	276
MlyI	GAGTC	2 cut(s)	110, 266
MmeI	TCCRAC	1 cut(s)	195
Mox20I	TGGCCA	1 cut(s)	276
MroNI	GCCGGC	1 cut(s)	590
MscI	TGGCCA	1 cut(s)	276
MslI	CAYNNNNRTG	1 cut(s)	681
Msp20I	TGGCCA	1 cut(s)	276
MspA1I	CMGCKG	1 cut(s)	306
MspI	CCGG	3 cut(s)	225, 336, 591
MspR9I	CCNGG	1 cut(s)	336
Mva1269I	GAATGC	1 cut(s)	330
MvnI	CGCG	5 cut(s)	150, 180, 185, 197, 290
MwoI	GCNNNNNNNGC	6 cut(s)	198, 201, 207, 268, 282, 291
NaeI	GCCGGC	1 cut(s)	592
NciI	CCSGG	1 cut(s)	336
NdeII	GATC	4 cut(s)	279, 462, 576, 618
NgoMIV	GCCGGC	1 cut(s)	590
NlaIII	CATG	1 cut(s)	322
NlaIV	GGNNCC	2 cut(s)	340, 407
NmeAIII	GCCGAG	1 cut(s)	421
NmuCI	GTSAC	1 cut(s)	718
NruI	TCGCGA	1 cut(s)	180
NspI	RCATGY	1 cut(s)	322
PceI	AGGCCT	1 cut(s)	452
PcsI	WCGNNNNNNNCGW	3 cut(s)	11, 23, 168
PctI	GAATGC	1 cut(s)	330
PdiI	GCCGGC	1 cut(s)	592
PfeI	GAWTC	1 cut(s)	697
PflMI	CCANNNNNTGG	1 cut(s)	771
PfoI	TCCNGGA	1 cut(s)	334
PkrI	GCNGC	6 cut(s)	166, 194, 203, 287, 308, 728
PleI	GAGTC	2 cut(s)	110, 265
PpsI	GAGTC	2 cut(s)	110, 265
PspN4I	GGNNCC	2 cut(s)	340, 407
PspPI	GGNCC	3 cut(s)	301, 406, 436
PstI	CTGCAG	1 cut(s)	613
PsuI	RGATCY	1 cut(s)	279
RruI	TCGCGA	1 cut(s)	180
RseI	CAYNNNNRTG	1 cut(s)	681
SatI	GCNGC	6 cut(s)	165, 193, 202, 286, 307, 727
Sau3AI	GATC	4 cut(s)	279, 462, 576, 618
Sau96I	GGNCC	3 cut(s)	301, 406, 436
SchI	GAGTC	2 cut(s)	110, 266
ScrFI	CCNGG	1 cut(s)	336
SetI	ASST	8 cut(s)	110, 158, 216, 303, 344, 481, 720, 759
SfcI	CTRYAG	2 cut(s)	543, 609
SinI	GGWCC	2 cut(s)	301, 436
SmiMI	CAYNNNNRTG	1 cut(s)	681
Sse9I	AATT	2 cut(s)	658, 769
SseBI	AGGCCT	1 cut(s)	452
SsiI	CCGC	9 cut(s)	144, 165, 185, 192, 201, 285, 304, 322, 393
SspMI	CTAG	2 cut(s)	555, 723
StuI	AGGCCT	1 cut(s)	452
StyD4I	CCNGG	1 cut(s)	334
TaaI	ACNGT	4 cut(s)	244, 413, 544, 742
TaiI	ACGT	1 cut(s)	759
TaqI	TCGA	3 cut(s)	267, 297, 312
TasI	AATT	2 cut(s)	658, 769
TauI	GCSGC	4 cut(s)	167, 195, 204, 288
TfiI	GAWTC	1 cut(s)	697
TscAI	CASTG	4 cut(s)	416, 576, 601, 618
TseFI	GTSAC	1 cut(s)	718
TseI	GCWGC	2 cut(s)	306, 726
Tsp45I	GTSAC	1 cut(s)	718
TspRI	CASTG	4 cut(s)	416, 576, 601, 618
Van91I	CCANNNNNTGG	1 cut(s)	771
VpaK11BI	GGWCC	2 cut(s)	301, 436
XagI	CCTNNNNNAGG	1 cut(s)	218
XceI	RCATGY	1 cut(s)	322
XspI	CTAG	2 cut(s)	555, 723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.